Sam Griffiths‐Jones
Active 1999–2026
- Also published as
- Sam Griffiths-Jones
- 76
- Papers
- 54,241
- Citations
- 60
- h-index
- 72
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology70.1%
- Agricultural and Biological Sciences11.5%
- Medicine10.2%
- Immunology and Microbiology2.4%
- Neuroscience1.5%
- Environmental Science1.4%
- Other2.9%
Topics
- MicroRNA in disease regulation12.4%
- Cancer-related molecular mechanisms research7.4%
- RNA modifications and cancer5%
- Circular RNAs in diseases5%
- Genomics and Phylogenetic Studies4.4%
- RNA and protein synthesis mechanisms4.1%
- Other61.7%
Coauthors
- Alex Bateman20
- Sean R. Eddy9
- Anton I. Petrov8
- Todd M. Lowe8
- Elspeth A. Bruford7
- Robert D. Finn7
- Ana Kozomara6
- Guy Cochrane6
- Mhairi Marshall6
- Patricia P. Chan6
- Anton J. Enright5
- Richard Durbin5
- Simon Kay5
- Adam Frankish4
- Ajay Khanna4
- Arnab Pain4
- Eric P. Nawrocki4
- Jamie J. Cannone4
- Janusz M. Bujnicki4
- Kevin Howe4
- Matthew Ronshaugen4
- Paul P. Gardner4
- ROBERT FINN4
- Robin R. Gutell4
All papers
- miRBase: from microRNA sequences to function
Authors: Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 4,938
- Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Authors: Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 1,137
- RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Authors: Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 413
- miRBase: annotating high confidence microRNAs using deep sequencing data
Authors: Ana Kozomara, Sam Griffiths-Jones - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 5,206
- miRBase: microRNA sequences, targets and gene nomenclature
Authors: Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright - Nucleic Acids Research, Nucleic Acids Res. 2005 cited by 4,845
- Rfam: an RNA family database
Authors: Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy - Nucleic Acids Research, Nucleic Acids Res. 2003 cited by 1,633
- Rfam: annotating non-coding RNAs in complete genomes
Authors: Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman - Nucleic Acids Research, Nucleic Acids Res. 2004 cited by 1,751
- miRBase: tools for microRNA genomics
Authors: Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright - Nucleic Acids Research, Nucleic Acids Res. 2007 cited by 4,428
- Identification of Mammalian microRNA Host Genes and Transcription Units
Authors: Antony Rodríguez, Sam Griffiths‐Jones, Jennifer Ashurst, Allan Bradley - Genome Research 2004 cited by 2,005
- RNAcentral: a hub of information for non-coding RNA sequences
Authors: Blake A Sweeney, Anton I Petrov, Boris Burkov, Robert D Finn, Alex Bateman, Maciej Szymanski, Wojciech M Karlowski, Jan Gorodkin, Stefan E Seemann, Jamie J Cannone, Robin R Gutell, Petra Fey, Siddhartha Basu, Simon Kay, Guy Cochrane, Kostantinos Billis, David Emmert, Steven J Marygold, Rachael P Huntley, Ruth C Lovering, Adam Frankish, Patricia P Chan, Todd M Lowe, Elspeth Bruford, Ruth Seal, Jo Vandesompele, Pieter-Jan Volders, Maria Paraskevopoulou, Lina Ma, Zhang