Jonathan Crabtree

Active 1993–2024

69
Papers
33,670
Citations
45
h-index
63
i10-index

Citations

Citations per year for Jonathan Crabtree1964: 1 citations1979: 1 citations1980: 1 citations1987: 2 citations1991: 2 citations1993: 3 citations1994: 4 citations1995: 8 citations1996: 8 citations1997: 12 citations1998: 6 citations1999: 10 citations2000: 6 citations2001: 17 citations2002: 25 citations2003: 61 citations2004: 54 citations2005: 85 citations2006: 132 citations2007: 162 citations2008: 223 citations2009: 238 citations2010: 242 citations2011: 303 citations2012: 274 citations2013: 276 citations2014: 326 citations2015: 263 citations2016: 289 citations2017: 244 citations2018: 265 citations2019: 734 citations2020: 694 citations2021: 746 citations2022: 552 citations2023: 406 citations2024: 565 citations2025: 284 citations2026: 22 citations1965–1978: no citations, so these years are not shown1981–1986: no citations, so these years are not shown1988–1990: no citations, so these years are not shown1992: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,426 citing papers, 26.9% of this breakdownUnited Kingdom: 950 citing papers, 7.4% of this breakdownChina: 941 citing papers, 7.4% of this breakdownGermany: 686 citing papers, 5.4% of this breakdownFrance: 573 citing papers, 4.5% of this breakdownCanada: 422 citing papers, 3.3% of this breakdownAustralia: 395 citing papers, 3.1% of this breakdownItaly: 350 citing papers, 2.7% of this breakdownSpain: 339 citing papers, 2.7% of this breakdownNetherlands: 310 citing papers, 2.4% of this breakdownBrazil: 305 citing papers, 2.4% of this breakdownSwitzerland: 267 citing papers, 2.1% of this breakdown
0%26.9%Other 29.7%

Fields

  • Biochemistry, Genetics and Molecular Biology46%
  • Medicine24.1%
  • Agricultural and Biological Sciences9%
  • Immunology and Microbiology6.2%
  • Environmental Science3.9%
  • Computer Science3.3%
  • Other7.5%

Topics

  • Gut microbiota and health9.4%
  • Genomics and Phylogenetic Studies6.1%
  • Probiotics and Fermented Foods2.2%
  • Clostridium difficile and Clostridium perfringens research2.1%
  • Microbial Community Ecology and Physiology1.9%
  • Trypanosoma species research and implications1.8%
  • Other76.5%

Coauthors

All papers

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  1. Strains, functions and dynamics in the expanded Human Microbiome Project

    Authors: , , , , , , , , , , , , , , - Nature 2017 cited by 1,387

  2. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae : Implications for the microbial “pan-genome”

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. B. O'Connor, Shannon D. Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, Claire M. Fraser - National Academy of Sciences, Proceedings of the National Academy of Sciences 2005 cited by 2,698

  3. A framework for human microbiome research

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Olukemi O. Abolude, Michelle Giglio, Heather H. Creasy, Catherine Jordan, Joshua Orvis, Noam J. Davidovics, J. Fah Sathirapongsasuti, Curtis Huttenhower, Nicola Segata, Theresa A. Hepburn, Georgia Giannoukos, Chad Nusbaum, Diana Tabbaa, Sharvari Gujja, Jonathan M. Goldberg, Eric J. Alm, Ashlee M. Earl, Brian J. Haas, Sarah Young, Michael Feldgarden, Narmada Shenoy, Dirk Gevers, Jennifer R. Wortman, M.A. Pearson, Zhengyuan Wang, Chandri Yandava, Margaret Priest, Jeremy Zucker, Curtis Huttenhower, Scott Anderson, Sheila Fisher, Katherine Huang, Doyle V. Ward, Dennis C. Friedrich, Clinton Howarth, Cristyn Kells, Bruce W. Birren, Qiandong Zeng, Carsten Russ, Toby Bloom, Lucia Alvarado, Allison Griggs, Michael G. FitzGerald, Dawn Ciulla, Teena Mehta, Harindra Arachchi, Rachel Erlich, Sean M. Sykes, Yiming Zhu, Richard A. Gibbs, Vandita Joshi, Sarah K. Highlander, Lan Zhang, Huaiyang Jiang, Yue Liu, Katarzyna Wilczek-Boney, Irene Newsham, Kim C. Worley, Lora Lewis, Michael Holder, Niall J. Lennon, Shannon Dugan, Jeffrey G. Reid, Yan Ding, Donna M. Muzny, Yuan Qing Wu, Xiang Qin, Christian Buhay, Sandra L. Lee, Christie Kovar and 148 more - Nature 2012 cited by 2,775

  4. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Mike Hawrylycz, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia Osteen, Thanh Pham, António Pinto‐Duarte, Olivier Poirion, Sebastian Preißl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline Rivkin, Kimberly A. Smith, Kelly Street, Josef Šulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles Vanderburg, Cindy T. J. van Velthoven, Xinxin Wang, Owen White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel - Nature 2021 cited by 382

