Siqi Liu
Active 2002–2026
- 564
- Papers
- 38,375
- Citations
- 84
- h-index
- 357
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology31.2%
- Medicine17.2%
- Computer Science16.1%
- Immunology and Microbiology9.1%
- Agricultural and Biological Sciences7.3%
- Engineering4.7%
- Other14.4%
Topics
- interferon and immune responses3%
- Genetic Associations and Epidemiology1.8%
- Genomics and Phylogenetic Studies1.7%
- Genetic Mapping and Diversity in Plants and Animals1.6%
- AI in cancer detection1.6%
- Inflammasome and immune disorders1.5%
- Other88.8%
Coauthors
- Weidong Cai26
- Lei Zhou17
- Yang Song17
- Yixing Li16
- Luke Marris15
- Nicolas Heess15
- Sidong Liu15
- Dagan Feng14
- Donghao Zhang14
- Zuqing Zhu13
- Sasa Grbic12
- Dorin Comaniciu11
- Hanchuan Peng11
- Lin Yu11
- Mengling Feng11
- Ron Kikinis11
- Sonia Pujol11
- Yi‐Jun Xu11
- Pong C. Yuen10
- Ian Gemp9
- Lixia Zhang9
- Adam Casson8
- Alexandre Manhães-Savio8
- Blake E. Dewey8
All papers
- Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation
Authors: Siqi Liu, Xin Cai, Jiaxi Wu, Qian Cong, Xiang Chen, Tuo Li, Fenghe Du, Junyao Ren, Youtong Wu, Nick V. Grishin, Zhijian J. Chen - Science 2015 cited by 1,945
- A foundation model for clinical-grade computational pathology and rare cancers detection
Authors: Eugene Vorontsov, Alican Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Kristen Severson, Eric Zimmermann, James M. Hall, Neil Tenenholtz, Nicolò Fusi, Ellen Yang, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, E.BETZ ROBERT, Yi Kan Wang, Jeremy D. Kunz, Matthew C. H. Lee, Jan Bernhard, Ran Godrich, Gerard J. Oakley, Ewan K.A. Millar, Matthew G. Hanna, Hannah Y. Wen, Juan Antonio Retámero, William A. Moye, Razik Yousfi, Christopher Kanan, David S. Klimstra, Brandon Rothrock, Siqi Liu, Thomas J. Fuchs - Nature Medicine 2024 cited by 390
- Step-Video-T2V Technical Report: The Practice, Challenges, and Future of Video Foundation Model
Authors: Guoqing Ma, Haoyang Huang, Kun Yan, Liangyu Chen, Nan Duan, Shengming Yin, Changyi Wan, Ming, Ranchen, Xiaoniu Song, Xing Chen, Yu Zhou, Deshan Sun, Deyu Zhou, Jian Zhou, Kaijun Tan, Kang An, Mei Chen, Wei Ji, Qiling Wu, Wen Sun, Xin Han, Yanan Wei, Zheng Ge, A. F. Li, Bin Wang, Huang, Bizhu, Bo Wang, Brian Y. Li, Changxing Miao, Chen Xu, Chenfei Wu, Chenguang Yu, Dapeng Shi, Dingyuan Hu, Liu, Enle, Yu, Gang, Ge Yang, Guangnan Huang, Yan, Gulin, Haiyang Feng, Hao Nie, Haonan Jia, Hanpeng Hu, Hanqi Chen, Haolong Yan, Heng Wang, Hongcheng Guo, Huilin Xiong, Huixin Xiong, Jiahao Gong, Jianchang Wu, Jiao-Ren Wu, Jie Wu, Jie Yang, Jiashuai Liu, Jiashuo Li, Jingyang Zhang, Jiajie Guo, Junzhe Lin, Kaixiang Li, Lei Liu, Lei Xia, Liang Zhao, Liguo Tan, Liwen