Roger J. Daly
Active 1988–2025
- 97
- Papers
- 17,943
- Citations
- 66
- h-index
- 94
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology56.9%
- Medicine31.2%
- Immunology and Microbiology3.9%
- Neuroscience2.4%
- Computer Science2%
- Chemistry1.1%
- Other2.5%
Topics
- Protein Kinase Regulation and GTPase Signaling3.6%
- Machine Learning in Bioinformatics3.3%
- Pancreatic and Hepatic Oncology Research3.1%
- Cancer Genomics and Diagnostics2.1%
- PI3K/AKT/mTOR signaling in cancer2%
- RNA and protein synthesis mechanisms1.9%
- Other84%
Coauthors
- Jiangning Song14
- Robert L. Sutherland13
- Elizabeth V. Nguyen12
- Elizabeth A. Musgrove8
- Geoffrey I. Webb8
- Fuyi Li7
- Jianmin Wu7
- Lisa G. Horvath7
- Ruth J. Lyons7
- Changyuan Hu6
- Xiuquan Ma6
- Alexander Swarbrick5
- André Leier5
- David R. Croucher5
- Howard Chan5
- Joseph Schlessinger5
- Lan K. Nguyen5
- Luxi Zhang5
- Naveid Ali5
- Paul Timpson5
- Sung‐Young Shin5
- Tatiana T. Marquez-Lago5
- Tatsuya Akutsu5
- Yanan Wang5
All papers
- iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Authors: Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Yanan Wang, Geoffrey I. Webb, Alexander Ian Smith, Roger J. Daly, Kuo-Chen Chou, Jiangning Song - Bioinformatics, Bioinform. 2018 cited by 694
- Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
Authors: Australian Pancreatic Cancer Genome Initiative, Andrew V. Biankin, Nicola Waddell, Karin S. Kassahn, Marie‐Claude Gingras, Lakshmi Muthuswamy, Amber L. Johns, David K. Miller, Peter J. Wilson, Ann‐Marie Patch, Jianmin Wu, David K. Chang, Mark J. Cowley, Brooke Gardiner, Sarah Song, Ivon Harliwong, Senel Idrisoglu, Craig Nourse, Ehsan Nourbakhsh, Suzanne Manning, Shivangi Wani, Milena Gongora, Marina Pajic, Christopher J. Scarlett, Anthony J. Gill, Andreia V. Pinho, Ilse Rooman, Matthew J. Anderson, Oliver Holmes, Conrad Leonard, Darrin F. Taylor, Scott Wood, Qinying Xu, Kátia Nones, J. Lynn Fink, Angelika N. Christ, Timothy J. C. Bruxner, Nicole Cloonan, Gabriel Kolle, Felicity Newell, Mark Pinese, R. Scott Mead, Jeremy L. Humphris, Warren Kaplan, Marc D. Jones, Emily K. Colvin, Adnan Nagrial, Emily S. Humphrey, Angela Chou, Venessa Chin, Lorraine A. Chantrill, Amanda Mawson, Jaswinder S. Samra, James G. Kench, Jessica A. Lovell, Roger J. Daly, Neil D. Merrett, Christopher W. Toon, Krishna Epari, Nam Q. Nguyen, Andrew P. Barbour, Nikolajs Zeps, Nipun Kakkar, Fengmei Zhao, Yuan Wu, Min Wang, Donna M. Muzny, William E. Fisher, F. Charles Brunicardi, Sally E. Hodges, Jeffrey G. Reid, Jennifer Drummond, Kyle Chang, Yi Han, Lora Lewis, Huyen Dinh, Christian Buhay, Timothy A. Beck, Lee E. Timms, Michelle Sam, Kimberly Begley, Andrew Brown, Deepa Pai, Ami Panchal, Nicholas Buchner, Richard de Borja, Robert E. Denroche, Christina K. Yung, Stefano Serra, Nicole Onetto, Debabrata Mukhopadhyay, Ming‐Sound Tsao, Patricia A. Shaw, Gloria M. Petersen, Steven Gallinger, Ralph H. Hruban, Anirban Maitra, Christine A. Iacobuzio–Donahue, Richard D. Schulick, Christopher L. Wolfgang and 27 more - Nature 2012 cited by 2,128
- iLearnPlus:a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
