William C. Nierman
Active 1979–2025
- 74
- Papers
- 22,987
- Citations
- 67
- h-index
- 73
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology46.2%
- Medicine23.2%
- Agricultural and Biological Sciences18.1%
- Environmental Science4.5%
- Immunology and Microbiology2.9%
- Engineering1.2%
- Other3.9%
Topics
- Genomics and Phylogenetic Studies5.8%
- Microbial Natural Products and Biosynthesis4.1%
- Fungal and yeast genetics research3.2%
- Vibrio bacteria research studies3.1%
- Plant Pathogens and Fungal Diseases3%
- Antifungal resistance and susceptibility3%
- Other77.8%
Coauthors
- Natalie D. Fedorova14
- Sun Kim14
- Deepak Bhatnagar11
- Thomas E. Cleveland10
- Catherine M. Ronning8
- Jennifer R. Wortman8
- Karen E. Nelson8
- Tamara V. Feldblyum8
- A. Scott Durkin7
- Dan Chen7
- Gary A. Payne7
- Jiujiang Yu7
- Jonathan A. Eisen7
- William Nelson7
- Daniel H. Haft6
- David DeShazer6
- Ian T. Paulsen6
- Yan Yu6
- Joan W. Bennett5
- Liliana Losada5
- Michelle Gwinn5
- Owen White5
- Robert J. Dodson5
- Robert T. DeBoy5
All papers
- SMURF: Genomic mapping of fungal secondary metabolite clusters
Authors: Nora Khaldi, Fayaz Seifuddin, Geoff Turner, Daniel H. Haft, William C. Nierman, Kenneth H. Wolfe, Natalie D. Fedorova - Fungal Genetics and Biology 2010 cited by 783
- Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Authors: Richard A. Gibbs, George M. Weinstock, Michael L. Metzker, Donna M. Muzny, Erica Sodergren, Steven E. Scherer, Graham Scott, David L. Steffen, Kim C. Worley, Paula E. Burch, Geoffrey Okwuonu, Sandra Hines, Lora Lewis, Christine DeRamo, Oliver Delgado, Shannon Dugan-Rocha, George Miner, Margaret Morgan, Alicia Hawes, Rachel Gill, Celera Robert A. Holt, Mark D. Adams, Peter G. Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo Chin, Cheryl Evans, Steve Ferriera, Carl Fosler, Anna Glodek, Zhiping Gu, D. E. Jennings, Cheryl Kraft, Trixie Nguyen, Cynthia Pfannkoch, Cynthia D. Sitter, Granger Sutton, J. Craig Venter, Trevor Woodage, Genome Therapeutics, Douglas Smith, Hongmei Lee, Erik Gustafson, Patrick Cahill, A. Kana, Lynn Doucette‐Stamm, Keith Weinstock, Kim Fechtel, Robert B. Weiss, Diane M. Dunn, NISC Comparative Sequencing Program, NHGRI, Eric D. Green, Robert W. Blakesley, Gerard G. Bouffard, Pieter J. de Jong, Kazutoyo Osoegawa, Baoli Zhu, Marco A. Marra, Jacqueline E. Schein, Ian Bosdet, Christopher D. Fjell, Steven J.M. Jones, Martin Krzywinski, Carrie Mathewson, Asim Siddiqui, Natasja Wye, John D. McPherson, BAC end sequencing: TIGR, Shaying Zhao, Claire M. Fraser, Jyoti Shetty, S. Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, William C. Nierman, Richard A. Gibbs, George M. Weinstock, Paul Havlak, Rui Chen, K. James Durbin, R. Simons, Yanru Ren, Xingzhi Song, Bingshan Li, Yue Liu, Xiang Qin, Analysis and annotation: Affymetrix, Simon Cawley, George M. Weinstock, Kim C. Worley, Austin J. Cooney, Richard A. Gibbs, Lisa M. D'Souza, Kirt Martin, Jia Qian Wu, Manuel L. Gonzalez‐Garay, Andrew Jackson, Kenneth J. Kalafus, Michael P. McLeod and 148 more - Nature 2004 cited by 2,220
