Cory M. Johannessen
Active 2000–2024
- 37
- Papers
- 20,826
- Citations
- 30
- h-index
- 37
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology57.2%
- Medicine32.1%
- Immunology and Microbiology5.6%
- Computer Science2%
- Neuroscience1.2%
- Chemistry0.4%
- Other1.5%
Topics
- Single-cell and spatial transcriptomics5.6%
- Cancer Genomics and Diagnostics5.3%
- Melanoma and MAPK Pathways4.2%
- Cancer Immunotherapy and Biomarkers2.8%
- Cancer Cells and Metastasis2.2%
- Epigenetics and DNA Methylation2%
- Other77.9%
Coauthors
- Federica Piccioni13
- David E. Root11
- Levi A. Garraway10
- Lisa Brenan8
- Amy Goodale6
- Gad Getz6
- Matthew Meyerson6
- Ofir Cohen6
- William C. Hahn6
- Eliezer M. Van Allen5
- Keith T. Flaherty5
- Sasha Pantel5
- Xiaoping Yang5
- Matthew G. Rees4
- Nicole S. Persky4
- Anthony Letai3
- Brenton R. Paolella3
- Daniel J. Treacy3
- David J. Konieczkowski3
- Dennie T. Frederick3
- Elizabeth E. Reczek3
- Eva M. Goetz3
- Francisca Vázquez3
- Gregory V. Kryukov3
All papers
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
Authors: Itay Tirosh, Benjamin Izar, Sanjay M. Prakadan, Marc H. Wadsworth, Daniel J. Treacy, John J. Trombetta, Asaf Rotem, Christopher Rodman, Christine G. Lian, Gëorge F. Murphy, Mohammad Fallahi‐Sichani, Ken Dutton‐Regester, Jia‐Ren Lin, Ofir Cohen, Parin Shah, Diana Lu, Alex S. Genshaft, Travis K. Hughes, Carly G.K. Ziegler, Samuel W. Kazer, Aleth Gaillard, Kellie E. Kolb, Alexandra–Chloé Villani, Cory M. Johannessen, Aleksandr Andreev, Eliezer M. Van Allen, Monica M. Bertagnolli, Peter K. Sorger, Ryan J. Sullivan, Keith T. Flaherty, Dennie T. Frederick, Judit Jané‐Valbuena, Charles H. Yoon, Orit Rozenblatt–Rosen, Alex K. Shalek, Aviv Regev, Levi A. Garraway - Science 2016 cited by 5,391
- Next-generation characterization of the Cancer Cell Line Encyclopedia
Authors: Mahmoud Ghandi, Franklin W. Huang, Judit Jané‐Valbuena, Gregory V. Kryukov, Christopher Lo, E. Robert McDonald, Jordi Barretina, Ellen Gelfand, Craig M. Bielski, Haoxin Li, Kevin Hu, Alexander Andreev-Drakhlin, Jaegil Kim, Julian M. Hess, Brian J. Haas, François Aguet, Barbara A. Weir, Michael Rothberg, Brenton R. Paolella, Michael S. Lawrence, Rehan Akbani, Yiling Lu, Hong L. Tiv, Prafulla C. Gokhale, Antoine de Weck, Ali Amin Mansour, Coyin Oh, Juliann Shih, Kevin Hadi, Yanay Rosen, Jonathan Bistline, K. Venkatesan, Anupama Reddy, Dmitriy Sonkin, Manway Liu, Joseph Lehár, Joshua M. Korn, Dale Porter, Michael D. Jones, Javad Golji, Giordano Caponigro, Jordan E. Taylor, Caitlin M. Dunning, Amanda L. Creech, Allison Warren, James M. McFarland, Mahdi Zamanighomi, Audrey Kauffmann, Nicolas Stransky, Marcin Imieliński, Yosef E. Maruvka, Andrew D. Cherniack, Aviad Tsherniak, Francisca Vázquez, Jacob D. Jaffe, Andrew A. Lane, David M. Weinstock, Cory M. Johannessen, Michael Morrissey, Frank Stegmeier, Robert Schlegel, William C. Hahn, Gad Getz, Gordon B. Mills, Jesse S. Boehm, Todd R. Golub, Levi A. Garraway, William R. Sellers - Nature 2019 cited by 3,761
- Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors
Authors: Viktor A. Adalsteinsson, Gavin Ha, Samuel S. Freeman, Atish D. Choudhury, Daniel G. Stover, Heather A. Parsons, Gregory Gydush, Sarah C. Reed, Denisse Rotem, Justin Rhoades, D. V. Loginov, Dimitri Livitz, Daniel Rosebrock, Ignaty Leshchiner, Jaegil Kim, Chip Stewart, Mara Rosenberg, Joshua M. Francis, Cheng‐Zhong Zhang, Ofir Cohen, Coyin Oh, Huiming Ding, Paz Polak, Maxwell R. Lloyd, Sairah Mahmud, Karla Helvie, Margaret S. Merrill, Rebecca A. Santiago, Edward O’Connor, Seong Ho Jeong, Rachel Leeson, Rachel Barry, Joseph F. Kramkowski, Zhenwei Zhang, L Polácek, Jens G. Lohr, Molly Schleicher, Emily Lipscomb, Andrea Saltzman, Nelly Oliver, Lori Marini, Adrienne G. Waks, Lauren C. Harshman, Sara M. Tolaney, Eliezer M. Van Allen, Eric P. Winer, Nancy U. Lin, Mari Nakabayashi, Mary‐Ellen Taplin, Cory M. Johannessen, Levi A. Garraway, Todd R. Golub, Jesse S. Boehm, Nikhil Wagle, Gad Getz, J. Christopher Love, Matthew Meyerson - Nature Communications 2017 cited by 1,095
- Mutational processes shape the landscape of TP53 mutations in human cancer
Authors: Andrew O. Giacomelli, Xiaoping Yang, Robert Lintner, James M. McFarland, Marc Duby, Jaegil Kim, Thomas P. Howard, David Y. Takeda, Seav Huong Ly, Eejung Kim, Hugh Gannon, Brian Hurhula, Ted Sharpe, Amy Goodale, Briana Fritchman, Scott Steelman, Francisca Vázquez, Aviad Tsherniak, Andrew J. Aguirre, John G. Doench, Federica Piccioni, Charles W.M. Roberts, Matthew Meyerson, Gad Getz, Cory M. Johannessen, David E. Root, William C. Hahn - Nature Genetics 2018 cited by 598
- Mitochondrial Reprogramming Underlies Resistance to BCL-2 Inhibition in Lymphoid Malignancies
Authors: Romain Guièze, Vivian M. Liu, Daniel Rosebrock, Alexis A. Jourdain, María Hernández‐Sánchez, Aina Zurita Martinez, Jing Sun, Elisa ten Hacken, Kaitlyn Baranowski, Philip A. Thompson, Jin-Mi Heo, Zachary Cartun, Ozan Aygün, J. Bryan Iorgulescu, Wandi Zhang, Giulia Notarangelo, Dimitri Livitz, Shuqiang Li, Matthew S. Davids, Anat Biran, Stacey M. Fernandes, Jennifer R. Brown, Ana Lako, Zoe Ciantra, Matthew A. Lawlor, Derin B. Keskin, Namrata D. Udeshi, William G. Wierda, Kenneth J. Livak, Anthony Letai, Donna Neuberg, J. Wade Harper, Steven A. Carr, Federica Piccioni, Christopher J. Ott, Ignaty Leshchiner, Cory M. Johannessen, John G. Doench, Vamsi K. Mootha, Gad Getz, Catherine J. Wu - Cancer Cell 2019 cited by 360
- The Genetic Landscape of Clinical Resistance to RAF Inhibition in Metastatic Melanoma
Authors: Eliezer M. Van Allen, Nikhil Wagle, Antje Sucker, Daniel J. Treacy, Cory M. Johannessen, Eva M. Goetz, Chelsea S. Place, Amaro Taylor‐Weiner, Steven R. Whittaker, Gregory V. Kryukov, Eran Hodis, Mara Rosenberg, Aaron McKenna, Kristian Cibulskis, Deborah Farlow, Lisa Zimmer, Uwe Hillen, Ralf Gutzmer, Simone M. Goldinger, Selma Ugurel, Helen Gogas, Friederike Egberts, Carola Berking, Uwe Trefzer, Carmen Loquai, Benjamin Weide, Jessica C. Hassel, Stacey Gabriel, Scott L. Carter, Gad Getz, Levi A. Garraway, Dirk Schadendorf - Cancer Discovery 2013 cited by 940
- A public genome-scale lentiviral expression library of human ORFs
Authors: Xiaoping Yang, Jesse S. Boehm, Xinping Yang, Kourosh Salehi‐Ashtiani, Tong Hao, Yun Shen, Rakela Lubonja, Sapana Thomas, Ozan Alkan, Tashfeen Bhimdi, Thomas M Green, Cory M. Johannessen, Serena J. Silver, Cindy M. Nguyen, Ryan R. Murray, Haley Hieronymus, Dawit Balcha, Changyu Fan, Chenwei Lin, Lila Ghamsari, Marc Vidal, William C. Hahn, David E. Hill, David E. Root - Nature Methods 2011 cited by 588
- Paralog knockout profiling identifies DUSP4 and DUSP6 as a digenic dependence in MAPK pathway-driven cancers
