litlas
Log inCreate account

Michael Feldgarden

Active 2010–2025

30
Papers
22,566
Citations
26
h-index
29
i10-index

Citations

Citations per year for Michael Feldgarden1979: 1 citations1995: 1 citations1999: 1 citations2000: 1 citations2004: 1 citations2005: 1 citations2007: 1 citations2009: 2 citations2010: 18 citations2011: 63 citations2012: 124 citations2013: 152 citations2014: 163 citations2015: 167 citations2016: 154 citations2017: 153 citations2018: 118 citations2019: 330 citations2020: 369 citations2021: 393 citations2022: 341 citations2023: 319 citations2024: 635 citations2025: 338 citations2026: 37 citations1980–1994: no citations, so these years are not shown1996–1998: no citations, so these years are not shown2001–2003: no citations, so these years are not shown2006: no citations, so this year is not shown2008: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 1,578 citing papers, 24.9% of this breakdownChina: 536 citing papers, 8.5% of this breakdownUnited Kingdom: 475 citing papers, 7.5% of this breakdownGermany: 348 citing papers, 5.5% of this breakdownFrance: 254 citing papers, 4% of this breakdownCanada: 208 citing papers, 3.3% of this breakdownAustralia: 206 citing papers, 3.3% of this breakdownItaly: 163 citing papers, 2.6% of this breakdownSpain: 158 citing papers, 2.5% of this breakdownNetherlands: 148 citing papers, 2.3% of this breakdownDenmark: 137 citing papers, 2.2% of this breakdownSwitzerland: 129 citing papers, 2% of this breakdown
0%24.9%Other 31.4%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology60.2%
  • Medicine18%
  • Environmental Science6.7%
  • Agricultural and Biological Sciences6.6%
  • Immunology and Microbiology2.7%
  • Dentistry2.1%
  • Other3.7%

Topics

  • Gut microbiota and health11.5%
  • Antibiotic Resistance in Bacteria7.8%
  • Genomics and Phylogenetic Studies6.1%
  • Probiotics and Fermented Foods3%
  • Antimicrobial Resistance in Staphylococcus2.9%
  • Clostridium difficile and Clostridium perfringens research2.9%
  • Other65.8%

Coauthors

All papers

Open in search
  1. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

    Authors: Michael Feldgarden, Vyacheslav Brover, Narjol González‐Escalona, Jonathan G. Frye, Julie Haendiges, Daniel H. Haft, Maria Hoffmann, James Pettengill, Arjun Prasad, Glenn E. Tillman, Gregory H. Tyson, William Klimke - Scientific Reports 2021 cited by 1,542

  2. Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates

    Authors: Michael Feldgarden, Vyacheslav Brover, Daniel H. Haft, Arjun Prasad, Douglas J. Slotta, Igor Tolstoy, Gregory H. Tyson, Shaohua Zhao, Chih-Hao Hsu, Patrick F. McDermott, Daniel A. Tadesse, Cesar A. Morales, Mustafa Simmons, Glenn E. Tillman, Jamie Wasilenko, Jason P. Folster, William Klimke - Antimicrobial Agents and Chemotherapy 2019 cited by 1,453

