Mingyao Li
Active 2005–2025
- 192
- Papers
- 37,940
- Citations
- 90
- h-index
- 177
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology53.5%
- Medicine34.2%
- Immunology and Microbiology4.2%
- Neuroscience3.5%
- Computer Science1.4%
- Nursing0.5%
- Other2.7%
Topics
- Genetic Associations and Epidemiology6%
- Single-cell and spatial transcriptomics6%
- Gene expression and cancer classification2.7%
- Bioinformatics and Genomic Networks2.3%
- Retinal Diseases and Treatments2.2%
- Diabetes, Cardiovascular Risks, and Lipoproteins1.9%
- Other78.9%
Coauthors
- Muredach P. Reilly29
- Håkon Håkonarson22
- Jian Hu18
- Kai Wang15
- Katalin Suszták15
- Joseph Glessner14
- Struan F.A. Grant14
- Hanying Yan13
- Kyle Coleman13
- Jonathan P. Bradfield12
- Amelia Schroeder11
- Edward B. Lee10
- Daniel J. Rader9
- Chenyi Xue8
- Daiwei Zhang8
- Dwight Stambolian8
- Hanrui Zhang8
- Edward C. Frackelton7
- Gang Hu7
- Linghua Wang7
- Alexander C. Bashore6
- Benjamin F. Voight6
- Guangchun Han6
- James M. Wilson6
All papers
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Authors: Jian Hu, Xiangjie Li, Kyle Coleman, Amelia Schroeder, Nan Ma, David J. Irwin, Edward B. Lee, Russell T. Shinohara, Mingyao Li - Nature Methods 2021 cited by 1,095
- Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance
Authors: Yanshuo Chu, Enyu Dai, Yating Li, Guangchun Han, Guangsheng Pei, Davis R. Ingram, Krupa Thakkar, Jiang‐Jiang Qin, Minghao Dang, Xiuning Le, Can Hu, Qing Deng, Ansam Sinjab, Pravesh Gupta, Ruiping Wang, Dapeng Hao, Fuduan Peng, Xinmiao Yan, Yunhe Liu, Shumei Song, Shaojun Zhang, John V. Heymach, Alexandre Reuben, Yasir Y. Elamin, Melissa Pool Pizzi, Yang Lü, Rossana Lazcano, Jian Hu, Mingyao Li, Michael A. Curran, P. Andrew Futreal, Anirban Maitra, Amir A. Jazaeri, Jaffer A. Ajani, Charles Swanton, Xiangdong Cheng, Hussein A. Abbas, Maura L. Gillison, Krishna Bhat, Alexander J. Lazar, Michael R. Green, Kevin Litchfield, Humam Kadara, Cassian Yee, Linghua Wang - Nature Medicine 2023 cited by 485
- A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants
Authors: Lars G. Fritsche, Wilmar Igl, Jessica N. Cooke Bailey, Felix Graßmann, Sebanti Sengupta, Jennifer L. Bragg‐Gresham, Kathryn P. Burdon, Scott J. Hebbring, Cindy Wen, Mathias Gorski, Ivana K. Kim, David Cho, Donald J. Zack, Eric H. Souied, Hendrik P. N. Scholl, Elisa Bala, Kristine E Lee, David J. Hunter, Rebecca J. Sardell, Paul Mitchell, Joanna E. Merriam, Valentina Cipriani, Joshua Hoffman, Tina Schick, Yara Lechanteur, Robyn H. Guymer, Matthew P. Johnson, Yingda Jiang, Chloë M. Stanton, Gabriëlle H.S. Buitendijk, Xiaowei Zhan, Alan Kwong, Alexis Boleda, Matthew Brooks, Linn Gieser, Rinki Ratnapriya, Kari Branham, Johanna R. Foerster, John R. Heckenlively, Mohammad Othman, Brendan J. Vote, Helena H. Liang, Emmanuelle Souzeau, Ian L. McAllister, Timothy Isaacs, Janette M. Hall, Stewart Lake, David A. Mackey, Ian J. Constable, Jamie E. Craig, Terrie Kitchner, Zhenglin Yang, Zhiguang Su, Hongrong Luo, Daniel Chen, Hong Ouyang, Ken Flagg, Danni Lin, Guanping Mao, Henry Ferreyra, Klaus Stark, Claudia N. von Strachwitz, Armin Wolf, Caroline Brandl, Guenther