Zhang, Sam Griffiths-Jones, Janusz M Bujnicki, Pietro Boccaletto, Judith A Blake, Carol J Bult, Runsheng Chen, Yi Zhao, Valerie Wood, Kim Rutherford, Elena Rivas, James Cole, Stanley J F Laulederkind, Mary Shimoyama, Marc E Gillespie, Marija Orlic-Milacic, Ioanna Kalvari, Eric Nawrocki, Stacia R Engel, J Michael Cherry, SILVA Team, Tanya Z Berardini, Artemis Hatzigeorgiou, Dimitra Karagkouni, Kevin Howe, Paul Davis, Marcel Dinger, Shunmin He, Maki Yoshihama, Naoya Kenmochi, Peter F Stadler, Kelly P Williams - Nucleic Acids Research 2018 cited by 333
- miRBase: integrating microRNA annotation and deep-sequencing data
Authors: Ana Kozomara, Sam Griffiths-Jones - Nucleic Acids Research, Nucleic Acids Res. 2010 cited by 3,654
- Restoring the constitutional alignment with a restrictive kinematic protocol improves quantitative soft-tissue balance in total knee arthroplasty: a randomized controlled trial
Authors: Samuel J. MacDessi, William Griffiths-Jones, Darren B. Chen, Sam Griffiths‐Jones, Jil A. Wood, Ashish D. Diwan, Ian A. Harris - The Bone & Joint Journal 2019 cited by 213
- A uniform system for microRNA annotation
Authors: Victor Ambros, Bonnie Bartel, David P. Bartel, Christopher B. Burge, James C. Carrington, Xuemei Chen, Gideon Dreyfuss, Sean R. Eddy, Sam Griffiths‐Jones, Mhairi Marshall, Marjori Matzke, Gary Ruvkun, Thomas Tuschl - RNA 2003 cited by 1,902
- The microRNA Registry
Authors: Sam Griffiths-Jones - Nucleic Acids Research, Nucleic Acids Res. 2003 cited by 2,248
- Pfam: clans, web tools and services
Authors: Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman - Nucleic Acids Research, Nucleic Acids Res. 2005 cited by 2,346
- The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
Authors: Evelyn E. Schwager, Prashant P. Sharma, Thomas H. Clarke, Daniel J. Leite, Torsten Wierschin, Matthias Pechmann, Yasuko Akiyama‐Oda, Lauren A. Esposito, Jesper Bechsgaard, Trine Bilde, Alexandra D. Buffry, Hsu Chao, Huyen Dinh, HarshaVardhan Doddapaneni, Shannon Dugan, Cornelius Eibner, Cassandra G. Extavour, Peter Funch, Jessica E. Garb, Luis Baudouin Gonzalez, Vanessa L. González, Sam Griffiths‐Jones, Yi Han, Cheryl Y. Hayashi, Maarten Hilbrant, Daniel Hughes, Ralf Janßen, Sandra L. Lee, Ignacio Maeso, Shwetha C. Murali, Donna M. Muzny, Rodrigo Nunes da Fonseca, Christian Louis Bonatto Paese, Jiaxin Qu, Matthew Ronshaugen, Christoph Schomburg, Anna Schönauer, Angelika Stollewerk, Montserrat Torres-Oliva, Natascha Turetzek, Bram Vanthournout, John H. Werren, Carsten Wolff, Kim C. Worley, Gregor Bucher, Richard A. Gibbs, Jonathan A. Coddington, Hiroki Oda, Mario Stanke, Nadia A. Ayoub, Nikola-Michael Prpíc, Jean‐François Flot, Nico Posnien, Stephen Richards, Alistair P. McGregor - BMC Biology 2017 cited by 492
- Evolution of genes and genomes on the Drosophila phylogeny