Authors: Takahiro Ito, Michael J. Young, Ruitong Li, Sidharth Jain, Andreas Wernitznig, John M. Krill-Burger, Christopher T. Lemke, Davide Monducci, Diego J. Rodriguez, Liang Chang, Sanjukta Dutta, Debjani Pal, Brenton R. Paolella, Michael Rothberg, David E. Root, Cory M. Johannessen, Laxmi Parida, Gad Getz, Francisca Vázquez, John G. Doench, Mahdi Zamanighomi, William R. Sellers - Nature Genetics 2021 cited by 171
- COT drives resistance to RAF inhibition through MAP kinase pathway reactivation
Authors: Cory M. Johannessen, Jesse S. Boehm, So Young Kim, Sapana Thomas, Leslie Wardwell, Laura A. Johnson, Caroline M. Emery, Nicolas Stransky, Alexandria P. Cogdill, Jordi Barretina, Giordano Caponigro, Haley Hieronymus, Ryan R. Murray, Kourosh Salehi‐Ashtiani, David E. Hill, Marc Vidal, Jean J. Zhao, Xiaoping Yang, Ozan Alkan, Sung Joon Kim, Jennifer L. Harris, Christopher J. Wilson, Vic E. Myer, Peter M. Finan, David E. Root, Thomas M. Roberts, Todd R. Golub, Keith T. Flaherty, Reinhard Dummer, Barbara L. Weber, William R. Sellers, Robert Schlegel, Jennifer A. Wargo, William C. Hahn, Levi A. Garraway - Nature 2010 cited by 1,465
- A Convergence-Based Framework for Cancer Drug Resistance
Authors: David J. Konieczkowski, Cory M. Johannessen, Levi A. Garraway - Cancer Cell 2018 cited by 259
- A Melanoma Cell State Distinction Influences Sensitivity to MAPK Pathway Inhibitors
Authors: David J. Konieczkowski, Cory M. Johannessen, Omar O. Abudayyeh, Jong Wook Kim, Zachary A. Cooper, Adriano Piris, Dennie T. Frederick, Michal Barzily-Rokni, Ravid Straussman, Rizwan Haq, David E. Fisher, Jill P. Mesirov, William C. Hahn, Keith T. Flaherty, Jennifer A. Wargo, Pablo Tamayo, Levi A. Garraway - Cancer Discovery 2014 cited by 536
- MAP Kinase Pathway Alterations in BRAF -Mutant Melanoma Patients with Acquired Resistance to Combined RAF/MEK Inhibition
Authors: Nikhil Wagle, Eliezer M. Van Allen, Daniel J. Treacy, Dennie T. Frederick, Zachary A. Cooper, Amaro Taylor‐Weiner, Mara Rosenberg, Eva M. Goetz, Ryan J. Sullivan, Deborah Farlow, Dennis C. Friedrich, Kristin Anderka, Danielle Perrin, Cory M. Johannessen, Aaron McKenna, Kristian Cibulskis, Gregory V. Kryukov, Eran Hodis, Donald P. Lawrence, Sheila Fisher, Gad Getz, Stacey Gabriel, Scott L. Carter, Keith T. Flaherty, Jennifer A. Wargo, Levi A. Garraway - Cancer Discovery 2013 cited by 473
- Dissecting Therapeutic Resistance to RAF Inhibition in Melanoma by Tumor Genomic Profiling
Authors: Nikhil Wagle, Caroline Emery, Michael F. Berger, Matthew J. Davis, Allison M. Sawyer, Panisa Pochanard, Sarah M. Kehoe, Cory M. Johannessen, Laura E. MacConaill, William C. Hahn, Matthew Meyerson, Levi A. Garraway - Journal of Clinical Oncology 2011 cited by 996
- The NF1 tumor suppressor critically regulates TSC2 and mTOR
Authors: Cory M. Johannessen, Elizabeth E. Reczek, Marianne F. James, Hilde Brems, Eric Legius, Karen Cichowski - National Academy of Sciences, Proceedings of the National Academy of Sciences 2005 cited by 597
- A melanocyte lineage program confers resistance to MAP kinase pathway inhibition
Authors: Cory M. Johannessen, Laura A. Johnson, Federica Piccioni, Aisha Townes, Dennie T. Frederick, Melanie Donahue, Rajiv Narayan, Keith T. Flaherty, Jennifer A. Wargo, David E. Root, Levi A. Garraway - Nature 2013 cited by 455
- Phenotypic Characterization of a Comprehensive Set of MAPK1/ERK2 Missense Mutants