Rudolph, Matthias Olden, Margaux A. Morrison, Denise J. Morgan, Matthew Schu, Jeeyun Ahn, Giuliana Silvestri, Evangelia E. Tsironi, Kyu Hyung Park, Lindsay A. Farrer, Anton Orlin, Alexander J. Brucker, Mingyao Li, Christine A. Curcio, Saddek Mohand‐Saïd, José‐Alain Sahel, Isabelle Audo, Mustapha Benchaboune, Angela J. Cree, Christina Rennie, Srinivas Goverdhan, Michelle Grunin, Shira Hagbi-Levi, Peter A. Campochiaro, Nicholas Katsanis, Frank G. Holz, Frédéric Blond, Hélène Blanché, Jean‐François Deleuze, Robert P. Igo, Barbara Truitt, Neal S. Peachey, Stacy M. Meuer, Chelsea E. Myers, Emily Moore, Ronald Klein and 62 more - Nature Genetics 2015 cited by 1,620
- Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human
Authors: Huize Pan, Chenyi Xue, Benjamin J. Auerbach, Jiaxin Fan, Alexander C. Bashore, Jian Cui, Dina Y. Yang, Sarah B. Trignano, Wen Liu, Jianting Shi, Chinyere O. Ihuegbu, Erin Bush, Jeremy Worley, Lukas Vlahos, Pasquale Laise, Robert A. Solomon, E. Sander Connolly, Andrea Califano, Peter A. Sims, Hanrui Zhang, Mingyao Li, Muredach P. Reilly - Circulation 2020 cited by 620
- Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis
Authors: Xiangjie Li, Kui Wang, Yafei Lyu, Huize Pan, Jingxiao Zhang, Dwight Stambolian, Katalin Suszták, Muredach P. Reilly, Gang Hu, Mingyao Li - Nature Communications 2020 cited by 433
- SAVER: gene expression recovery for single-cell RNA sequencing
Authors: Mo Huang, Jingshu Wang, Eduardo A. Torre, Hannah Dueck, Sydney M. Shaffer, Roberto Bonasio, John I. Murray, Arjun Raj, Mingyao Li, Nancy R. Zhang - Nature Methods 2018 cited by 856
- Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
Authors: Jihwan Park, Rojesh Shrestha, Chengxiang Qiu, Ayano Kondo, Shizheng Huang, Max Werth, Mingyao Li, Jonathan Barasch, Katalin Suszták - Science 2018 cited by 1,168
- Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology
Authors: Daiwei Zhang, Amelia Schroeder, Hanying Yan, Haochen Yang, Jian Hu, Michelle Y. Y. Lee, Kyung S. Cho, Katalin Suszták, Xiaowei Xu, Michael D. Feldman, Edward B. Lee, Emma E. Furth, Linghua Wang, Mingyao Li - Nature Biotechnology 2024 cited by 187
- β-Hydroxybutyrate suppresses colorectal cancer
Authors: Oxana Dmitrieva-Posocco, Andrea C. Wong, Patrick Lundgren, Aleksandra Golos, Hélène C. Descamps, Lenka Dohnalová, Zvi Cramer, Yuhua Tian, Brian Yueh, Onur Eskiocak, Gabor Egervári, Yemin Lan, Jinping Liu, Jiaxin Fan, Jihee Kim, Bhoomi Madhu, Kai Markus Schneider, Svetlana Khoziainova, Natalia Andreeva, Qiaohong Wang, Ning Li, Emma E. Furth, Will Bailis, Judith R. Kelsen, Kathryn E. Hamilton, Klaus H. Kaestner, Shelley L. Berger, Jonathan A. Epstein, Rajan Jain, Mingyao Li, Semir Beyaz, Christopher J. Lengner, Bryson W. Katona, Sergei I. Grivennikov, Christoph A. Thaiss, Maayan Levy - Nature 2022 cited by 313
- Biological, clinical and population relevance of 95 loci for blood lipids