- Genome sequencing and analysis of Aspergillus oryzae
Authors: Masayuki Machida, Kiyoshi Asai, Motoaki Sano, Toshihiro Tanaka, Toshitaka Kumagai, Goro Terai, Ken-Ichi Kusumoto, Toshihide Arima, Osamu Akita, Yutaka Kashiwagi, Keietsu Abe, Katsuya Gomi, Hiroyuki Horiuchi, Katsuhiko Kitamoto, Tetsuo Kobayashi, Michio Takeuchi, David W. Denning, James E. Galagan, William C. Nierman, Jiujiang Yu, David B. Archer, Joan W. Bennett, Deepak Bhatnagar, Thomas E. Cleveland, Natalie D. Fedorova, Osamu Gotoh, Hiroshi Horikawa, Akira Hosoyama, Masayuki Ichinomiya, Rie Igarashi, Kazuhiro Iwashita, Praveen R. Juvvadi, Masashi Kato, Yumiko Kato, Taishin Kin, Akira Kokubun, Hiroshi Maéda, Noriko Maeyama, Jun-ichi Maruyama, Hideki Nagasaki, Tasuku Nakajima, Ken Oda, Kinya Okada, Ian T. Paulsen, Kazutoshi Sakamoto, Toshihiko Sawano, Mikio Takahashi, Kumiko Takase, Yasunobu Terabayashi, Jennifer R. Wortman, Osamu Yamada, Youhei Yamagata, Hideharu Anazawa, Yoji Hata, Yoshinao Koide, Takashi Komori, Yasuji Koyama, Toshitaka Minetoki, Sivasundaram Suharnan, Akimitsu Tanaka, Katsumi Isono, Satoru Kuhara, Naotake Ogasawara, Hisashi Kikuchi - Nature 2005 cited by 1,266
- DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
Authors: John F. Heidelberg, Jonathan A. Eisen, William Nelson, Rebecca A. Clayton, Michelle Gwinn, Robert J. Dodson, Daniel H. Haft, Erin K. Hickey, Jeremy Peterson, Lowell Umayam, Steven R. Gill, Karen E. Nelson, Timothy D. Read, Hervé Tettelin, Delwood Richardson, Maria D. Ermolaeva, Jessica Vamathevan, Steven Bass, Haiying Qin, Ioana Dragoi, Patrick Sellers, Lisa McDonald, Teresa R. Utterback, Robert D. Fleishmann, William C. Nierman, Owen White, Steven L. Salzberg, Hamilton O. Smith, Rita R. Colwell, John J. Mekalanos, J. Craig Venter, Claire M. Fraser - Nature 2000 cited by 1,904
- Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
Authors: William C. Nierman, Arnab Pain, Michael J. Anderson, Jennifer R. Wortman, Sun Kim, Javier Arroyo, Matthew Berriman, Keietsu Abe, David B. Archer, Clara Bermejo, Joan W. Bennett, Paul Bowyer, Dan Chen, Matthew Collins, Richard Coulsen, Robert M. Davies, Paul S. Dyer, Mark Farman, Nadia Fedorova, Natalie D. Fedorova, Tamara V. Feldblyum, Rainer Fischer, Nigel Fosker, Audrey Fraser, José L. Garcı́a, Maria J. García, Arlette Goble, Gustavo H. Goldman, Katsuya Gomi, Sam Griffiths‐Jones, Ryan Gwilliam, Brian J. Haas, Hubertus Haas, David Harris, Hiroyuki Horiuchi, Jiaqi Huang, Sean Humphray, Javier Jiménez, Nancy P. Keller, Hoda Khouri, Katsuhiko Kitamoto, Tetsuo Kobayashi, Sven Konzack, Resham Kulkarni, Toshitaka Kumagai, Anne Lafton, Jean‐Paul Latgé, Weixi Li, Angela Lord, Charles Lu, William H. Majoros, Gregory S. May, Bruce L. Miller, Yasmin A. Mohamoud, Marı́a Molina, Michel Monod, Isabelle Mouyna, Stephanie Mulligan, Lee Murphy, Susan O’Neil, Ian T. Paulsen, Miguel Á. Peñalva, Mihaela Pertea, Claire Price, Bethan Pritchard, Michael A. Quail, Ester Rabbinowitsch, Neil Rawlins, Marie-Adele Rajandream, Utz Reichard, Hubert