Michael K. Gilson
Active 1985–2026
- 156
- Papers
- 27,318
- Citations
- 82
- h-index
- 139
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology36.5%
- Computer Science34%
- Medicine10%
- Chemistry5%
- Physics and Astronomy3.8%
- Materials Science3.5%
- Other7.2%
Topics
- Computational Drug Discovery Methods16.5%
- Protein Structure and Dynamics12.9%
- Enzyme Structure and Function3.3%
- Bioinformatics and Genomic Networks3.2%
- Machine Learning in Materials Science3%
- Spectroscopy and Quantum Chemical Studies2.3%
- Other58.8%
Coauthors
- David L. Mobley18
- J. Andrew McCammon13
- John D. Chodera11
- Michael R. Shirts11
- Niel M. Henriksen11
- Andrew T. Fenley9
- Hari S. Muddana9
- Jan Antosiewicz8
- Michael Chiu8
- Rommie E. Amaro8
- Barry Honig7
- Germano Heinzelmann7
- Jian Yin7
- Lee‐Ping Wang7
- Peter Eckmann7
- Rose Yu7
- Wei Chen7
- Christopher I. Bayly6
- David R. Slochower6
- Tom Kurtzman6
- W. Patrick Walters6
- Caitlin C. Bannan5
- Chia‐en A. Chang5
- Jeffrey Wagner5
All papers
- BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology
Authors: Michael K. Gilson, Tiqing Liu, Michael Baitaluk, George Nicola, Linda Hwang, Jenny Chong - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 1,674
- BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities
Authors: Tiqing Liu, Yuhmei Lin, Xin Wen, Robert N. Jorissen, Michael K. Gilson - Nucleic Acids Research, Nucleic Acids Res. 2006 cited by 2,147
- Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset
Authors: Michael R. Shirts, Christoph Klein, Jason M. Swails, Jian Yin, Michael K. Gilson, David L. Mobley, David A. Case, Ellen D. Zhong - Journal of Computer-Aided Molecular Design, J. Comput. Aided Mol. Des. 2016 cited by 394
- Predicting Binding Free Energies: Frontiers and Benchmarks
Authors: David L. Mobley, Michael K. Gilson - Annual Review of Biophysics 2017 cited by 411
- The statistical-thermodynamic basis for computation of binding affinities: a critical review
Authors: Michael K. Gilson, James A. Given, Bruce L. Bush, J. Andrew McCammon - Biophysical Journal 1997 cited by 1,262
- Calculation of Protein-Ligand Binding Affinities
Authors: Michael K. Gilson, Huan‐Xiang Zhou - Annual Review of Biophysics and Biomolecular Structure 2007 cited by 966
- CACHE (Critical Assessment of Computational Hit-finding Experiments): A public–private partnership benchmarking initiative to enable the development of computational methods for hit-finding
Authors: Suzanne Ackloo, Rima Al‐awar, Rommie E. Amaro, C.H. Arrowsmith, Hatylas Azevedo, Robert A. Batey, Yoshua Bengio, Ulrich A. K. Betz, Cristian Bologa, John D. Chodera, Wendy D. Cornell, Ian Dunham, Gerhard F. Ecker, Kristina Edfeldt, A.M. Edwards, Michael K. Gilson, Cláudia R. Gordijo, Gerhard Heßler, Alexander Hillisch, Anders Hogner, John J. Irwin, Johanna M. Jansen, Daniel Kühn, Andrew R. Leach, Alpha A. Lee, Uta Lessel, Maxwell R. Morgan, John Moult, Ingo Muegge, Tudor I. Oprea, Benjamin Perry, Patrick Riley, Sophie A. L. Rousseaux, Kumar Singh Saikatendu, Vijayaratnam Santhakumar, Matthieu Schapira, Cora Scholten, Matthew H. Todd, Masoud Vedadi, Andrea Volkamer, Timothy M. Willson - Nature Reviews Chemistry 2022 cited by 102
- Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2)
Authors: Michael Schauperl, Paul S. Nerenberg, Hyesu Jang, Lee‐Ping Wang, Christopher I. Bayly, David L. Mobley, Michael K. Gilson - Communications Chemistry 2020 cited by 304
- Development and Benchmarking of Open Force Field v1.0.0—the Parsley Small-Molecule Force Field
Authors: Yudong Qiu, Daniel G. A. Smith, Simon Boothroyd, Hyesu Jang, David F. Hahn, Jeffrey Wagner, Caitlin C. Bannan, Trevor Gokey, Victoria T. Lim, Chaya Stern, Andrea Rizzi, Bryon Tjanaka, Gary Tresadern, Xavier Lucas, Michael R. Shirts, Michael K. Gilson, John D. Chodera, Christopher I. Bayly, David L. Mobley, Lee‐Ping Wang - Journal of Chemical Theory and Computation 2021 cited by 170
- Alignment-Free Antimicrobial Peptide Predictors: Improving Performance by a Thorough Analysis of the Largest Available Data Set