Authors: Tanya M. Teslovich, Kiran Musunuru, Albert V. Smith, Andrew C. Edmondson, Ioannis M. Stylianou, Masahiro Koseki, James P. Pirruccello, Samuli Ripatti, Daniel I. Chasman, Cristen J. Willer, Christopher T. Johansen, Sigrid W. Fouchier, Aaron Isaacs, Gina M. Peloso, Maja Barbalić, Sally L. Ricketts, Joshua C. Bis, Yurii S. Aulchenko, Guðmar Þorleifsson, Mary F. Feitosa, John C. Chambers, Marju Orho‐Melander, Olle Melander, Toby Johnson, Xiaohui Li, Xiuqing Guo, Mingyao Li, Yoon Shin Cho, Min Jin Go, Young Jin Kim, Jong‐Young Lee, Taesung Park, Kyunga Kim, Xueling Sim, Rick Twee‐Hee Ong, Damien C. Croteau‐Chonka, Leslie A. Lange, Joshua D. Smith, Kijoung Song, Jing Hua Zhao, Xin Yuan, Jian’an Luan, Claudia Lamina, Andreas Ziegler, Weihua Zhang, Robert Y.L. Zee, Alan F. Wright, Jacqueline C.M. Witteman, James F. Wilson, Gonneke Willemsen, H.‐Erich Wichmann, John B. Whitfield, Dawn Waterworth, Nicholas J. Wareham, Gérard Waeber, Péter Vollenweider, Benjamin F. Voight, Véronique Vitart, André G. Uitterlinden, Manuela Uda, Jaakko Tuomilehto, John R. Thompson, Toshiko Tanaka, Ida Surakka, Heather M. Stringham, Tim D. Spector, Nicole Soranzo, Johannes H. Smit, Juha Sinisalo, Kaisa Silander, Eric J.G. Sijbrands, Angelo Scuteri, James Scott, David Schlessinger, Serena Sanna, Veikko Salomaa, Juha Saharinen, Chiara Sabatti, Aimo Ruokonen, Igor Rudan, Lynda M. Rose, Robert Roberts, Mark J. Rieder, Bruce M. Psaty, Peter P. Pramstaller, Irene Pichler, Markus Perola, Brenda W.J.H. Penninx, Nancy L. Pedersen, Cristian Pattaro, Alex Parker, Guillaume Paré, Ben A. Oostra, Christopher J. O’Donnell, Markku S. Nieminen, Deborah A. Nickerson, Grant W. Montgomery, Thomas Meitinger, Ruth McPherson, Mark I. McCarthy and 109 more - Nature 2010 cited by 3,704
- openalex_id:w2145813488
Authors: Benjamin F. Voight, Gina M. Peloso, Marju Orho‐Melander, Ruth Frikke‐Schmidt, Maja Barbalić, Majken K. Jensen, George Hindy, Hilma Hólm, Eric L. Ding, Toby Johnson, Heribert Schunkert, Nilesh J. Samani, Robert Clarke, Jemma C. Hopewell, John F. Thompson, Mingyao Li, Guðmar Þorleifsson, Christopher Newton‐Cheh, Kiran Musunuru, James P. Pirruccello, Danish Saleheen, Li Chen, Alexandre F.R. Stewart, Arne Schillert, Unnur Þorsteinsdóttir, Guðmundur Þorgeirsson, Sonia S. Anand, James C. Engert, Thomas M. Morgan, John A. Spertus, Monika Stoll, Klaus Berger, Nicola Martinelli, Domenico Girelli, Pascal McKeown, Christopher Patterson, Stephen E. Epstein, Joseph M. Devaney, Mary-Susan Burnett, Vincent Mooser, Samuli Ripatti, Ida Surakka, Markku S. Nieminen, Juha Sinisalo, Marja‐Liisa Lokki, Markus Perola, Aki S. Havulinna, Ulf dé Fairé, Bruna Gigante, Erik Ingelsson, Tanja Zeller, Philipp S. Wild, Paul I. W. de Bakker, Olaf H. Klungel, Anke H. Maitland‐van der Zee, Bas Peters, Anthonius de Boer, Diederick E. Grobbee, Pieter W. Kamphuisen, Vera H.M. Deneer, Clara C. Elbers, N. Charlotte Onland‐Moret, Marten H. Hofker, Cisca Wijmenga, W. M. Monique Verschuren, Jolanda M.A. Boer, Yvonne T. van der Schouw, Asif Rasheed, Philippe Frossard, Serkalem Demissie, Cristen J. Willer, Ron Do, José M. Ordovás, Gonçalo R. Abecasis, Michael Boehnke, Karen L. Mohlke, Mark J. Daly, Candace Guiducci, Noël P. Burtt, Aarti Surti, Elena González, Shaun Purcell, Stacey Gabriel, Jaume Marrugat, John F. Peden, Jeanette Erdmann, Patrick Diemert, Christina Willenborg, Inke R. König, Marcus Fischer, Christian Hengstenberg, Andreas Ziegler, Ian Buysschaert, Diether Lambrechts, Frans Van de Werf, Keith A.A. Fox, Nour Eddine El Mokhtari, Deborah C. Rubin, Jürgen Schrezenmeir, Stefan Schreiber and 26 more cited by 2,293
- Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma
Authors: Ruiping Wang, Minghao Dang, Kazuto Harada, Guangchun Han, Fang Wang, Melissa Pool Pizzi, Meina Zhao, Ghia Tatlonghari, Shaojun Zhang, Dapeng Hao, Yang Lü, Shuangtao Zhao, Brian D. Badgwell, Mariela Blum Murphy, Namita Shanbhag, Jeannelyn S. Estrella, Sinchita Roy‐Chowdhuri, Ahmed Abdelhakeem, Yuanxin Wang, Guang Peng, Samir Hanash, George A. Călin, Xingzhi Song, Yanshuo Chu, Jianhua Zhang, Mingyao Li, Ken Chen, Alexander J. Lazar, P. Andrew Futreal, Shumei Song, Jaffer A. Ajani, Linghua Wang - Nature Medicine 2021 cited by 273
- Leveraging information in spatial transcriptomics to predict super-resolution gene expression from histology images in tumors
Authors: Minxing Pang, Kenong Su, Mingyao Li - 2021 cited by 117
- Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment
Authors: Leilei Zhong, Lutian Yao, Robert J. Tower, Yulong Wei, Zhen Miao, Jihwan Park, Rojesh Shrestha, Luqiang Wang, Wei Yu, Nicholas Holdreith, Xiaobin Huang, Yejia Zhang, Wei Tong, Yanqing Gong, Jaimo Ahn, Katalin Suszták, Nathaniel A. Dyment, Mingyao Li, Fanxin Long, Chider Chen, Patrick Seale, Ling Qin - eLife 2020 cited by 343
- Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease
Authors: Cardiogenics, Heribert Schunkert, Inke R. König, Sekar Kathiresan, Muredach P. Reilly, Themistocles L. Assimes, Hilma Hólm, Michael Preuß, Alexandre F.R. Stewart, Maja Barbalić, Christian Gieger, Devin Absher, Zouhair Aherrahrou, Hooman Allayee, David Altshuler, Sonia S. Anand, Karl Andersen, Jeffrey L. Anderson, Diego Ardissino, Stephen G. Ball, Anthony J. Balmforth, Timothy Barnes, Diane M. Becker, Lewis C. Becker, Klaus Berger, Joshua C Bis, S. Matthijs Boekholdt, Eric Boerwinkle, Peter S. Braund, Morris J Brown, Mary Susan Burnett, Ian Buysschaert, John F. Carlquist, Li Chen, Sven Cichon, Veryan Codd, R. W. Davies, George Dedoussis, Abbas Dehghan, Serkalem Demissie, Joseph M. Devaney, Patrick Diemert, Ron Do, Angela Doering, Sandra Eifert, Nour Eddine El Mokhtari, Stephen G. Ellis, Roberto Elosúa, James C. Engert, Stephen E. Epstein, Ulf dé Fairé, Marcus Fischer, Aaron R. Folsom, Jennifer Freyer, Bruna Gigante, Domenico Girelli, Sólveig Grétarsdóttir, Vilmundur Guðnason, Jeffrey R. Gulcher, Eran Halperin, Naomi Hammond, Stanley L. Hazen, Albert Hofman, Benjamin D. Horne, Thomas Illig, Carlos Iribarren, Gregory T. Jones, J. Wouter Jukema, Michael Kaiser, Lee M. Kaplan, John J.P. Kastelein, Kay‐Tee Khaw, Joshua W. Knowles, Genovefa Kolovou, Augustine Kong, Reijo Laaksonen, Diether Lambrechts, Karin Leander, Guillaume Lettre, Mingyao Li, Wolfgang Lieb, Christina Loley, Andrew Lotery, Pier Mannuccio Mannucci, Seraya Maouche, Nicola Martinelli, Pascal McKeown, Christa Meisinger, Thomas Meitinger, Olle Melander, Pier Angelica Merlini, Vincent Mooser, Thomas M. Morgan, Thomas W Mühleisen, Joseph B. Muhlestein, Thomas Münzel, Kiran Musunuru, Janja Nahrstaedt, Christopher P. Nelson, Markus M. Nöthen and 67 more - Nature Genetics 2011 cited by 1,951