Huang, Liying Shi, Ming Li, Mingliang Li, Mu‐hua Cheng, Na Wang, Qiaohui Chen, Qinglin He, Qiuyan Liang, Quan Sun, Ran Sun, Rui Wang, Shaoliang Pang, Shiliang Yang, Sitong Liu, Siqi Liu, Shuli Gao, Tiancheng Cao, Tianyu Wang, Weipeng Ming, Wenqing He, Xu Zhao, Xuelin Zhang, Xianfang Zeng, Xiaojia Liu, Xuan Yang, Dai, Yaqi, Yanbo Yu, Yang Li, Deng, Yineng, Ying-Ming Wang, Yilei Wang, Yuanwei Lu, Yu Chen, Yu Luo, Yi Luo and 15 more - ArXiv.org, CoRR 2025 cited by 152
- Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathology
Authors: Eric Zimmermann, Eugene Vorontsov, Julian Viret, Adam Casson, Michal Zelechowski, George Shaikovski, Neil A. Tenenholtz, James Brian Hall, David S. Klimstra, Razik Yousfi, Thomas J. Fuchs, Nicoló Fusi, Siqi Liu, Kristen Severson - arXiv (Cornell University), CoRR 2024 cited by 133
- metaX: a flexible and comprehensive software for processing metabolomics data
Authors: Bo Wen, Zhanlong Mei, Chunwei Zeng, Siqi Liu - BMC Bioinformatics, BMC Bioinform. 2017 cited by 1,011
- Step-Audio 2 Technical Report
Authors: Boyong Wu, Chao Yan, Hu Chen, Yi Cheng, Chengli Feng, Fei Tian, Fei Shen, Gang Yu, Haoyang Zhang, Jingbei Li, Mingrui Chen, Pengpeng Liu, You Wang, Xiangyu Zhang, X. Rong Li, Yang, Xuerui, Yayue Deng, Huang, Yechang, Yingjun Li, Zhang, Yuxin, You Zhao, Bingxue Li, Changyi Wan, Hanpeng Hu, Jiangjie Zhen, Si Yu Chen, Song Yuan, Xuelin Zhang, Yimin Jiang, Zhou Yu, Yuxiang Yang, Bingxin Li, Buyun Ma, Song, Changhe, Dongqing Pang, Guoqiang Hu, Haiyang Sun, An Kang, Na Wang, Shuli Gao, Weiwei Ji, Wen Li, Wenguang Sun, Wen, Xuan, Yong Ren, Yuankai Ma, Yufan Lu, Bin Wang, Bo Li, Changxin Miao, Liu, Che, Xu Chen, Dapeng Shi, Dingyuan Hu, Donghang Wu, Liu, Enle, Guangnan Huang, Yan, Gulin, Han Zhang, Hao Nie, Haonan Jia, Zhou, Hongyu, Jianjian Sun, Jiao-Ren Wu, Jieyun Wu, Jie Yang, Jin Yang, Junzhe Lin, Kaixiang Li, Yang Lei, Liying Shi, Zhou, Li, L. M. Gu, Min Li, Mingliang Li, Mingxiao Li, Nan Wu, Qi Han, Qi Tan, Shaoliang Pang, Shengjie Fan, Siqi Liu, Tiancheng Cao, Wanying Lu, Wenqing He, Xie, Wuxun, Zhao Xu, Xueqi Li, Yanbo Yu, Yang Yang, Yi Liu, Y. P. Lu, Yilei Wang, Y. Ding, Yuanwei Liang, Yuanwei Lu, Yi Luo, Yuhe Yin, Zhan, Yumeng, Yuxiang Zhang and 9 more - ArXiv.org, CoRR 2025 cited by 115
- Virchow: A Million-Slide Digital Pathology Foundation Model
Authors: Eugene Vorontsov, Alican Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Siqi Liu, Severson, Kristen, Zimmermann, Eric, Hall, James, Tenenholtz, Neil, Fusi, Nicolo, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, Eric Robert, Yi Kan Wang, Kunz, Jeremy D., Lee, Matthew C. H., Jan Bernhard, Ran Godrich, Gerard J. Oakley, Ewan K.A. Millar, Matthew G. Hanna, Juan Antonio Retámero, William A. Moye, Razik Yousfi, Christopher Kanan, David S. Klimstra, Brandon Rothrock, Thomas J. Fuchs - arXiv (Cornell University), CoRR 2023 cited by 112