  3. A framework for human microbiome research

    Authors: Ravi Sanka, Johannes B. Goll, Jason Miller, Leslie Foster, Dana A. Busam, A. Scott Durkin, Jamison McCorrison, Manolito Torralba, Indresh Singh, Jamison M. McCorrison, Ramana Madupu, Dana Busam, Barbara A. Methé, Kelvin Li, Monika Bihan, Granger G. Sutton, Mathangi Thiagarajan, Bo Liu, Sergey Koren, Mihai Pop, Sergey Koren, Jonathan Crabtree, Cesar Arze, Lynn M. Schriml, Anup Mahurkar, Brandi L. Cantarel, Owen White, Victor Felix, James R. White, Jacques Ravel, Olukemi O. Abolude, Michelle Giglio, Heather H. Creasy, Catherine Jordan, Joshua Orvis, Noam J. Davidovics, J. Fah Sathirapongsasuti, Curtis Huttenhower, Nicola Segata, Theresa A. Hepburn, Georgia Giannoukos, Chad Nusbaum, Diana Tabbaa, Sharvari Gujja, Jonathan M. Goldberg, Eric J. Alm, Ashlee M. Earl, Brian J. Haas, Sarah Young, Michael Feldgarden, Narmada Shenoy, Dirk Gevers, Jennifer R. Wortman, M.A. Pearson, Zhengyuan Wang, Chandri Yandava, Margaret Priest, Jeremy Zucker, Curtis Huttenhower, Scott Anderson, Sheila Fisher, Katherine Huang, Doyle V. Ward, Dennis C. Friedrich, Clinton Howarth, Cristyn Kells, Bruce W. Birren, Qiandong Zeng, Carsten Russ, Toby Bloom, Lucia Alvarado, Allison Griggs, Michael G. FitzGerald, Dawn Ciulla, Teena Mehta, Harindra Arachchi, Rachel Erlich, Sean M. Sykes, Yiming Zhu, Richard A. Gibbs, Vandita Joshi, Sarah K. Highlander, Lan Zhang, Huaiyang Jiang, Yue Liu, Katarzyna Wilczek-Boney, Irene Newsham, Kim C. Worley, Lora Lewis, Michael Holder, Niall J. Lennon, Shannon Dugan, Jeffrey G. Reid, Yan Ding, Donna M. Muzny, Yuan Qing Wu, Xiang Qin, Christian Buhay, Sandra L. Lee, Christie Kovar and 148 more - Nature 2012 cited by 2,775

  4. Database resources of the National Center for Biotechnology Information in 2023

    Authors: Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Catherine M. Farrell, Michael Feldgarden, Anna M. Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Adriana J. Malheiro, Aron Marchler-Bauer, Terence D. Murphy, Lon Phan, Shashikant Pujar, Sanjida H. Rangwala, Valerie A. Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 468

  5. Database resources of the National Center for Biotechnology Information

    Authors: Eric W Sayers, Jeffrey Beck, Evan Bolton, J. Rodney Brister, Jessica Chan, Donald C. Comeau, Ryan Connor, Michael DiCuccio, Catherine M. Farrell, Michael Feldgarden, Anna M Fine, Kathryn Funk, Eneida Hatcher, Marilu Hoeppner, Megan Kane, Sivakumar Kannan, Kenneth Katz, Christopher E. Kelly, William Klimke, Sunghwan Kim, Avi Kimchi, Melissa Landrum, Stacy Lathrop, Zhiyong Lu, Adriana Malheiro, Aron Marchler‐Bauer, Terence D. Murphy, Lon Phan, Arjun Prasad, Shashikant Pujar, Amanda Sawyer, Erin Schmieder, Valérie Schneider, Conrad L. Schoch, Shobha Sharma, Françoise Thibaud‐Nissen, Barton W Trawick, Thilakam Venkatapathi, Jiyao Wang, Kim D. Pruitt, Stephen T. Sherry - Nucleic Acids Research 2023 cited by 355

  6. Database resources of the National Center for Biotechnology Information in 2025

    Authors: Eric W Sayers, Jeffrey Beck, Evan Bolton, J. Rodney Brister, Jessica Chan, Ryan Connor, Michael Feldgarden, Anna M Fine, Kathryn Funk, Jinna Hoffman, Sivakumar Kannan, Christopher E. Kelly, William Klimke, Sunghwan Kim, Stacy Lathrop, Aron Marchler‐Bauer, Terence D. Murphy, Chris O’Sullivan, Erin Schmieder, Yuriy Skripchenko, Adam Stine, Francoise Thibaud-Nissen, Jiyao Wang, Jian Ye, Erin Zellers, Valérie Schneider, Kim D. Pruitt - Nucleic Acids Research 2024 cited by 453