- Adeno-Associated Virus-Induced Dorsal Root Ganglion Pathology
Authors: Juliette Hordeaux, Elizabeth L. Buza, Cecilia Dyer, Tamara Goode, Thomas W. Mitchell, Laura K. Richman, Nathan Denton, Christian Hinderer, Nathan Katz, Ralf S. Schmid, R. Colin Miller, Gourav Roy Choudhury, Makoto Horiuchi, Kalyani Nambiar, Hanying Yan, Mingyao Li, James M. Wilson - Human Gene Therapy 2020 cited by 251
- Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis
Authors: Xiumeng Hua, Gang Hu, Qingtao Hu, Yuan Chang, Yiqing Hu, Linlin Gao, Xiao Chen, Ping–Chang Yang, Yu Zhang, Mingyao Li, Jiangping Song - Circulation 2020 cited by 207
- Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization
Authors: Fengling Hu, Andrew A. Chen, Hannah Horng, Vishnu Bashyam, Christos Davatzikos, Aaron Alexander-Bloch, Mingyao Li, Haochang Shou, Theodore D. Satterthwaite, Meichen Yu, Russell T. Shinohara - NeuroImage 2023 cited by 141
- Deciphering tumor ecosystems at super resolution from spatial transcriptomics with TESLA
Authors: Jian Hu, Kyle Coleman, Daiwei Zhang, Edward B. Lee, Humam Kadara, Linghua Wang, Mingyao Li - Cell Systems 2023 cited by 95
- The Single-Cell Immunogenomic Landscape of B and Plasma Cells in Early-Stage Lung Adenocarcinoma
Authors: Dapeng Hao, Guangchun Han, Ansam Sinjab, Lorena I. Gomez-Bolanos, Rossana Lazcano, Alejandra G. Serrano, Sharia Hernandez, Enyu Dai, Xuanye Cao, Jian Hu, Minghao Dang, Ruiping Wang, Yanshuo Chu, Xingzhi Song, Jianhua Zhang, Edwin R. Parra, Jennifer A. Wargo, Stephen G. Swisher, Tina Cascone, Boris Sepesi, P. Andrew Futreal, Mingyao Li, Steven M. Dubinett, Junya Fujimoto, Luisa M. Solis Soto, Ignacio I. Wistuba, Christopher S. Stevenson, Avrum Spira, Shabnam Shalapour, Humam Kadara, Linghua Wang - Cancer Discovery 2022 cited by 155
- APOE and TREM2 regulate amyloid-responsive microglia in Alzheimer’s disease
Authors: Aivi T. Nguyen, Kui Wang, Gang Hu, Xuran Wang, Zhen Miao, Joshua A. Azevedo, EunRan Suh, Vivianna M. Van Deerlin, David Choi, Kathryn Roeder, Mingyao Li, Edward B. Lee - Acta Neuropathologica 2020 cited by 281
- The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation
Authors: Poonam Dhillon, Jihwan Park, Carmen Hurtado del Pozo, Lingzhi Li, Tomohito Doke, Shizheng Huang, Juanjuan Zhao, Hyun Mi Kang, Rojesh Shrestra, Michael S. Balzer, Shatakshee Chatterjee, Patricia Prado, Seung Yub Han, Hongbo Liu, Xin Sheng, Pieterjan Dierickx, Kirill Batmanov, Juan P. Romero, Felipe Prósper, Mingyao Li, Liming Pei, Junhyong Kim, Núria Montserrat, Katalin Suszták - Cell Metabolism 2020 cited by 175
- Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets
Authors: Zhen Miao, Michael S. Balzer, Ziyuan Ma, Hongbo Liu, Junnan Wu, Rojesh Shrestha, Tamás Arányi, Amy Kwan, Ayano Kondo, Marco Pontoglio, Junhyong Kim, Mingyao Li, Klaus H. Kaestner, Katalin Suszták - Nature Communications 2021 cited by 224
- PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
Authors: Kai Wang, Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F.A. Grant, Håkon Håkonarson, Maja Bućan - Genome Research 2007 cited by 1,907
