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Yvan Saeys

Active 2002–2026

225
Papers
37,108
Citations
81
h-index
162
i10-index

Citations

Citations per year for Yvan Saeys1986: 1 citations1989: 1 citations1990: 1 citations1992: 1 citations1993: 1 citations1999: 1 citations2001: 2 citations2002: 1 citations2003: 8 citations2004: 23 citations2005: 23 citations2006: 24 citations2007: 58 citations2008: 105 citations2009: 159 citations2010: 201 citations2011: 254 citations2012: 327 citations2013: 271 citations2014: 353 citations2015: 364 citations2016: 385 citations2017: 494 citations2018: 637 citations2019: 1,255 citations2020: 1,717 citations2021: 2,122 citations2022: 2,139 citations2023: 2,004 citations2024: 2,783 citations2025: 1,728 citations2026: 137 citations1987–1988: no citations, so these years are not shown1991: no citations, so this year is not shown1994–1998: no citations, so these years are not shown2000: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 5,293 citing papers, 21.7% of this breakdownChina: 3,435 citing papers, 14.1% of this breakdownUnited Kingdom: 1,597 citing papers, 6.5% of this breakdownGermany: 1,583 citing papers, 6.5% of this breakdownFrance: 931 citing papers, 3.8% of this breakdownBelgium: 864 citing papers, 3.5% of this breakdownCanada: 761 citing papers, 3.1% of this breakdownSpain: 748 citing papers, 3.1% of this breakdownAustralia: 700 citing papers, 2.9% of this breakdownItaly: 616 citing papers, 2.5% of this breakdownSwitzerland: 575 citing papers, 2.3% of this breakdownJapan: 569 citing papers, 2.3% of this breakdown
0%21.7%Other 27.7%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology35.1%
  • Medicine22.1%
  • Immunology and Microbiology14.3%
  • Computer Science13.7%
  • Neuroscience5.5%
  • Agricultural and Biological Sciences2.2%
  • Other7.1%

Topics

  • Single-cell and spatial transcriptomics5.9%
  • Immune cells in cancer4%
  • Gene expression and cancer classification3.4%
  • Immune Cell Function and Interaction2.7%
  • Neuroinflammation and Neurodegeneration Mechanisms2%
  • T-cell and B-cell Immunology2%
  • Other80%

Coauthors

All papers

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  1. NicheNet: modeling intercellular communication by linking ligands to target genes

    Authors: Robin Browaeys, Wouter Saelens, Yvan Saeys - Nature Methods 2019 cited by 2,218

  2. A scalable SCENIC workflow for single-cell gene regulatory network analysis

    Authors: Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, Quentin Rouchon, Toni Verbeiren, Dries De Maeyer, Joke Reumers, Yvan Saeys, Stein Aerts - Nature Protocols 2020 cited by 1,544

  3. Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

    Authors: Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Camille Wagner, Anneleen Remmerie, Anna Bujko, Liesbet Martens, Tinne Thoné, Robin Browaeys, Federico F. De Ponti, Bavo Vanneste, C. Zwicker, Freya R. Svedberg, Tineke Vanhalewyn, Amanda Gonçalves, Saskia Lippens, Bert Devriendt, Eric Cox, Giuliano Ferrero, Valérie Wittamer, Andy Willaert, Suzanne J. F. Kaptein, Johan Neyts, Kai Dallmeier, Peter Geldhof, Stijn Casaert, Bart Deplancke, Peter ten Dijke, Anne Hoorens, Aude Vanlander, Frederik Berrevoet, Yves Van Nieuwenhove, Yvan Saeys, Wouter Saelens, Hans Van Vlierberghe, Lindsey Devisscher, Charlotte L. Scott - Cell 2022 cited by 981

  4. FlowSOM: Using self‐organizing maps for visualization and interpretation of cytometry data

    Authors: Sofie Van Gassen, Britt Callebaut, Mary J. van Helden, Bart N. Lambrecht, Piet Demeester, Tom Dhaene, Yvan Saeys - Cytometry Part A 2015 cited by 2,052

  5. A review of feature selection techniques in bioinformatics

    Authors: Yvan Saeys, Iñaki Inza, Pedro Larrañaga - Bioinformatics, Bioinform. 2007 cited by 5,289

  6. A comparison of single-cell trajectory inference methods

    Authors: Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys - Nature Biotechnology 2019 cited by 1,734