  5. The TRUST Principles for digital repositories

    Authors: , , , , , , , , , , , , , , , , , , - Scientific Data 2020 cited by 390

  6. Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

    Authors: , , , , , , , , , , , , - Nature Biotechnology 2017 cited by 570

  7. A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina

    Authors: , , , , , , - Nature Communications 2020 cited by 195

  8. A Catalog of Reference Genomes from the Human Microbiome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Donna M. Muzny, M.A. Pearson, Kymberlie Pepin, Amrita Pati, Xiang Qin, Chandri Yandava, Qiandong Zeng, Lan Zhang, Aaron M. Berlin, Lei Chen, Theresa A. Hepburn, Justin Johnson, Jamison McCorrison, Jason Miller, Pat Minx, Chad Nusbaum, Carsten Russ, Sean M. Sykes, Chad Tomlinson, Sarah Young, Wesley C. Warren, Jonathan H. Badger, Jonathan Crabtree, Victor Markowitz, Joshua Orvis, Andrew Cree, Steve Ferriera, Lucinda Fulton, Robert S. Fulton, Marcus Gillis, Lisa Hemphill, Vandita Joshi, Christie Kovar, Manolito Torralba, Kris A. Wetterstrand, Amr Abouellleil, Aye Wollam, Christian Buhay, Yan Ding, Shannon Dugan, Michael G. FitzGerald, Mike Holder, Jessica B. Hostetler, Sandra W. Clifton, Emma Allen‐Vercoe, Ashlee M. Earl, Candace N. Farmer, Konstantinos Liolios, Michael G. Surette, Qiang Xu, Craig Pohl, Katarzyna Wilczek-Boney, Dianhui Zhu - Science 2010 cited by 720

  9. The Pangenome Structure ofEscherichia coli: Comparative Genomic Analysis ofE. coliCommensal and Pathogenic Isolates

    Authors: , , , , , , , , , , , , - Journal of Bacteriology 2008 cited by 874

  10. The Genome Sequence of Trypanosoma cruzi , Etiologic Agent of Chagas Disease

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Paul T. Englund, Gholam Fazelina, Tamara V. Feldblyum, Marcela Ferella, Alberto C.C. Frasch, Keith Gull, David Horn, Lihua Hou, Yiting Huang, Ellen Kindlund, Michele M. Klingbeil, Sindy Kluge, Hyunwoo Koo, Daniela R. Lacerda, Mariano J. Levin, Hernán Lorenzi, Tin Louie, Carlos Renato Machado, Richard McCulloch, Alan Mckenna, Yumi Mizuno, Jeremy C. Mottram, Siri Nelson, Stephen Ochaya, Kazutoyo Osoegawa, Grace Pai, Marilyn Parsons, Martin Pentony, Ulf Pettersson, Mihai Pop, José Luis Ramı́rez, Joel Rinta, Laura Robertson, Steven L. Salzberg, Daniel O. Sánchez, Amber Seyler, Reuben Sunil Kumar Sharma, Jyoti Shetty, Anjana J. Simpson, Ellen Sisk, Martti T. Tammi, Rick L. Tarleton, Santuza Maria Ribeiro Teixeira, Susan Van Aken, Christy Vogt, Pauline N. Ward, Bill Wickstead, Jennifer R. Wortman, Owen White, Claire M. Fraser, Kenneth Stuart, Björn Andersson - Science 2005 cited by 1,409

  11. Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

    Authors: , , , , , , , , , , , , - mBio 2015 cited by 160

  12. Complex genetic variation in nearly complete human genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Kendra Hoekzema, Sarah Hunt, Matthew Jensen, Yunzhe Jiang, Sergey Koren, Young-Jun Kwon, Chong Li, Heng Li, Jiaqi Li, Paul J. Norman, Keisuke K. Oshima, Benedict Paten, Adam M. Phillippy, Nicholas R. Pollock, Tobias Rausch, Mikko Rautiainen, Stephan Scholz, Yuwei Song, Arda Söylev, Arvis Sulovari, Likhitha Surapaneni, Vasiliki Tsapalou, Weichen Zhou, Ying Zhou, Qihui Zhu, Michael C. Zody, Ryan E. Mills, Scott E. Devine, Xinghua Shi, Mike E Talkowski, Mark Chaisson, Alexander Dilthey, Miriam K. Konkel, Jan O. Korbel, Charles Lee, Christine R. Beck, Evan E. Eichler, Tobias Marschall - Nature 2024 cited by 79