  7. A Catalog of Reference Genomes from the Human Microbiome

    Authors: Karen E. Nelson, George M. Weinstock, Sarah K. Highlander, Kim C. Worley, Heather H. Creasy, Jennifer R. Wortman, Douglas B. Rusch, Makedonka Mitreva, Erica Sodergren, Asif Chinwalla, Michael Feldgarden, Dirk Gevers, Brian J. Haas, Ramana Madupu, Doyle V. Ward, Bruce W. Birren, Richard A. Gibbs, Barbara A. Methé, Joseph F. Petrosino, Robert L. Strausberg, Granger Sutton, Owen White, Richard K. Wilson, Scott Durkin, Michelle Giglio, Sharvari Gujja, Clint Howarth, Chinnappa D. Kodira, Nikos C. Kyrpides, Teena Mehta, Donna M. Muzny, M.A. Pearson, Kymberlie Pepin, Amrita Pati, Xiang Qin, Chandri Yandava, Qiandong Zeng, Lan Zhang, Aaron M. Berlin, Lei Chen, Theresa A. Hepburn, Justin Johnson, Jamison McCorrison, Jason Miller, Pat Minx, Chad Nusbaum, Carsten Russ, Sean M. Sykes, Chad Tomlinson, Sarah Young, Wesley C. Warren, Jonathan H. Badger, Jonathan Crabtree, Victor Markowitz, Joshua Orvis, Andrew Cree, Steve Ferriera, Lucinda Fulton, Robert S. Fulton, Marcus Gillis, Lisa Hemphill, Vandita Joshi, Christie Kovar, Manolito Torralba, Kris A. Wetterstrand, Amr Abouellleil, Aye Wollam, Christian Buhay, Yan Ding, Shannon Dugan, Michael G. FitzGerald, Mike Holder, Jessica B. Hostetler, Sandra W. Clifton, Emma Allen‐Vercoe, Ashlee M. Earl, Candace N. Farmer, Konstantinos Liolios, Michael G. Surette, Qiang Xu, Craig Pohl, Katarzyna Wilczek-Boney, Dianhui Zhu - Science 2010 cited by 720

  8. Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E . gallinarum and E . casseliflavus

    Authors: Kelli L. Palmer, Paul A. Godfrey, Allison Griggs, Veronica N. Kos, Jeremy Zucker, Christopher A. Desjardins, Gustavo C. Cerqueira, Dirk Gevers, Suzanne Walker, Jennifer R. Wortman, Michael Feldgarden, Brian J. Haas, Bruce Birren, Michael S. Gilmore - mBio 2012 cited by 348

  9. A Standard Numbering Scheme for Class C β-Lactamases

    Authors: Andrew R Mack, Melissa D. Barnes, Magdalena A. Taracila, Andrea M. Hujer, Kristine M. Hujer, Gabriel Cabot, Michael Feldgarden, Daniel H. Haft, William Klimke, Focco van den Akker, Alejandro J. Vila, Andrea M. Smania, Shozeb Haider, Krisztina M. Papp‐Wallace, Patricia A. Bradford, Gian María Rossolini, Jean‐Denis Docquier, Jean‐Marie Frère, Moreno Galleni, Nancy D. Hanson, Antonio Oliver, Patrick Plésiat, Laurent Poirel, Patrice Nordmann, Timothy Palzkill, George A. Jacoby, Karen Bush, Robert A. Bonomo - Antimicrobial Agents and Chemotherapy 2019 cited by 85

  10. The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

    Authors: Marie Touchon, Jean Cury, Eun-Jeong Yoon, Lenka Křížová, Gustavo Cerqueira, Cheryl I. Murphy, Michael Feldgarden, Jennifer R. Wortman, Dominique Clermont, Thierry Lambert, Catherine Grillot‐Courvalin, Alexandr Nemec, Patrice Courvalin, Eduardo P. C. Rocha - Genome Biology and Evolution 2014 cited by 282

  11. Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

    Authors: Gustavo Cerqueira, Ashlee M. Earl, Christoph M. Ernst, Yonatan H. Grad, John P. Dekker, Michael Feldgarden, Sinéad B. Chapman, João Luís Reis-Cunha, Terrance Shea, Sarah Young, Qiandong Zeng, Mary L. Delaney, Diane Kim, Ellena M. Peterson, Thomas O’Brien, Mary Jane Ferraro, David C. Hooper, Susan S. Huang, James E. Kirby, Andrew B. Onderdonk, Susan J. Birren, Deborah T. Hung, Lisa A. Cosimi, Jennifer R. Wortman, Cheryl I. Murphy, William P. Hanage - National Academy of Sciences, Proceedings of the National Academy of Sciences 2017 cited by 170

  12. Curation of the AMRFinderPlus databases: applications, functionality and impact

    Authors: Michael Feldgarden, Vyacheslav Brover, Boris Fedorov, Daniel H. Haft, Arjun Prasad, William Klimke - Microbial Genomics 2022 cited by 58