Authors: Charles F. Aquadro, K. Ravi Ram, Mariana F. Wolfner, Andrew G. Clark, Alex Wong, Daniel A. Barbash, Nadia D. Singh, Anthony J. Greenberg, Melanie A. Huntley, Amanda M. Larracuente, Laura K. Sirot, Timothy B. Sackton, Daniel A. Barbash, Michael B. Eisen, Roger A. Hoskins, S Celniker, Michael B. Eisen, Adrianne B. Brand, Heather Ebling, Robert David, Tao Wei, Stephanie Bosak, Barry E. Garvin, Kevin McKernan, Marc Rubenfield, Jason M. Tsolas, Matthew J. Parisi, Erik Gustafson, David J. Saranga, Douglas R. Smith, Brendan McKernan, Sam Griffiths‐Jones, Casey Bergman, David Sturgill, Brian Oliver, Michael Parisi, Yu Zhang, Therese A. Markow, Thomas D. Watts, Carlos A. Machado, Luciano M. Matzkin, Roberta Kwok, Don Gilbert, Thomas C. Kaufman, Manolis Kellis, Pouya Kheradpour, M. D. Rasmussen, Leopold Parts, M. Kellis, Alexander Stark, Leopold Parts, Alan Dupes, David B. Jaffe, Abderrahim Farina, Sante Gnerre, Nga Thi Thuy Nguyen, Terry Shea, Andrew Zimmer, Evan Mauceli, Elizabeth Ryan, Imane Bourzgui, Ngawang Sherpa, Tsering Wangdi, Norbu Dhargay, Marcia Lara, Jinlei Liu, Rebecca Reyes, Helen Vassiliev, Erica Anderson, Shangtao Liu, Tanya Mihova, Tamrat Negash, C. Strader, Teena Mehta, Cecil Rise, Will Brockman, Marc Azer, Choe Norbu, Andrew Hollinger, Stuart Degray, P Fritz, Christopher Patti, Pema Phunkhang, Adam Brown, James C. Meldrim, Lu Shi, Pasang Bachantsang, Jennifer L. Hall, Yeshi Lokyitsang, Annie Lui, Katie D'Aco, Pen MacDonald, Maura Costello, Amr Abdouelleil, Dawa Thoulutsang, Louis Meneus, Mieke Citroen, Jane Wilkinson, Kerstin Lindblad-Toh, Christina R. Gearin and 315 more - Nature 2007 cited by 2,126
- RNAcentral: a comprehensive database of non-coding RNA sequences
Authors: Anton I. Petrov, Simon Kay, Ioanna Kalvari, Kevin Howe, Kristian Gray, Elspeth A. Bruford, Paul Kersey, Guy Cochrane, ROBERT FINN, Alex Bateman, Ana Kozomara, Sam Griffiths‐Jones, Adam Frankish, Christian Zwieb, Britney Y. Lau, Kelly P. Williams, Patricia P. Chan, Todd M. Lowe, Jamie J. Cannone, Robin R. Gutell, Magdalena A. Machnicka, Janusz M. Bujnicki, Maki Yoshihama, Naoya Kenmochi, Benli Chai, James R. Cole, M. Szymański, Wojciech M. Karłowski, Valerie Wood, Eva Huala, Tanya Berardini, Yi Zhao, Runsheng Chen, Weimin Zhu, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Joern Puetz, Peter F. Stadler, Daniel McDonald, Siddhartha Basu, Petra Fey, Stacia R. Engel, J. Michael Cherry, Pieter‐Jan Volders, Pieter Mestdagh, Jacek Wower, Michael B. Clark, Xiu Cheng Quek, Marcel E. Dinger - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 274
- A guide to naming human non‐coding RNA genes
Authors: Ruth L. Seal, Ling‐Ling Chen, Sam Griffiths‐Jones, Todd M. Lowe, Michael B. Mathews, Dawn O’Reilly, Andrew J. Pierce, Peter F. Stadler, Igor Ulitsky, Sandra L. Wolin, Elspeth A. Bruford - The EMBO Journal 2020 cited by 125
- Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