Authors: Zhen Chen, Pei Zhao, Chen Li, Fuyi Li, Dongxu Xiang, Yongzi Chen, Tatsuya Akutsu, Roger J. Daly, Geoffrey I. Webb, Quanzhi Zhao, Lukasz Kurgan, Jiangning Song - Nucleic Acids Research 2021 cited by 280
- iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data
Authors: Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song - Briefings in Bioinformatics, Briefings Bioinform. 2019 cited by 437
- PTP1B Is an Intracellular Checkpoint that Limits T-cell and CAR T-cell Antitumor Immunity
Authors: Florian Wiede, Kun‐Hui Lu, Xin Du, Mara N. Zeissig, Rachel Xu, Pei Kee Goh, Chrysovalantou E. Xirouchaki, Samuel J. Hogarth, Spencer Greatorex, Kevin Sek, Roger J. Daly, Paul A. Beavis, Phillip K. Darcy, Nicholas K. Tonks, Tony Tiganis - Cancer Discovery 2021 cited by 137
- FAK signaling in human cancer as a target for therapeutics
Authors: Brian Y. Lee, Paul Timpson, Lisa G. Horvath, Roger J. Daly - Pharmacology & Therapeutics 2014 cited by 453
- Mesenchymal Niche-Derived Neuregulin-1 Drives Intestinal Stem Cell Proliferation and Regeneration of Damaged Epithelium
Authors: Thierry Jardé, Wing Hei Chan, Fernando J. Rossello, Tanvir Kaur Kahlon, Mandy Theocharous, Teni Kurian Arackal, Tracey J. Flores, Mégane Giraud, Elizabeth A. Richards, Eva L. Chan, Genevieve Kerr, Rebekah Engel, Mirsada Prasko, Jacqueline F. Donoghue, Shin‐ichi Abé, Toby J. Phesse, Christian M. Nefzger, Paul McMurrick, David Powell, Roger J. Daly, José M. Polo, Helen E. Abud - Cell stem cell 2020 cited by 158
- HNF4A and GATA6 Loss Reveals Therapeutically Actionable Subtypes in Pancreatic Cancer
Authors: Holly Brunton, Giuseppina Caligiuri, Richard Cunningham, Rosanna Upstill‐Goddard, Ulla‐Maja Bailey, Ian Garner, Craig Nourse, Stephan B. Dreyer, Marc D. Jones, Kim Moran‐Jones, Derek Wright, Viola Paulus-Hock, Colin Nixon, Gemma Thomson, Nigel B. Jamieson, Grant A. McGregor, Lisa Evers, Colin J. McKay, Aditi Gulati, Rachel Brough, Ilirjana Bajrami, Stephen J. Pettitt, Michele Dziubinski, Simon T. Barry, Robert Grützmann, Robert Brown, Edward Curry, Sarah Allison, Andrew V. Biankin, David K. Chang, Susanna L. Cooke, Stephan B. Dreyer, Paul Grimwood, Shane Kelly, John L. Marshall, Brian McDade, Daniel L. McElroy, Donna Ramsay, Rosanna Upstill‐Goddard, Selma Rebus, Jane Hair, Nigel B. Jamieson, Colin J. McKay, Paul Westwood, Nicola Williams, Fraser R. Duthie, Andrew V. Biankin, Amber L. Johns, Amanda Mawson, David K. Chang, Christopher J. Scarlett, Mary-Anne L. Brancato, Sarah J. Rowe, Skye H. Simpson, Mona Martyn-Smith, Michelle T. Thomas, Lorraine A. Chantrill, Venessa Chin, Angela Chou, Mark J. Cowley, Jeremy L. Humphris, R. Scott Mead, Adnan Nagrial, Marina Pajic, Jessica Pettit, Mark Pinese, Ilse Rooman, Jianmin Wu, Tao Jiang, Renee DiPietro, Clare Watson, Angela Steinmann, Hong Ching Lee, Rachel Wong, Andreia V. Pinho, Marc Giry-Laterrière, Roger J. Daly, Elizabeth A. Musgrove, Robert L. Sutherland, Sean M. Grimmond, Nicola Waddell, Karin S. Kassahn, David K. Miller, Peter J. Wilson, Ann-Marie Patch, Sarah Song, Ivon Harliwong, Senel Idrisoglu, Ehsan Nourbakhsh, Suzanne Manning, Shivangi Wani, Milena Gongora, Matthew J. Anderson, Oliver Holmes, Conrad Leonard, Darrin F. Taylor, Scott Wood, Christina Xu, Kátia Nones, J. Lynn Fink and 105 more - Cell Reports 2020 cited by 127