  13. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 70

  14. Structure, function and diversity of the healthy human microbiome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Gary L. Andersen, Scott Anderson, Elizabeth L. Appelbaum, Harindra Arachchi, Gary C. Armitage, Cesar Arze, Tulin Ayvaz, Carl C. Baker, Lisa Begg, Tsegahiwot Belachew, Veena Bhonagiri, Monika Bihan, Martin J. Blaser, Toby Bloom, Vivien Bonazzi, J. Paul Brooks, Gregory A. Buck, Christian Buhay, Dana Busam, Joseph L. Campbell, Shane R. Canon, Brandi L. Cantarel, Patrick Chain, I-Min A. Chen, Lei Chen, Shaila Chhibba, Ken Chu, Dawn Ciulla, José C. Clemente, Sandra W. Clifton, Sean Conlan, Jonathan Crabtree, Mary A. Cutting, Noam J. Davidovics, Catherine Davis, Todd Z. DeSantis, Carolyn Deal, Kimberley D. Delehaunty, Floyd E. Dewhirst, Elena Deych, Yan Ding, David J. Dooling, Shannon Dugan, W. Michael Dunne, A. Scott Durkin, R. C. Edgar, Rachel Erlich, Candace N. Farmer, Ruth M. Farrell, Karoline Faust, Michael Feldgarden, Victor Felix, Sheila Fisher, Anthony A. Fodor, Larry J. Forney, Leslie Foster, Valentina Di Francesco, Jonathan Friedman, Dennis C. Friedrich, Catrina C. Fronick, Lucinda Fulton, Hongyu Gao, M. Nathalia Garcia, Georgia Giannoukos, Christina Giblin, Maria Y. Giovanni, Jonathan M. Goldberg, Johannes B. Goll, Antonio González, Allison Griggs and 148 more - Nature 2012 cited by 12,107

  15. Genome Sequence of Aedes aegypti , a Major Arbovirus Vector

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Becky deBruyn, David DeCaprio, Karin Eiglmeier, Eric Eisenstadt, Hamza A. El-Dorry, William M Gelbart, Suely Lopes Gomes, M. Hammond, Linda I. Hannick, James R. Hogan, Michael H. Holmes, David B. Jaffe, J. Spencer Johnston, Ryan Kennedy, Hyunwoo Koo, Saul Kravitz, Evgenia V. Kriventseva, David Kulp, Kurt LaButti, Eduardo Lee, Li Song, Diane D. Lovin, Chunhong Mao, Evan Mauceli, Carlos Frederico Martins Menck, Jason Miller, Philip Montgomery, Akio Mori, Ana L. T. O. Nascimento, Horacio Naveira, Chad Nusbaum, Sinéad B. O'Leary, Joshua Orvis, Mihaela Pertea, Hadi Quesneville, Kyanne R. Reidenbach, Yu-Hui Rogers, Charles W. Roth, Jennifer R. Schneider, Michael C. Schatz, Martin Shumway, Mario Stanke, E. O. Stinson, José M. C. Tubío, Janice P. VanZee, Sergio Verjovski‐Almeida, Doreen Werner, Owen White, Stefan Wyder, Qiandong Zeng, Qi Zhao, Yongmei Zhao, Catherine A. Hill, Alexander S. Raikhel, Marcelo B. Soares, D. L. Knudson, Norman H. Lee, James E. Galagan, Steven L. Salzberg, Ian T. Paulsen, George Dimopoulos, Frank H. Collins, Bruce Birren, Claire M. Fraser, David W. Severson - Science 2007 cited by 1,123

  16. Comparative Genomics of Trypanosomatid Parasitic Protozoa

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Sarah Kummerfeld, José B. Pereira‐Leal, Daniel Nilsson, Jeremy Peterson, Steven L. Salzberg, Joshua M. Shallom, Joana C. Silva, Jaideep P. Sundaram, Scott J Westenberger, Owen White, Sara E. Melville, John E. Donelson, Björn Andersson, Kenneth Stuart, Neil Hall - Science 2005 cited by 839

  17. Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy

    Authors: , , , , , , , , , , , , - The Plant Cell 2006 cited by 434

  18. Draft genome sequence of the oilseed species Ricinus communis

    Authors: , , , , , , , , , , , , , , , , , - Nature Biotechnology 2010 cited by 550

  19. Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data

    Authors: , , , , - Microbiome 2017 cited by 89

  20. Comparative genomics of the neglected human malaria parasite Plasmodium vivax

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Steven L. Salzberg, Christian J. Stoeckert, Steven A. Sullivan, Márcio Yamamoto, Stephen L. Hoffman, Jennifer R. Wortman, Malcolm J. Gardner, Mary R. Galinski, John W. Barnwell, Claire M. Fraser - Nature 2008 cited by 865

  21. Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Owen White, Brett R. Whitty, Phil Youngman, Kenneth H. Wolfe, Gustavo H. Goldman, Jennifer R. Wortman, Bo Jiang, David W. Denning, William C. Nierman - PLoS Genetics 2008 cited by 531

  22. An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

    Authors: , , , , , , , , , , , , , , , , , , - Nature Communications 2016 cited by 137

  23. Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements

    Authors: , , , , , , , , , , , , , , , , , - Genome Biology and Evolution 2010 cited by 120

  24. HMPDACC: a Human Microbiome Project Multi-omic data resource

    Authors: , , , , , , , , , , , , - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 32