Authors: Lisa Brenan, Aleksandr Andreev, Ofir Cohen, Sasha Pantel, Atanas Kamburov, Davide Cacchiarelli, Nicole S. Persky, Cong Zhu, Mukta Bagul, Eva M. Goetz, Alex B. Burgin, Levi A. Garraway, Gad Getz, Tarjei S. Mikkelsen, Federica Piccioni, David E. Root, Cory M. Johannessen - Cell Reports 2016 cited by 172
- A negative feedback signaling network underlies oncogene-induced senescence
Authors: Stéphanie Courtois-Cox, Sybil M. Genther Williams, Elizabeth E. Reczek, Bryan W. Johnson, Lauren T. McGillicuddy, Cory M. Johannessen, Pablo E. Hollstein, Mia MacCollin, Karen Cichowski - Cancer Cell 2006 cited by 484
- Defining the landscape of ATP-competitive inhibitor resistance residues in protein kinases
Authors: Nicole S. Persky, Desiree Hernandez, M. Do Carmo, Lisa Brenan, Ofir Cohen, Shunsuke Kitajima, Utthara Nayar, Amy K. Walker, Sasha Pantel, Yilin Lee, Jonathon Cordova, Murugappan Sathappa, Cong Zhu, Tikvah K. Hayes, Prahlad T. Ram, Priya Pancholi, Tarej Mikkelsen, David A. Barbie, Xiaoping Yang, Rizwan Haq, Federica Piccioni, David E. Root, Cory M. Johannessen - Nature Structural & Molecular Biology 2020 cited by 63
- Regulation of mTOR and Cell Growth in Response to Energy Stress by REDD1
Authors: Avi Sofer, Kui Lei, Cory M. Johannessen, Leif W. Ellisen - Molecular and Cellular Biology 2005 cited by 450
- Pooled Genomic Screens Identify Anti-apoptotic Genes as Targetable Mediators of Chemotherapy Resistance in Ovarian Cancer
Authors: Elizabeth H. Stover, Maria B. Baco, Ofir Cohen, Yvonne Y. Li, Elizabeth L. Christie, Mukta Bagul, Amy Goodale, Yenarae Lee, Sasha Pantel, Matthew G. Rees, Guo Wei, Adam Presser, Maya K. Gelbard, Weiqun Zhang, Ioannis K. Zervantonakis, Patrick Bhola, Jeremy Ryan, Jennifer L. Guerriero, Joan Montero, Felice J. Liang, Andrew D. Cherniack, Federica Piccioni, Ursula A. Matulonis, David D.L. Bowtell, Kristopher A. Sarosiek, Anthony Letai, Levi A. Garraway, Cory M. Johannessen, Matthew Meyerson - Molecular Cancer Research 2019 cited by 50
- Mechanisms of action of valproate: a commentatory
Authors: Cory M. Johannessen - Neurochemistry International 2000 cited by 397
- DNA methyltransferase inhibition overcomes diphthamide pathway deficiencies underlying CD123-targeted treatment resistance
Authors: Katsuhiro Togami, Timothy J. Pastika, Jason Stephansky, Mahmoud Ghandi, Amanda L. Christie, Kristen L. Jones, C. Anderson Johnson, Ross Lindsay, Christopher Brooks, Anthony Letai, Jeffrey W. Craig, Olga Pozdnyakova, David M. Weinstock, Joan Montero, Jon C. Aster, Cory M. Johannessen, Andrew A. Lane - Journal of Clinical Investigation 2019 cited by 86
- Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants
Authors: Tikvah K. Hayes, Elisa Aquilanti, Nicole S. Persky, Xiaoping Yang, Erica Kim, Lisa Brenan, Amy Goodale, Douglas Alan, Ted Sharpe, Robert Shue, Lindsay Westlake, Lior Golomb, Brianna Silverman, Myshal D. Morris, Ty Running Fisher, Eden Beyene, Yvonne Li, Andrew D. Cherniack, Federica Piccioni, J. Kevin Hicks, Andrew Chi, Daniel P. Cahill, Jörg Dietrich, Tracy T. Batchelor, David E. Root, Cory M. Johannessen, Matthew Meyerson - Nature Communications 2024 cited by 30
- REDD1, a Developmentally Regulated Transcriptional Target of p63 and p53, Links p63 to Regulation of Reactive Oxygen Species
Authors: Leif W. Ellisen, Kate D Ramsayer, Cory M. Johannessen, Annie Yang, Hideyuki Beppu, Karolina Minda, Jonathan D. Oliner, Frank McKeon, Daniel A. Haber - Molecular Cell 2002 cited by 480