Authors: Sergio Alejandro Pinacho-Castellanos, César R. García-Jacas, Michael K. Gilson, Carlos A. Brizuela - Journal of Chemical Information and Modeling, J. Chem. Inf. Model. 2021 cited by 82
- D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies
Authors: Conor D. Parks, Zied Gaieb, Michael Chiu, Huanwang Yang, Chenghua Shao, W. Patrick Walters, Johanna M. Jansen, Georgia B. McGaughey, Richard A. Lewis, Scott D. Bembenek, Michael K. Ameriks, Tara Mirzadegan, Stephen K. Burley, Rommie E. Amaro, Michael K. Gilson - Journal of Computer-Aided Molecular Design, J. Comput. Aided Mol. Des. 2019 cited by 145
- Automation of absolute protein-ligand binding free energy calculations for docking refinement and compound evaluation
Authors: Germano Heinzelmann, Michael K. Gilson - Scientific Reports 2021 cited by 119
- D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings
Authors: Zied Gaieb, Conor D. Parks, Michael Chiu, Huanwang Yang, Chenghua Shao, W. Patrick Walters, Millard H. Lambert, Neysa Nevins, Scott D. Bembenek, Michael K. Ameriks, Tara Mirzadegan, Stephen K. Burley, Rommie E. Amaro, Michael K. Gilson - Journal of Computer-Aided Molecular Design, J. Comput. Aided Mol. Des. 2019 cited by 154
- D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies
Authors: Zied Gaieb, Shuai Liu, Symon Gathiaka, Michael Chiu, Huanwang Yang, Chenghua Shao, Victoria A. Feher, W. Patrick Walters, Bernd Kuhn, M.G. Rudolph, S.K. Burley, Michael K. Gilson, Rommie E. Amaro - Journal of Computer-Aided Molecular Design, J. Comput. Aided Mol. Des. 2017 cited by 202
- Improving Structure-Based Virtual Screening with Ensemble Docking and Machine Learning
Authors: Joel Ricci-Lopez, Sergio A. Aguila, Michael K. Gilson, Carlos A. Brizuela - Journal of Chemical Information and Modeling, J. Chem. Inf. Model. 2021 cited by 72
- Escaping Atom Types in Force Fields Using Direct Chemical Perception
Authors: David L. Mobley, Caitlin C. Bannan, Andrea Rizzi, Christopher I. Bayly, John D. Chodera, Victoria T. Lim, Nathan M. Lim, Kyle A. Beauchamp, David R. Slochower, Michael R. Shirts, Michael K. Gilson, Peter Eastman - Journal of Chemical Theory and Computation 2018 cited by 228
- Calculation of the total electrostatic energy of a macromolecular system: Solvation energies, binding energies, and conformational analysis
Authors: Michael K. Gilson, Barry Honig - Proteins Structure Function and Bioinformatics 1988 cited by 853
- Grid inhomogeneous solvation theory: Hydration structure and thermodynamics of the miniature receptor cucurbit[7]uril
Authors: Crystal N. Nguyen, Tom Young, Michael K. Gilson - The Journal of Chemical Physics 2012 cited by 335
- D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions
Authors: Symon Gathiaka, Shuai Liu, Michael Chiu, Huanwang Yang, Jeanne A. Stuckey, You Na Kang, Jim Delproposto, Ginger Kubish, James B. Dunbar, Heather A. Carlson, S.K. Burley, W. Patrick Walters, Rommie E. Amaro, Victoria A. Feher, Michael K. Gilson - Journal of Computer-Aided Molecular Design, J. Comput. Aided Mol. Des. 2016 cited by 227
- BindingDB: A Web-Accessible Molecular Recognition Database
Authors: Xi Chen, Ming Liu, Michael K. Gilson - Combinatorial Chemistry & High Throughput Screening 2001 cited by 225
- Dynamic architecture of a protein kinase
Authors: Christopher L. McClendon, Alexandr P. Kornev, Michael K. Gilson, Susan S. Taylor - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 265
- Substrate-driven chemotactic assembly in an enzyme cascade
Authors: Xi Zhao, Henri Palacci, Vinita Yadav, Michelle M. Spiering, Michael K. Gilson, Peter J. Butler, Henry Hess, Stephen J. Benkovic, Ayusman Sen - Nature Chemistry 2017 cited by 173
- Ligand configurational entropy and protein binding
Authors: Chia‐en A. Chang, Wei Chen, Michael K. Gilson - National Academy of Sciences, Proceedings of the National Academy of Sciences 2007 cited by 433
- Absolute binding free energy calculations improve enrichment of actives in virtual compound screening
Authors: Mudong Feng, Germano Heinzelmann, Michael K. Gilson - Scientific Reports 2022 cited by 49