  7. A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment

    Authors: Hannah Van Hove, Liesbet Martens, Isabelle Scheyltjens, Karen De Vlaminck, Ana Rita Pombo Antunes, Sofie De Prijck, Niels Vandamme, Sebastiaan De Schepper, Gert Van Isterdael, Charlotte L. Scott, Jeroen Aerts, Geert Berx, Guy E. Boeckxstaens, Roosmarijn E. Vandenbroucke, Lars Vereecke, Diederik Moechars, Martin Guilliams, Jo A. Van Ginderachter, Yvan Saeys, Kiavash Movahedi - Nature Neuroscience 2019 cited by 1,111

  8. Single-cell profiling of myeloid cells in glioblastoma across species and disease stage reveals macrophage competition and specialization

    Authors: Ana Rita Pombo Antunes, Isabelle Scheyltjens, Francesca Lodi, Julie Messiaen, Asier Antoranz, Johnny Duerinck, Daliya Kancheva, Liesbet Martens, Karen De Vlaminck, Hannah Van Hove, Signe Schmidt Kjølner Hansen, Francesca M. Bosisio, Koen Van der Borght, Steven De Vleeschouwer, Raf Sciot, Luc Bouwens, Michiel Verfaillie, Niels Vandamme, Roosmarijn E. Vandenbroucke, Olivier De Wever, Yvan Saeys, Martin Guilliams, Conny Gysemans, Bart Neyns, Frederik De Smet, Diether Lambrechts, Jo A. Van Ginderachter, Kiavash Movahedi - Nature Neuroscience 2021 cited by 673

  9. Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver

    Authors: Anneleen Remmerie, Liesbet Martens, Tinne Thoné, Ângela Castoldi, Ruth Seurinck, Benjamin Pavie, Joris Roels, Bavo Vanneste, Sofie De Prijck, Mathias Vanhockerhout, Mushida Binte Abdul Latib, Lindsey Devisscher, Anne Hoorens, Johnny Bonnardel, Niels Vandamme, Anna Kremer, Peter Borghgraef, Hans Van Vlierberghe, Saskia Lippens, Edward J. Pearce, Yvan Saeys, Charlotte L. Scott - Immunity 2020 cited by 569

  10. A cell atlas of human thymic development defines T cell repertoire formation

    Authors: Jong-Eun Park, Rachel A. Botting, Cecilia Domínguez Conde, Dorin-Mirel Popescu, Marieke Lavaert, Daniel J. Kunz, Issac Goh, Emily Stephenson, Roberta Ragazzini, Elizabeth Tuck, Anna Wilbrey-Clark, Kenny Roberts, Veronika R. Kedlian, John R. Ferdinand, Xiaoling He, Simone Webb, Daniel Maunder, Niels Vandamme, Krishnaa T. Mahbubani, Krzysztof Polański, Lira Mamanova, Liam Bolt, David Crossland, Fabrizio De Rita, Andrew Fuller, Andrew Filby, Gary Reynolds, David Dixon, Kourosh Saeb‐Parsy, Steven Lisgo, Deborah J. Henderson, Roser Vento‐Tormo, Omer Ali Bayraktar, Roger A. Barker, Kerstin B. Meyer, Yvan Saeys, Paola Bonfanti, Sam Behjati, Menna R. Clatworthy, Tom Taghon, Muzlifah Haniffa, Sarah A. Teichmann - Science 2020 cited by 734

  11. Stellate Cells, Hepatocytes, and Endothelial Cells Imprint the Kupffer Cell Identity on Monocytes Colonizing the Liver Macrophage Niche

    Authors: Johnny Bonnardel, Wouter T’Jonck, Djoere Gaublomme, Robin Browaeys, Charlotte L. Scott, Liesbet Martens, Bavo Vanneste, Sofie De Prijck, Sergei A. Nedospasov, Anna Kremer, Evelien Van Hamme, Peter Borghgraef, Wendy Toussaint, Pieter De Bleser, Inge Mannaerts, Alain Beschin, Leo A. van Grunsven, Bart N. Lambrecht, Tom Taghon, Saskia Lippens, Dirk Elewaut, Yvan Saeys, Martin Guilliams - Immunity 2019 cited by 611