- Step-Audio: Unified Understanding and Generation in Intelligent Speech Interaction
Authors: Ailin Huang, Boyong Wu, Bruce Wang, Chao Yan, Chen Hu, Chengli Feng, Fei‐Yang Tian, Feiyu Shen, Jingbei Li, Mingrui Chen, Peng Liu, R M Miao, You Wang, Xi Chen, Xuerui Yang, Huang, Yechang, Yuxiang Zhang, Zheng Gong, Zixin Zhang, Hongyu Zhou, Jianjian Sun, Brian Li, Chengting Feng, Changyi Wan, Hanpeng Hu, Jianchang Wu, Jiangjie Zhen, Ming, Ranchen, Song Yuan, Xuelin Zhang, Yu Zhou, Bingxin Li, Buyun Ma, Hongyuan Wang, Kang An, Wei Ji, Li Wen, Wen, Xuan, Xiangwen Kong, Yuankai Ma, Yuanwei Liang, Yun Mou, Bahtiyar Ahmidi, Bin Wang, Bo Li, Changxin Miao, Xu Chen, Chenrun Wang, Dapeng Shi, Deshan Sun, Dingyuan Hu, D. Nikhil Sai, Liu, Enle, Guangnan Huang, Yan, Gulin, Heng Wang, Haonan Jia, Haoyang Zhang, Jiahao Gong, Jiajie Guo, Jiashuai Liu, Jiahong Liu, Jie Feng, Jie Wu, Jiao-Ren Wu, Jie Yang, Jinguo Wang, Jingyang Zhang, Junzhe Lin, Kaixiang Li, Lei Xia, Zhou Li, Liang Zhao, L. M. Gu, Mei Chen, Menglin Wu, Ming Li, Mingxiao Li, Mingliang Li, Mingyao Liang, Na Wang, Hao, Nie, Qiling Wu, Qi Tan, Sun, Ran, Shuai Shuai, Shaoliang Pang, Shiliang Yang, Shuli Gao, Shanshan Yuan, Siqi Liu, Shihong Deng, Shilei Jiang, Sitong Liu, Tiancheng Cao, Tianyu Wang, Wenjin Deng, Xie, Wuxun, Weipeng Ming, Wenqing He and 45 more - ArXiv.org, CoRR 2025 cited by 104
- Multimodal Neuroimaging Feature Learning for Multiclass Diagnosis of Alzheimer's Disease
Authors: Siqi Liu, Sidong Liu, Weidong Cai, Hangyu Che, Sonia Pujol, Ron Kikinis, Dagan Feng, Michael Fulham, ADNI ADNI - IEEE Transactions on Biomedical Engineering, IEEE Trans. Biomed. Eng. 2014 cited by 618
- PRISM: A Multi-Modal Generative Foundation Model for Slide-Level Histopathology
Authors: George Shaikovski, Adam Casson, Kristen Severson, Eric Zimmermann, Yi Kan Wang, Jeremy D. Kunz, Juan Retamero, Gerard Oakley, David S. Klimstra, Christopher Kanan, Matthew G. Hanna, Michal Zelechowski, Julian Viret, Neil A. Tenenholtz, James Brian Hall, Nicolò Fusi, Razik Yousfi, Peter Hamilton, William A. Moye, Eugene Vorontsov, Siqi Liu, Thomas J. Fuchs - arXiv (Cornell University), CoRR 2024 cited by 64
- Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Authors: Ben C. Collins, Christie L. Hunter, Yansheng Liu, Birgit Schilling, George Rosenberger, Samuel L. Bader, Daniel W. Chan, Bradford W. Gibson, Anne‐Claude Gingras, Jason M. Held, Mio Hirayama‐Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P. Molloy, Robert L. Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N. Thomas, Shin‐Cheng Tzeng, Hui Zhang, Ruedi Aebersold - Nature Communications 2017 cited by 617
