Oliver Stegle

Active 2008–2026

185
Papers
49,354
Citations
91
h-index
159
i10-index

Citations

Citations per year for Oliver Stegle1976: 1 citations1977: 1 citations1979: 1 citations1982: 1 citations1983: 1 citations1987: 2 citations1989: 2 citations1990: 1 citations1992: 1 citations1994: 3 citations1995: 1 citations1999: 2 citations2001: 1 citations2002: 2 citations2003: 4 citations2004: 2 citations2005: 8 citations2006: 5 citations2007: 9 citations2008: 6 citations2009: 16 citations2010: 20 citations2011: 69 citations2012: 116 citations2013: 192 citations2014: 254 citations2015: 368 citations2016: 522 citations2017: 806 citations2018: 1,011 citations2019: 2,093 citations2020: 2,511 citations2021: 2,938 citations2022: 2,516 citations2023: 2,255 citations2024: 3,018 citations2025: 1,892 citations2026: 203 citations1978: no citations, so this year is not shown1980–1981: no citations, so these years are not shown1984–1986: no citations, so these years are not shown1988: no citations, so this year is not shown1991: no citations, so this year is not shown1993: no citations, so this year is not shown1996–1998: no citations, so these years are not shown2000: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 7,672 citing papers, 24.7% of this breakdownChina: 3,521 citing papers, 11.3% of this breakdownUnited Kingdom: 2,971 citing papers, 9.6% of this breakdownGermany: 2,225 citing papers, 7.2% of this breakdownCanada: 1,028 citing papers, 3.3% of this breakdownAustralia: 1,024 citing papers, 3.3% of this breakdownFrance: 928 citing papers, 3% of this breakdownNetherlands: 909 citing papers, 2.9% of this breakdownSwitzerland: 820 citing papers, 2.6% of this breakdownSpain: 775 citing papers, 2.5% of this breakdownItaly: 748 citing papers, 2.4% of this breakdownSweden: 700 citing papers, 2.3% of this breakdown
0%24.7%Other 24.9%

Fields

  • Biochemistry, Genetics and Molecular Biology66.1%
  • Medicine14.3%
  • Computer Science4.9%
  • Agricultural and Biological Sciences4.4%
  • Immunology and Microbiology3.6%
  • Neuroscience2%
  • Other4.7%

Topics

  • Single-cell and spatial transcriptomics9.4%
  • Gene expression and cancer classification3.5%
  • Epigenetics and DNA Methylation3.1%
  • Bioinformatics and Genomic Networks3%
  • Genetic Associations and Epidemiology2.7%
  • Cell Image Analysis Techniques2.5%
  • Other75.8%

Coauthors

All papers

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  1. Cell2location maps fine-grained cell types in spatial transcriptomics

    Authors: , , , , , , , , , , , , , , , , , , , - Nature Biotechnology 2022 cited by 1,235

  2. The Human Cell Atlas

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , John C Marioni, Miriam Merad, Musa Mhlanga, Martijn Nawijn, Mihai Netea, Garry Nolan, Dana Pe'er, Anthony Phillipakis, Chris P Ponting, Stephen Quake, Wolf Reik, Orit Rozenblatt-Rosen, Joshua Sanes, Rahul Satija, Ton N Schumacher, Alex Shalek, Ehud Shapiro, Padmanee Sharma, Jay W Shin, Oliver Stegle, Michael Stratton, Michael J T Stubbington, Fabian J Theis, Matthias Uhlen, Alexander van Oudenaarden, Allon Wagner, Fiona Watt, Jonathan Weissman, Barbara Wold, Ramnik Xavier, Nir Yosef, Human Cell Atlas Meeting Participants - eLife 2017 cited by 2,352

  3. Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets

    Authors: , , , , , , , , - Molecular Systems Biology 2018 cited by 1,459

  4. MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data

    Authors: , , , , , , - Genome biology 2020 cited by 1,007

  5. Eleven grand challenges in single-cell data science

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion Măndoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Alicja Rączkowska, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth - Genome biology 2020 cited by 1,429