  12. Bone marrow-derived monocytes give rise to self-renewing and fully differentiated Kupffer cells

    Authors: Charlotte L. Scott, Fang Zheng, Patrick De Baetselier, Liesbet Martens, Yvan Saeys, Sofie De Prijck, Saskia Lippens, Chloé Abels, Steve Schoonooghe, Geert Raes, Nick Devoogdt, Bart N. Lambrecht, Alain Beschin, Martin Guilliams - Nature Communications 2016 cited by 850

  13. A cellular hierarchy in melanoma uncouples growth and metastasis

    Authors: Panagiotis Karras, Ignacio Bordeu, Joanna Poźniak, Ada Nowosad, Cecilia Pazzi, Nina Van Raemdonck, Ewout Landeloos, Yannick Van Herck, Dennis Pedri, Greet Bervoets, Samira Makhzami, Jia Hui Khoo, Benjamin Pavie, Jochen Lamote, Oskar Marín-Béjar, Michael Dewaele, Han Liang, Xingju Zhang, Yichao Hua, Jasper Wouters, Robin Browaeys, Gabriele Bergers, Yvan Saeys, Francesca M. Bosisio, Joost van den Oord, Diether Lambrechts, Anil K. Rustgi, Oliver Bechter, Cédric Blanpain, Benjamin D. Simons, Florian Rambow, Jean‐Christophe Marine - Nature 2022 cited by 250

  14. A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma

    Authors: Joanna Poźniak, Dennis Pedri, Ewout Landeloos, Yannick Van Herck, Asier Antoranz, Lukas Vanwynsberghe, Ada Nowosad, Niccolò Roda, Samira Makhzami, Greet Bervoets, Lucas F. Maciel, Carlos Ariel Pulido-Vicuña, Lotte Pollaris, Ruth Seurinck, Fang Zhao, Karine Flem‐Karlsen, William Damsky, Limin Chen, Despoina Karagianni, Sonia Cinque, Sam Kint, Katy Vandereyken, Benjamin Rombaut, Thierry Voet, Frank Vernaillen, Wim Annaert, Diether Lambrechts, Veerle Boecxstaens, Yvan Saeys, Joost van den Oord, Francesca M. Bosisio, Panagiotis Karras, A. Hunter Shain, Marcus Bosenberg, Eleonora Leucci, Annette Paschen, Florian Rambow, Oliver Bechter, Jean‐Christophe Marine - Cell 2024 cited by 195

  15. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection

    Authors: Cédric Bosteels, Katrijn Neyt, Manon Vanheerswynghels, Mary J. van Helden, Dorine Sichien, Nincy Debeuf, Sofie De Prijck, Victor Bosteels, Niels Vandamme, Liesbet Martens, Yvan Saeys, Els Louagie, Manon Lesage, David L. Williams, Shiau‐Choot Tang, Johannes U. Mayer, Franca Ronchese, Charlotte L. Scott, Hamida Hammad, Martin Guilliams, Bart N. Lambrecht - Immunity 2020 cited by 408

  16. Unsupervised High-Dimensional Analysis Aligns Dendritic Cells across Tissues and Species

    Authors: Martin Guilliams, Charles‐Antoine Dutertre, Charlotte L. Scott, Naomi McGovern, Dorine Sichien, Svetoslav Chakarov, Sofie Van Gassen, Jinmiao Chen, Michael Poidinger, Sofie De Prijck, Simon J. Tavernier, Ivy Low, Sergio Erdal Irac, Citra Nurfarah Zaini Mattar, Hermi Sumatoh, Gillian Low, Tam John Kit Chung, Dedrick Kok Hong Chan, Ker‐Kan Tan, Tony Lim Kiat Hon, Even Fossum, Bjarne Bogen, Mahesh Choolani, Jerry Kok Yen Chan, Anis Larbi, Hervé Luche, Sandrine Henri, Yvan Saeys, Evan W. Newell, Bart N. Lambrecht, Bernard MALISSEN, Florent Ginhoux - Immunity 2016 cited by 796

  17. Yolk Sac Macrophages, Fetal Liver, and Adult Monocytes Can Colonize an Empty Niche and Develop into Functional Tissue-Resident Macrophages

    Authors: Lianne van de Laar, Wouter Saelens, Sofie De Prijck, Liesbet Martens, Charlotte L. Scott, Gert Van Isterdael, Eik Hoffmann, Rudi Beyaert, Yvan Saeys, Bart N. Lambrecht, Martin Guilliams - Immunity 2016 cited by 627