- Reinforcement Learning for Clinical Decision Support in Critical Care: Comprehensive Review
Authors: Siqi Liu, Kay Choong See, Kee Yuan Ngiam, Leo Anthony Celi, Xingzhi Sun, Mengling Feng - Journal of Medical Internet Research 2020 cited by 203
- Mitochondrial cristae architecture protects against mtDNA release and inflammation
Authors: Baiyu He, Huatong Yu, Shanshan Liu, Huayun Wan, Song Fu, Siqi Liu, Jun Yang, Zihan Zhang, Huanwei Huang, Qi Li, Fengchao Wang, Zhaodi Jiang, Qinghua Liu, Hui Jiang - Cell Reports 2022 cited by 129
- Myeloid‐Cell–Specific IL‐6 Signaling Promotes MicroRNA‐223‐Enriched Exosome Production to Attenuate NAFLD‐Associated Fibrosis
Authors: Xin Hou, Shi Yin, Ruixue Ren, Siqi Liu, Yong Liang, Yuxiao Liu, Yu Li, Ming‐Hua Zheng, George Kunos, Bin Gao, Hua Wang - Hepatology 2020 cited by 217
- Early diagnosis of Alzheimer's disease with deep learning
Authors: Siqi Liu, Sidong Liu, Weidong Cai, Sonia Pujol, Ron Kikinis, Dagan Feng - IEEE 11th International Symposium on Biomedical Imaging (ISBI) 2014 cited by 533
- A tissue injury sensing and repair pathway distinct from host pathogen defense
Authors: Siqi Liu, Yun Ha Hur, Xin Cai, Qian Cong, Yihao Yang, Chiwei Xu, Angelina M. Bilate, Kevin Andrew Uy Gonzales, Sara Martina Parigi, Christopher Cowley, Brian Hurwitz, Ji‐Dung Luo, Tiffany Tseng, Shiri Gur‐Cohen, Megan Sribour, Tatiana Omelchenko, John M. Levorse, H. Amalia Pasolli, Craig B. Thompson, Daniel Mucida, Elaine Fuchs - Cell 2023 cited by 105
- A second generation human haplotype map of over 3.1 million SNPs
Authors: Sarah S. Murray, David A. Hinds, Laura L. Stuvé, Dennis G. Ballinger, David R. Cox, George M. Weinstock, Donna M. Muzny, David A. Wheeler, Imtaz Yakub, John W. Belmont, Erica Sodergren, Erica Sodergren, Lynne Nazareth, Suzanne M. Leal, Thomas D. Willis, T. D. Willis, Andrew Boudreau, Paul Hardenbol, Albert V. Smith, Lalitha Krishnan, Shiran Pasternak, Marcela K. Tello-Ruiz, Richa Saxena, Paul I. W. de Bakker, Amy Camargo, Matthew Defelice, Mary Goyette, Yves Chrétien, Jessica Roy, Maura Faggart, Steve McCarroll, Brendan Blumenstiel, Huy Nguyen, Daniel J. Richter, Supriya Gupta, Melissa Parkin, Pardis C. Sabeti, Patrick Varilly, Alkes L. Price, Erich Stahl, Ellen Winchester, Rachel Barry, Chris Spencer, Fuli Yu, S. F. Schaffner, Bruce W. Birren, Mark J. Daly, Liuda Ziaugra, Jeff Barrett, Jamie Moore, Amy L. Camargo, Matthew DeFelice, Robert C. Onofrio, Hongbin Zhao, Hui Zhao, Xiaoli Tang, Weitao Hu, Wei Wang, Bo Zhang, Wei Lin, Qingrun Zhang, Siqi Liu, Changqing Zeng, Haoran Hu, Jun Yu, Jun Zhou, Hao Pan, Jian Wang, Yang Gao, Chaohua