Authors: William C. Nierman, Arnab Pain, Michael J. Anderson, Jennifer R. Wortman, Sun Kim, Javier Arroyo, Matthew Berriman, Keietsu Abe, David B. Archer, Clara Bermejo, Joan W. Bennett, Paul Bowyer, Dan Chen, Matthew Collins, Richard Coulsen, Robert M. Davies, Paul S. Dyer, Mark Farman, Nadia Fedorova, Natalie D. Fedorova, Tamara V. Feldblyum, Rainer Fischer, Nigel Fosker, Audrey Fraser, José L. Garcı́a, Maria J. García, Arlette Goble, Gustavo H. Goldman, Katsuya Gomi, Sam Griffiths‐Jones, Ryan Gwilliam, Brian J. Haas, Hubertus Haas, David Harris, Hiroyuki Horiuchi, Jiaqi Huang, Sean Humphray, Javier Jiménez, Nancy P. Keller, Hoda Khouri, Katsuhiko Kitamoto, Tetsuo Kobayashi, Sven Konzack, Resham Kulkarni, Toshitaka Kumagai, Anne Lafton, Jean‐Paul Latgé, Weixi Li, Angela Lord, Charles Lu, William H. Majoros, Gregory S. May, Bruce L. Miller, Yasmin A. Mohamoud, Marı́a Molina, Michel Monod, Isabelle Mouyna, Stephanie Mulligan, Lee Murphy, Susan O’Neil, Ian T. Paulsen, Miguel Á. Peñalva, Mihaela Pertea, Claire Price, Bethan Pritchard, Michael A. Quail, Ester Rabbinowitsch, Neil Rawlins, Marie-Adele Rajandream, Utz Reichard, Hubert Renauld, Geoffrey D. Robson, Santiago Rodrı́guez de Córdoba, José M. Rodríguez-Peña, Catherine M. Ronning, Simon Rutter, Steven L. Salzberg, Miguel Sánchez, Juan C. Sánchez-Ferrero, David Saunders, Kathy Seeger, Rob Squares, Steven Squares, Michio Takeuchi, Fredj Tekaia, Geoffrey Turner, Carlos R. Vázquez de Aldana, Janice F. Weidman, Owen White, John R. Woodward, Jae‐Hyuk Yu, Claire M. Fraser, James E. Galagan, Kiyoshi Asai, Masayuki Machida, Neil Hall, Bart Barrell, David W. Denning - Nature 2005 cited by 1,413
- Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
Authors: James E. Galagan, Sarah E. Calvo, Christina A. Cuomo, Li‐Jun Ma, Jennifer R. Wortman, Serafim Batzoglou, Su-In Lee, Meray Baştürkmen, Christina C. Spevak, John Clutterbuck, Vladimir V. Kapitonov, Jerzy Jurka, Claudio Scazzocchio, Mark Farman, Jonathan A. Butler, Seth Purcell, Steve Harris, Gerhard H. Braus, Oliver Draht, Silke Busch, Christophe d’Enfert, Christiane Bouchier, Gustavo H. Goldman, Deborah Bell‐Pedersen, Sam Griffiths‐Jones, John H. Doonan, Jae‐Hyuk Yu, Kay Vienken, Arnab Pain, Michael Freitag, Eric U. Selker, David B. Archer, Miguel Á. Peñalva, Berl R. Oakley, Michelle Momany, Toshihiro Tanaka, Toshitaka Kumagai, Kiyoshi Asai, Masayuki Machida, William C. Nierman, David W. Denning, Mark X. Caddick, Michael J. Hynes, Mathieu Paoletti, Rainer Fischer, Bruce L. Miller, Paul S. Dyer, Matthew S. Sachs, Stephen A. Osmani, Bruce W. Birren - Nature 2005 cited by 1,388
- miRBase: The MicroRNA Sequence Database
Authors: Sam Griffiths‐Jones - Humana Press eBooks 2006 cited by 683
- Criteria for Annotation of Plant MicroRNAs
Authors: Blake C. Meyers, Michael J. Axtell, Bonnie Bartel, David P. Bartel, David C. Baulcombe, John L. Bowman, Xiaofeng Cao, James C. Carrington, Xuemei Chen, Pamela J. Green, Sam Griffiths‐Jones, Steven E. Jacobsen, Allison C. Mallory, Robert A. Martienssen, R. Scott Poethig, Yijun Qi, Hervé Vaucheret, Olivier Voinnet, Yuichiro Watanabe, Detlef Weigel, Jian‐Kang Zhu - The Plant Cell 2008 cited by 1,223
- Rfam: updates to the RNA families database
Authors: Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman - Nucleic Acids Research, Nucleic Acids Res. 2008 cited by 935