- Dual-specificity phosphatases: critical regulators with diverse cellular targets
Authors: Kate Patterson, Tilman Brummer, Philippa M. O’Brien, Roger J. Daly - Biochemical Journal 2009 cited by 748
- Cell graph neural networks enable the precise prediction of patient survival in gastric cancer
Authors: Yanan Wang, Yu Guang Wang, Changyuan Hu, Ming Li, Yanan Fan, Nina Otter, Ikuan Sam, Hongquan Gou, Yiqun Hu, Terry Kwok, John Zalcberg, Alex Boussioutas, Roger J. Daly, Guido Montúfar, Píetro Lió, Dakang Xu, Geoffrey I. Webb, Jiangning Song - npj Precision Oncology 2022 cited by 65
- The SH2 and SH3 domain-containing protein GRB2 links receptor tyrosine kinases to ras signaling
Authors: Eve J. Lowenstein, Roger J. Daly, Andreas Batzer, W. Li, Ben Margolis, Reiner Lammers, A. Ullrich, Edward Y. Skolnik, Dafna Bar‐Sagi, Joseph Schlessinger - Cell 1992 cited by 1,657
- FGFR3 signaling and function in triple negative breast cancer
Authors: Nicole J. Chew, Elizabeth V. Nguyen, Shih‐Ping Su, Karel Novy, Howard Chan, Lan K. Nguyen, Jennii Luu, Kaylene J. Simpson, Rachel S. Lee, Roger J. Daly - Cell Communication and Signaling 2020 cited by 77
- Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification
Authors: Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song - Bioinformatics, Bioinform. 2023 cited by 22
- Evaluation of FGFR targeting in breast cancer through interrogation of patient-derived models
Authors: Nicole J. Chew, Terry C.C. Lim Kam Sian, Elizabeth V. Nguyen, Sung‐Young Shin, Jessica Yang, Mun N. Hui, Niantao Deng, Catriona McLean, Alana L. Welm, Elgene Lim, Peter Gregory, Tim Nottle, Tali Lang, Melissa Vereker, Gary Richardson, Genevieve Kerr, Diana Micati, Thierry Jardé, Helen E. Abud, Rachel S. Lee, Alexander Swarbrick, Roger J. Daly - Breast Cancer Research 2021 cited by 49
- Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment
Authors: Elizabeth V. Nguyen, Brooke Pereira, Mitchell G. Lawrence, Xiuquan Ma, Richard J. Rebello, Howard Chan, Birunthi Niranjan, Yunjian Wu, Stuart J. Ellem, Xiaoqing Guan, Jianmin Wu, Joanna N. Skhinas, Thomas R. Cox, Gail P. Risbridger, Renea A. Taylor, Natalie L. Lister, Roger J. Daly - Molecular & Cellular Proteomics 2019 cited by 104
- Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome
Authors: Fuyi Li, Chen Li, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Anthony W. Purcell, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, Jiangning Song, Kuo-Chen Chou - Bioinformatics, Bioinform. 2018 cited by 173
- A distinct plasma lipid signature associated with poor prognosis in castration‐resistant prostate cancer
Authors: Hui‐Ming Lin, Kate Mahon, Jacquelyn M. Weir, Piyushkumar A. Mundra, Calan Spielman, Karen Briscoe, Howard Gurney, Girish Mallesara, Gavin Marx, Martin R. Stockler, Robert G. Parton, Andrew J. Hoy, Roger J. Daly, Peter J. Meikle, Lisa G. Horvath - International Journal of Cancer 2017 cited by 83
- INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer
Authors: Samuel J. Rodgers, Lisa M. Ooms, Viola Oorschot, Ralf B. Schittenhelm, Elizabeth V. Nguyen, Sabryn A. Hamila, Natalie K. Rynkiewicz, Rajendra Gurung, Matthew J. Eramo, Absorn Sriratana, Clare G. Fedele, Franco Caramia, Sherene Loi, Genevieve Kerr, Helen E. Abud, Georg Ramm, Antonella Papa, Andrew M. Ellisdon, Roger J. Daly, Catriona McLean, Christina A. Mitchell - Nature Communications 2021 cited by 61
- The kinome 'at large' in cancer
Authors: Emmy D.G. Fleuren, Luxi Zhang, Jianmin Wu, Roger J. Daly - Nature reviews. Cancer 2016 cited by 271
- Intravital imaging technology guides FAK-mediated priming in pancreatic cancer precision medicine according to Merlin status
Authors: Kendelle J. Murphy, Daniel A. Reed, Claire Vennin, James R. W. Conway, Max Nobis, Julia Yin, Cecilia R. Chambers, Brooke Pereira, Victoria Lee, Elysse C. Filipe, Michael Trpceski, Shona Ritchie, Morghan C. Lucas, Sean Warren, Joanna N. Skhinas, Astrid Magenau, Xanthe L. Metcalf, Janett Stoehr, Gretel Major, Ashleigh Parkin, Romain Bidanel, Ruth J. Lyons, Anaiis Zaratzian, Michael Tayao, Andrew Da Silva, Lea Abdulkhalek, Australian Pancreatic Genome Initiative (APGI), Australian Pancreatic Cancer Matrix Atlas (APMA), Anthony J. Gill, Amber L. Johns, Andrew V. Biankin, Jaswinder S. Samra, Sean M. Grimmond, Angela Chou, Jacky G. Goetz, Michael S. Samuel, J. Guy Lyons, Andrew Burgess, C. Elizabeth Caldon, Lisa G. Horvath, Roger J. Daly, Nikolaj Gadegaard, Yingxiao Wang, Owen J. Sansom, Jennifer P. Morton, Thomas R. Cox, Marina Pajic, David Herrmann, Paul Timpson - Science Advances 2021 cited by 48
- Pediatric glioma histone H3.3 K27M/G34R mutations drive abnormalities in PML nuclear bodies
Authors: Hsiao P. J. Voon, Linda Hii, Andrew Garvie, Maheshi Udugama, Brian Krug, Caterina Russo, Anderly C. Chüeh, Roger J. Daly, Alison Morey, Toby D. M. Bell, Stephen J. Turner, Joseph Rosenbluh, Paul Daniel, Ron Firestein, Jeffrey R. Mann, Philippe Collas, Nada Jabado, Lee H. Wong - Genome biology 2023 cited by 20
- A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties
Authors: James M. Murphy, Qingwei Zhang, Samuel N. Young, Michael L. Reese, Fiona P. Bailey, Patrick A. Eyers, Daniela Ungureanu, Henrik M. Hammarén, Olli Silvennoinen, Leila N. Varghese, Kelan Chen, Anne Tripaydonis, Natalia Jura, Koichi Fukuda, Jun Qin, Zachary L. Nimchuk, Mary Beth Mudgett, Sabine Elowe, Christine L. Gee, Ling Liu, Roger J. Daly, Gerard Manning, Jeffrey J. Babon, Isabelle S. Lucet - Biochemical Journal 2013 cited by 287
- Circulating microRNAs are associated with docetaxel chemotherapy outcome in castration-resistant prostate cancer
Authors: H-M Lin, Lesley Castillo, Kate Mahon, Keng Hoong Chiam, Byeong Yeop Lee, Quoc Nguyen, Michael Boyer, Martin R. Stockler, Nick Pavlakis, Gavin Marx, Girish Mallesara, Howard Gurney, Susan J. Clark, Alexander Swarbrick, Roger J. Daly, Lisa G. Horvath - British Journal of Cancer 2014 cited by 140
- AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network
Authors: Afnan Abu-Thuraia, Marie-Anne Goyette, Jonathan Boulais, Carine Delliaux, Chloé Apcher, Céline Schott, Rony Chidiac, Halil Bagci, Marie‐Pier Thibault, Dominique Davidson, Mathieu Ferron, André Veillette, Roger J. Daly, Anne‐Claude Gingras, Jean‐Philippe Gratton, Jean‐François Côté - Nature Communications 2020 cited by 61