Li, Jeff Barrett, Richa Saxena, Paul I. W. de Bakker, Yangfan Liu, Shaun Purcell, Steve McCarroll, Mark J. Daly, Zhijian Yao, Yayun Shen, Ying Wang, Weiwei Sun, Yungang He, Xun Chu, Yangfan Liu, Xiaoyan Xiong, Liang Xu, Haifeng Wang, Yi Wang, Jin Li, Stephen Kwok‐Wing Tsui, J. Tze‐Fei Wong, Arthur L. Holden, Martin Leboeuf, Stéphanie Roumy, Kevin L. Gunderson, Arnold Oliphant, Mark S. Chee, Andrei Verner, Michael Phillips, Fanny Chagnon and 111 more - Nature 2007 cited by 4,608
- From Motor Control to Team Play in Simulated Humanoid Football
Authors: Siqi Liu, Guy Lever, Zhe Wang, Josh Merel, S. M. Ali Eslami, Daniel Hennes, Wojciech M. Czarnecki, Yuval Tassa, Shayegan Omidshafiei, Abbas Abdolmaleki, Noah Y. Siegel, Leonard Hasenclever, Luke Marris, Saran Tunyasuvunakool, H. Francis Song, Markus Wulfmeier, Paul Muller, Tuomas Haarnoja, Brendan D. Tracey, Karl Tuyls, Thore Graepel, Nicolas Heess - Science Robotics, Sci. Robotics 2022 cited by 92
- Prion-like Polymerization Underlies Signal Transduction in Antiviral Immune Defense and Inflammasome Activation
Authors: Xin Cai, Jueqi Chen, Hui Xu, Siqi Liu, Qiu‐Xing Jiang, Randal Halfmann, Zhijian J. Chen - Cell 2014 cited by 578
- Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics
Authors: Huanzi Zhong, Huahui Ren, Yan Lu, Chao Fang, Guixue Hou, Ziyi Yang, Bing Chen, Fangming Yang, Yue Zhao, Zhun Shi, Baojin Zhou, Jiegen Wu, Hua Zou, Jin Zi, Jiayu Chen, Xiao Bao, Yihe Hu, Yan Gao, Jun Zhang, Xun Xu, Yong Hou, Huanming Yang, Jian Wang, Siqi Liu, Huijue Jia, Lise Madsen, Susanne Brix, Karsten Kristiansen, Fang Liu, Junhua Li - EBioMedicine 2019 cited by 207
- Diffusion-Based Data Augmentation for Nuclei Image Segmentation
Authors: Xinyi Yu, Guanbin Li, Wei Lou, Siqi Liu, Xiang Wan, Yan Chen, Haofeng Li - Lecture notes in computer science, MICCAI (8) 2023 cited by 49
- Arbutin alleviates fatty liver by inhibiting ferroptosis via FTO/SLC7A11 pathway
Authors: Tianyu Jiang, Yao Xiao, Jinfeng Zhou, Zupeng Luo, Lin Yu, Qichao Liao, Siqi Liu, Xinyi Qi, Hao Zhang, Menglong Hou, Weiwei Miao, Batbold Batsaikhan, Turtushikh Damba, Yunxiao Liang, Yixing Li, Lei Zhou - Redox Biology 2023 cited by 86
- Stem cells expand potency and alter tissue fitness by accumulating diverse epigenetic memories
Authors: Kevin Andrew Uy Gonzales, Lisa Polak, Irina Matos, Matthew Tierney, Anita Gola, Ellen Wong, Nicole R. Infarinato, Maria Nikolova, Shijing Luo, Siqi Liu, Jesse Novak, Kenneth Lay, H. Amalia Pasolli, Elaine Fuchs - Science 2021 cited by 141
- 3D Mask Face Anti-spoofing with Remote Photoplethysmography
Authors: Siqi Liu, Pong C. Yuen, Shengping Zhang, Guoying Zhao - Lecture notes in computer science, ECCV (7) 2016 cited by 197