  18. MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    Authors: Robin Browaeys, Jeroen Gilis, Chananchida Sang-aram, Pieter De Bleser, Levi Hoste, Simon J. Tavernier, Diether Lambrechts, Ruth Seurinck, Yvan Saeys - 2023 cited by 127

  19. Targeting ferroptosis protects against experimental (multi)organ dysfunction and death

    Authors: Samya Van Coillie, Emily Van San, Ines Goetschalckx, Bartosz Wiernicki, Banibrata Mukhopadhyay, Wulf Tonnus, Sze Men Choi, Ria Roelandt, Catalina Dumitrascu, Ludwig V. Lamberts, Geert Dams, Wannes Weyts, Jelle Huysentruyt, Behrouz Hassannia, Irina Ingold, Suhas S. Lele, Evelyne Meyer, Maya Berg, Ruth Seurinck, Yvan Saeys, An Vermeulen, Alexander L.N. van Nuijs, Marcus Conrad, Andreas Linkermann, Mohan Rajapurkar, Peter Vandenabeele, Eric A. J. Hoste, Koen Augustyns, Tom Vanden Berghe - Nature Communications 2022 cited by 177

  20. SpatialData: an open and universal data framework for spatial omics

    Authors: Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B. Shrestha, Benjamin Rombaut, Lotte Pollaris, Laurens Lehner, Harald Vöhringer, Ilia Kats, Yvan Saeys, Sinem K. Saka, Wolfgang Huber, Moritz Gerstung, Josh Moore, Fabian J. Theis, Oliver Stegle - Nature Methods 2024 cited by 186

  21. The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages

    Authors: Charlotte L. Scott, Wouter T’Jonck, Liesbet Martens, Helena Todorov, Dorine Sichien, Bieke Soen, Johnny Bonnardel, Sofie De Prijck, Niels Vandamme, Robrecht Cannoodt, Wouter Saelens, Bavo Vanneste, Wendy Toussaint, Pieter De Bleser, Nozomi Takahashi, Peter Vandenabeele, Sandrine Henri, Clare Pridans, David Hume, Bart N. Lambrecht, Patrick De Baetselier, Simon Milling, Jo A. Van Ginderachter, Bernard MALISSEN, Geert Berx, Alain Beschin, Yvan Saeys, Martin Guilliams - Immunity 2018 cited by 284

  22. Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches

    Authors: Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Anna Bujko, Liesbet Martens, Tinne Thoné, Robin Browaeys, Federico F. De Ponti, Anneleen Remmerie, Camille Wagner, Bavo Vanneste, C. Zwicker, Tineke Vanhalewyn, Amanda Gonçalves, Saskia Lippens, Bert Devriendt, Eric Cox, Giuliano Ferrero, Valérie Wittamer, Andy Willaert, Suzanne J. F. Kaptein, Johan Neyts, Kai Dallmeier, Peter Geldhof, Stijn Casaert, Bart Deplancke, Peter ten Dijke, Anne Hoorens, Aude Vanlander, Frederik Berrevoet, Yves Van Nieuwenhove, Yvan Saeys, Wouter Saelens, Hans Van Vlierberghe, Lindsey Devisscher, Charlotte L. Scott - 2021 cited by 97

  23. Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions

    Authors: Jos R. Wendrich, Baojun Yang, Niels Vandamme, Kevin Verstaen, Wouter Smet, Celien Van de Velde, Max Minne, Brecht Wybouw, Eliana Mor, Helena E. Arents, Jonah Nolf, Julie Van Duyse, Gert Van Isterdael, Steven Maere, Yvan Saeys, Bert De Rybel - Science 2020 cited by 328

  24. Macrophages are metabolically heterogeneous within the tumor microenvironment

    Authors: Xenia Geeraerts, Juan Fernández-García, Felix J. Hartmann, Kyra E. de Goede, Liesbet Martens, Yvon Elkrim, Ayla Debraekeleer, Benoı̂t Stijlemans, Anke Vandekeere, Gianmarco Rinaldi, Riet De Rycke, Mélanie Planque, Dorien Broekaert, Elisa Meinster, Emile Clappaert, Pauline M. R. Bardet, Aleksandar Murgaski, Conny Gysemans, Frank Aboubakar Nana, Yvan Saeys, Sean C. Bendall, Damya Laoui, Jan Van den Bossche, Sarah‐Maria Fendt, Jo A. Van Ginderachter - Cell Reports 2021 cited by 135