  13. Structure, function and diversity of the healthy human microbiome

    Authors: Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger, Asif Chinwalla, Heather H. Creasy, Ashlee M. Earl, Michael G. FitzGerald, Robert S. Fulton, Michelle Giglio, Kymberlie Hallsworth-Pepin, Elizabeth A. Lobos, Ramana Madupu, Vincent Magrini, John C. Martin, Makedonka Mitreva, Donna M. Muzny, Erica Sodergren, James Versalovic, Aye Wollam, Kim C. Worley, Jennifer R. Wortman, Sarah Young, Qiandong Zeng, Kjersti M. Aagaard, Olukemi O. Abolude, Emma Allen‐Vercoe, Eric J. Alm, Lucia Alvarado, Gary L. Andersen, Scott Anderson, Elizabeth L. Appelbaum, Harindra Arachchi, Gary C. Armitage, Cesar Arze, Tulin Ayvaz, Carl C. Baker, Lisa Begg, Tsegahiwot Belachew, Veena Bhonagiri, Monika Bihan, Martin J. Blaser, Toby Bloom, Vivien Bonazzi, J. Paul Brooks, Gregory A. Buck, Christian Buhay, Dana Busam, Joseph L. Campbell, Shane R. Canon, Brandi L. Cantarel, Patrick Chain, I-Min A. Chen, Lei Chen, Shaila Chhibba, Ken Chu, Dawn Ciulla, José C. Clemente, Sandra W. Clifton, Sean Conlan, Jonathan Crabtree, Mary A. Cutting, Noam J. Davidovics, Catherine Davis, Todd Z. DeSantis, Carolyn Deal, Kimberley D. Delehaunty, Floyd E. Dewhirst, Elena Deych, Yan Ding, David J. Dooling, Shannon Dugan, W. Michael Dunne, A. Scott Durkin, R. C. Edgar, Rachel Erlich, Candace N. Farmer, Ruth M. Farrell, Karoline Faust, Michael Feldgarden, Victor Felix, Sheila Fisher, Anthony A. Fodor, Larry J. Forney, Leslie Foster, Valentina Di Francesco, Jonathan Friedman, Dennis C. Friedrich, Catrina C. Fronick, Lucinda Fulton, Hongyu Gao, M. Nathalia Garcia, Georgia Giannoukos, Christina Giblin, Maria Y. Giovanni, Jonathan M. Goldberg, Johannes B. Goll, Antonio González, Allison Griggs and 148 more - Nature 2012 cited by 12,107

  14. Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere

    Authors: Lavanya Challagundla, Jinnethe Reyes, Iftekhar Rafiqullah, Daniel O. Sordelli, Gabriela Echániz-Avilés, María Elena Velázquez-Meza, Santiago Castillo‐Ramírez, Nahuel Fittipaldi, Michael Feldgarden, Sinéad B. Chapman, Michael S. Calderwood, Lina P Carvajal, Sandra Rincón, Blake Hanson, Paul J. Planet, César A. Arias, Lorena Díaz, D. Ashley Robinson - Frontiers in Microbiology 2018 cited by 113

  15. Identification and Characterization of ten Escherichia coli Strains Encoding Novel Shiga Toxin 2 Subtypes, Stx2n as Well as Stx2j, Stx2m, and Stx2o, in the United States

    Authors: Rebecca L. Lindsey, Arjun Prasad, Michael Feldgarden, Narjol González‐Escalona, Curtis J. Kapsak, William Klimke, Angela R. Melton‐Celsa, P. B. Smith, Alexandre Souvorov, Jenny Truong, Flemming Scheutz - Microorganisms 2023 cited by 28

  16. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

    Authors: Chengwei Luo, Seth T. Walk, David M. Gordon, Michael Feldgarden, James M. Tiedje, Konstantinos T. Konstantinidis - National Academy of Sciences, Proceedings of the National Academy of Sciences 2011 cited by 325

  17. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus

    Authors: Paul R. McAdam, Kate Templeton, Giles Edwards, Matthew T. G. Holden, Edward J. Feil, David M. Aanensen, Hiba J. A. Bargawi, Brian G. Spratt, Stephen D. Bentley, Julian Parkhill, Mark C. Enright, Anne Holmes, E. K. Girvan, Paul A. Godfrey, Michael Feldgarden, Angela Kearns, Andrew Rambaut, D. Ashley Robinson, J. Ross Fitzgerald - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 194

  18. Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes

    Authors: Sally R. Partridge, Vincenzo Di Pilato, Yohei Doi, Michael Feldgarden, Daniel H. Haft, William Klimke, Samir Kumar‐Singh, Jian–Hua Liu, Surbhi Malhotra‐Kumar, Arjun Prasad, Gian María Rossolini, Štefan Schwarz, Jianzhong Shen, Timothy R. Walsh, Yang Wang, Basil Britto Xavier - Journal of Antimicrobial Chemotherapy 2018 cited by 116