Renauld, Geoffrey D. Robson, Santiago Rodrı́guez de Córdoba, José M. Rodríguez-Peña, Catherine M. Ronning, Simon Rutter, Steven L. Salzberg, Miguel Sánchez, Juan C. Sánchez-Ferrero, David Saunders, Kathy Seeger, Rob Squares, Steven Squares, Michio Takeuchi, Fredj Tekaia, Geoffrey Turner, Carlos R. Vázquez de Aldana, Janice F. Weidman, Owen White, John R. Woodward, Jae‐Hyuk Yu, Claire M. Fraser, James E. Galagan, Kiyoshi Asai, Masayuki Machida, Neil Hall, Bart Barrell, David W. Denning - Nature 2005 cited by 1,413
- Ecology of aspergillosis: insights into the pathogenic potency of Aspergillus fumigatus and some other Aspergillus species
Authors: Caroline Paulussen, John E. Hallsworth, Sergio Álvarez‐Pérez, William C. Nierman, Philip Hamill, David Blain, Hans Rediers, Bart Lievens - Microbial Biotechnology 2016 cited by 332
- Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
Authors: James E. Galagan, Sarah E. Calvo, Christina A. Cuomo, Li‐Jun Ma, Jennifer R. Wortman, Serafim Batzoglou, Su-In Lee, Meray Baştürkmen, Christina C. Spevak, John Clutterbuck, Vladimir V. Kapitonov, Jerzy Jurka, Claudio Scazzocchio, Mark Farman, Jonathan A. Butler, Seth Purcell, Steve Harris, Gerhard H. Braus, Oliver Draht, Silke Busch, Christophe d’Enfert, Christiane Bouchier, Gustavo H. Goldman, Deborah Bell‐Pedersen, Sam Griffiths‐Jones, John H. Doonan, Jae‐Hyuk Yu, Kay Vienken, Arnab Pain, Michael Freitag, Eric U. Selker, David B. Archer, Miguel Á. Peñalva, Berl R. Oakley, Michelle Momany, Toshihiro Tanaka, Toshitaka Kumagai, Kiyoshi Asai, Masayuki Machida, William C. Nierman, David W. Denning, Mark X. Caddick, Michael J. Hynes, Mathieu Paoletti, Rainer Fischer, Bruce L. Miller, Paul S. Dyer, Matthew S. Sachs, Stephen A. Osmani, Bruce W. Birren - Nature 2005 cited by 1,388
- Aspergillus Galactosaminogalactan Mediates Adherence to Host Constituents and Conceals Hyphal β-Glucan from the Immune System
Authors: Fabrice N. Gravelat, Anne Beauvais, Hong Liu, Mark J. Lee, Brendan D. Snarr, Dan Chen, Wenjie Xu, Ilia Kravtsov, Christopher M.-Q. Hoareau, Ghyslaine Vanier, Mirjam Urb, Paolo Campoli, Qusai Al Abdallah, Mélanie Lehoux, Josée C. Chabot, Marie-Claude Ouimet, Stefanie D. Baptista, Jörg H. Fritz, William C. Nierman, Jean‐Paul Latgé, Aaron P. Mitchell, Scott G. Filler, Thierry Fontaine, Donald C. Sheppard - PLoS Pathogens 2013 cited by 326
- Evolution of sensory complexity recorded in a myxobacterial genome
Authors: Barry S. Goldman, William C. Nierman, D Kaiser, Steven Slater, A. Scott Durkin, Jonathan A. Eisen, Catherine M. Ronning, W. Brad Barbazuk, Mary Blanchard, Christopher M. Field, C Halling, Gregory Hinkle, O. Iartchuk, Sun Kim, Chris Mackenzie, Ramana Madupu, Nancy Miller, Alla Shvartsbeyn, Steven A. Sullivan, Mark D. Vaudin, Roger C. Wiegand, Heidi B. Kaplan - National Academy of Sciences, Proceedings of the National Academy of Sciences 2006 cited by 448
- Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling
Authors: Aubrie O’Rourke, Sinem Beyhan, Yongwook Choi, Pavel Morales, Agnes P. Chan, Josh L. Espinoza, Christopher L. Dupont, Kirsten J. Meyer, Amy L. Spoering, Kim Lewis, William C. Nierman, Karen E. Nelson - Antimicrobial Agents and Chemotherapy 2020 cited by 118
- SreA‐mediated iron regulation in Aspergillus fumigatus
Authors: Markus Schrettl, Sun Kim, Martin Eisendle, Claudia Kragl, William C. Nierman, Thorsten Heinekamp, Ernst R. Werner, Ilse D. Jacobsen, Paul Illmer, Hyojeong Yi, Axel A. Brakhage, Hubertus Haas - Molecular Microbiology 2008 cited by 274
- Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA
Authors: Robyn M. Perrin, Natalie D. Fedorova, Jin Woo Bok, Robert A. Cramer, Jennifer R. Wortman, Sun Kim, William C. Nierman, Nancy P. Keller - PLoS Pathogens 2007 cited by 363
- Genome Sequence of Aspergillus flavus NRRL 3357, a Strain That Causes Aflatoxin Contamination of Food and Feed
Authors: William C. Nierman, Jiujiang Yu, Natalie Abrams, Liliana Losada, Thomas E. Cleveland, Deepak Bhatnagar, Joan W. Bennett, Ralph A. Dean, Gary A. Payne - Genome Announcements 2015 cited by 125
- Whole genome comparison ofAspergillus flavusandA. oryzae
Authors: Gary A. Payne, William C. Nierman, Jennifer R. Wortman, Bethan Pritchard, Donald D. Brown, Ralph A. Dean, Deepak Bhatnagar, Thomas E. Cleveland, Masayuki Machida, J. Yu - Medical Mycology 2006 cited by 269
- The pH-Responsive PacC Transcription Factor of Aspergillus fumigatus Governs Epithelial Entry and Tissue Invasion during Pulmonary Aspergillosis
Authors: Margherita Bertuzzi, Markus Schrettl, Laura Alcázar‐Fuoli, Timothy C. Cairns, Alberto Muñoz, Louise A. Walker, Susanne Herbst, Maryam Safari, Angela M. Cheverton, Dan Chen, Hong Liu, Shinobu Saijo, Natalie D. Fedorova, Darius Armstrong‐James, Carol A. Munro, Nick D. Read, Scott G. Filler, Eduardo A. Espeso, William C. Nierman, Hubertus Haas, Elaine Bignell - PLoS Pathogens 2014 cited by 176
- Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Authors: Josh L. Espinoza, Chris L. Dupont, Aubrie O'Rourke, Sinem Beyhan, Pavel Morales, Amy Spoering, Kirsten J. Meyer, Agnes P. Chan, Yongwook Choi, William C. Nierman, Kim Lewis, Karen E. Nelson - PLoS Computational Biology, PLoS Comput. Biol. 2021 cited by 39
- The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
Authors: Timothy D. Read, Scott N. Peterson, Nicolas J. Tourasse, Les Baillie, Ian T. Paulsen, Karen E. Nelson, Hervé Tettelin, Derrick E. Fouts, Jonathan A. Eisen, Steven R. Gill, Erik Holtzapple, Ole Andreas Økstad, Erlendur Helgason, Jennifer Rilstone, Martin Wu, James F. Kolonay, Maureen J. Beanan, Robert J. Dodson, Lauren Brinkac, Michelle Gwinn, Robert T. DeBoy, Ramana Madpu, Sean C. Daugherty, A. Scott Durkin, Daniel H. Haft, William Nelson, Jeremy Peterson, Mihai Pop, Hoda Khouri, Diana Radune, Jonathan L. Benton, Yasmin Mahamoud, Lingxia Jiang, Ioana R. Hance, Janice F. Weidman, Kristi Berry, Roger D. Plaut, Alex M. Wolf, Kisha Watkins, William C. Nierman, Alyson Hazen, Robin T. Cline, Caroline Redmond, Joanne E. Thwaite, Owen White, Steven L. Salzberg, Brendan Thomason, Arthur M. Friedlander, Theresa M. Koehler, Philip C. Hanna, Anne-Brit Kolstø, Claire M. Fraser - Nature 2003 cited by 823
- Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
Authors: Natalie D. Fedorova, Nora Khaldi, Vinita Joardar, Rama Maiti, Paolo Amedeo, Michael J. Anderson, Jonathan Crabtree, Joana C. Silva, Jonathan H. Badger, Ahmed A. Albarraq, Samuel V. Angiuoli, Howard Bussey, Paul Bowyer, Peter J. Cotty, Paul S. Dyer, Amy Egan, Kevin Galens, Claire M. Fraser, Brian J. Haas, Jason Inman, Richard Kent, Sébastien Lemieux, Iran Malavazi, Joshua Orvis, Terry Roemer, Catherine M. Ronning, Jaideep P. Sundaram, Granger Sutton, Geoff Turner, J. Craig Venter, Owen White, Brett R. Whitty, Phil Youngman, Kenneth H. Wolfe, Gustavo H. Goldman, Jennifer R. Wortman, Bo Jiang, David W. Denning, William C. Nierman - PLoS Genetics 2008 cited by 531
- Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
Authors: M. A. Berg, Richard Albang, Kaj Albermann, Jonathan H. Badger, Jean‐Marc Daran, Arnold J. M. Driessen, Carlos García‐Estrada, Natalie D. Fedorova, Diana M. Harris, Wilbert H. M. Heijne, Vinita Joardar, Jan A.K.W. Kiel, Andriy Kovalchuk, Juan F. Martı́n, William C. Nierman, Jeroen G. Nijland, Jack T. Pronk, Johannes A. Roubos, Ida J. van der Klei, Noël N. M. E. van Peij, Marten Veenhuis, Hans von Döhren, Christian Wagner, Jennifer R. Wortman, Roel A. L. Bovenberg - Nature Biotechnology 2008 cited by 473
- Quorum-Sensing Control of Antibiotic Synthesis in Burkholderia thailandensis
Authors: Breck A. Duerkop, John Varga, Josephine R. Chandler, S. Brook Peterson, Jake P. Herman, Mair E. A. Churchill, Matthew R. Parsek, William C. Nierman, E. Peter Greenberg - Journal of Bacteriology 2009 cited by 140
- Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
Authors: Liliana Losada, Catherine M. Ronning, David DeShazer, Donald E. Woods, Natalie D. Fedorova, Sun Kim, Svetlana A. Shabalina, Talima Pearson, Lauren Brinkac, Patrick Tan, Tannistha Nandi, Jonathan Crabtree, Jonathan H. Badger, Steve M. Beckstrom-Sternberg, Muhammad Saqib, Steven E. Schutzer, Paul Keim, William C. Nierman - Genome Biology and Evolution 2010 cited by 120
- Secondary metabolite arsenal of an opportunistic pathogenic fungus
Authors: Elaine Bignell, Timothy C. Cairns, Kurt Throckmorton, William C. Nierman, Nancy P. Keller - Philosophical Transactions of the Royal Society B Biological Sciences 2016 cited by 108
- Type VI secretion is a major virulence determinant in Burkholderia mallei
Authors: Mark A. Schell, Ricky L. Ulrich, Wilson J. Ribot, Ernst E. Brueggemann, Harry B. Hines, Dan Chen, Lyla Lipscomb, Sun Kim, Jan Mrázek, William C. Nierman, David DeShazer - Molecular Microbiology 2007 cited by 318
- Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage
Authors: Eric S. Miller, John F. Heidelberg, Jonathan A. Eisen, William Nelson, A. Scott Durkin, Ann Ciecko, Tamara V. Feldblyum, Owen White, Ian T. Paulsen, William C. Nierman, Lee Jong, Bridget Szczypinski, Claire M. Fraser - Journal of Bacteriology 2003 cited by 234