  19. Consensus on β-Lactamase Nomenclature

    Authors: Patricia A. Bradford, Robert A. Bonomo, Karen Bush, Alessandra Carattoli, Michael Feldgarden, Daniel H. Haft, Yoshikazu Ishii, George A. Jacoby, William Klimke, Timothy Palzkill, Laurent Poirel, Gian María Rossolini, Pranita D. Tamma, César A. Arias - Antimicrobial Agents and Chemotherapy 2022 cited by 32

  20. hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling

    Authors: Catarina Inês Mendes, Emma Griffiths, Alex Manuele, Daniel Fornika, Simon H. Tausch, Thanh Le-Viet, Jody Phelan, Conor J. Meehan, Amogelang R. Raphenya, Brian Alcock, Elizabeth Culp, Federico Lorenzo, María Sol Haim, Adam A. Witney, Allison Black, Lee S. Katz, Paul E. Oluniyi, Idowu B. Olawoye, Ruth Timme, Hui‐min Neoh, Su Datt Lam, Tengku Zetty Maztura Tengku Jamaluddin, Sheila Nathan, Mia Yang Ang, Sabrina Di Gregorio, Koen Vandelannoote, Rutaiwan Dusadeepong, Leonid Chindelevitch, Muhammad Ibtisam Nasar, David M. Aanensen, Ayorinde O. Afolayan, Erkison Ewomazino Odih, Andrew G. McArthur, Michael Feldgarden, Marcelo M Galas, Josefina Campos, Iruka N. Okeke, Anthony Underwood, Andrew J. Page, Duncan MacCannell, Finlay Maguire - 2024 cited by 21

  21. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

    Authors: Yonatan H. Grad, Marc Lipsitch, Michael Feldgarden, Harindra Arachchi, Gustavo Cerqueira, Michael G. FitzGerald, Paul A. Godfrey, Brian J. Haas, Cheryl I. Murphy, Carsten Russ, Sean M. Sykes, Bruce J. Walker, Jennifer R. Wortman, Sarah Young, Qiandong Zeng, Amr Abouelleil, James Bochicchio, Sara Chauvin, Timothy DeSmet, Sharvari Gujja, Caryn McCowan, Anna Montmayeur, Scott Steelman, Jakob Frimodt-Møller, Andreas Munk Petersen, Carsten Struve, Karen A. Krogfelt, Édouard Bingen, François‐Xavier Weill, Eric S. Lander, Chad Nusbaum, Susan J. Birren, Deborah T. Hung, William P. Hanage - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 277

  22. Comparative Genomics of Vancomycin-Resistant Staphylococcus aureus Strains and Their Positions within the Clade Most Commonly Associated with Methicillin-Resistant S. aureus Hospital-Acquired Infection in the United States

    Authors: Veronica N. Kos, Christopher A. Desjardins, Allison Griggs, Gustavo Cerqueira, Andries J. van Tonder, Matthew T. G. Holden, Paul A. Godfrey, Kelli L. Palmer, K. Bodi, Emmanuel F. Mongodin, Jennifer R. Wortman, Michael Feldgarden, Trevor D. Lawley, Steven R. Gill, Brian J. Haas, Bruce Birren, Michael S. Gilmore - mBio 2012 cited by 147

  23. Using the NCBI AMRFinder Tool to Determine Antimicrobial Resistance Genotype-Phenotype Correlations Within a Collection of NARMS Isolates

    Authors: Michael Feldgarden, Vyacheslav Brover, Daniel H. Haft, Arjun Prasad, Douglas J. Slotta, Igor Tolstoy, Gregory H. Tyson, Shaohua Zhao, Chih-Hao Hsu, Patrick F. McDermott, Daniel A. Tadesse, Cesar A. Morales, Mustafa Simmons, Glenn E. Tillman, Jamie Wasilenko, Jason P. Folster, William Klimke - 2019 cited by 77

  24. β-Lactamase diversity in Acinetobacter baumannii

    Authors: Andrew R Mack, Andrea M. Hujer, María F. Mojica, Magdalena A. Taracila, Michael Feldgarden, Daniel H. Haft, William Klimke, Arjun Prasad, Robert A. Bonomo - Antimicrobial Agents and Chemotherapy 2025 cited by 22