  6. SpatialDE: identification of spatially variable genes

    Authors: , , - Nature Methods 2018 cited by 797

  7. Haplotype-resolved diverse human genomes and integrated analysis of structural variation

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Marta Byrska-Bishop, André Corvelo, Uday S. Evani, Tsung-Yu Lu, Mark Chaisson, Junjie Chen, Chong Li, Harrison Brand, Aaron M. Wenger, Maryam Ghareghani, William T. Harvey, Benjamin Raeder, Patrick Hasenfeld, Allison Regier, Haley Abel, Ira M. Hall, Paul Flicek, Oliver Stegle, Mark Gerstein, José M. C. Tubío, Zepeng Mu, Yang Li, Xinghua Shi, Alex Hastie, Kai Ye, Zechen Chong, Ashley D. Sanders, Michael C. Zody, Michael E. Talkowski, Ryan E. Mills, Scott E. Devine, Charles Lee, Jan O. Korbel, Tobias Marschall, Evan E. Eichler - Science 2021 cited by 816

  8. An integrated map of structural variation in 2,504 human genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Taejeong Bae, Eliza Cerveira, Peter S. Chines, Zechen Chong, Laura Clarke, Elif Dal, Li Ding, Sarah B. Emery, Xian Fan, Madhusudan Gujral, Fatma Kahveci, Jeffrey M. Kidd, Yu Kong, Eric-Wubbo Lameijer, Shane McCarthy, Paul Flicek, Richard A. Gibbs, Gábor Marth, Christopher E. Mason, Androniki Menelaou, Donna M. Muzny, Bradley J. Nelson, Amina Noor, Nicholas F. Parrish, Matthew Pendleton, Andrew Quitadamo, Benjamin Raeder, Eric E. Schadt, Mallory Romanovitch, Andreas Schlattl, Robert Sebra, Andrey A. Shabalin, Andreas Untergasser, Jerilyn A. Walker, Min Wang, Fuli Yu, Chengsheng Zhang, Jing Zhang, Xiangqun Zheng-Bradley, Wanding Zhou, Thomas Zichner, Jonathan Sebat, Mark A. Batzer, Steven A. McCarroll, Ryan E. Mills, Mark Gerstein, Ali Bashir, Oliver Stegle, Scott E. Devine, Charles Lee, Evan E. Eichler, Jan O. Korbel - Nature 2015 cited by 2,695

  9. Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michael T. Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia, Debyani Chakravarty, Walid K. Chatila, Ino de Bruijn, Galen F. Gao, Benjamin E. Gross, Zachary Heins, Ritika Kundra, Konnor La, Marc Ladanyi, Augustin Luna, Moriah G. Nissan, Angelica Ochoa, Sarah Phillips, Ed Reznik, Francisco Sánchez-Vega, Chris Sander, Nikolaus Schultz, Robert E. Sheridan, S. Onur Sumer, Yichao Sun, Barry S. Taylor, Jioajiao Wang, Hongxin Zhang, Pavana Anur, Myron Peto and 635 more - Cancer Cell 2018 cited by 962

  10. Computational principles and challenges in single-cell data integration

    Authors: , , , - Nature Biotechnology 2021 cited by 489

  11. Deep learning for computational biology

    Authors: , , , - Molecular Systems Biology 2016 cited by 1,530

  12. The scverse project provides a computational ecosystem for single-cell omics data analysis

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian J. Theis - Nature Biotechnology 2023 cited by 343

  13. The Polygenic and Monogenic Basis of Blood Traits and Diseases

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Peter W.F. Wilson, Hélène Choquet, John Danesh, Emanuele Di Angelantonio, Niki Dimou, Jingzhong Ding, Paul Elliott, Tõnu Esko, Michele K. Evans, Stephan B. Felix, James S. Floyd, Linda Broer, Niels Grarup, Michael H. Guo, Qi Guo, Andreas Greinacher, Jeff Haessler, Torben Hansen, Joanna M. M. Howson, Wei Huang, Eric Jorgenson, Tim Kacprowski, Mika Kähönen, Yoichiro Kamatani, Masahiro Kanai, Savita Karthikeyan, Fotios Koskeridis, Leslie A. Lange, Terho Lehtimäki, Allan Linneberg, Yongmei Liu, Leo‐Pekka Lyytikäinen, Ani Manichaikul, Koichi Matsuda, Karen L. Mohlke, Nina Mononen, Yoshinori Murakami, Girish N. Nadkarni, Kjell Nikus, Nathan Pankratz, Oluf Pedersen, Michael Preuß, Bruce M. Psaty, Olli T. Raitakari, Stephen S. Rich, Blanca Rodríguez, Jonathan D. Rosen, Jerome I. Rotter, Petra Schubert, Cassandra N. Spracklen, Praveen Surendran, Hua Tang, Jean‐Claude Tardif, Mohsen Ghanbari, Uwe Völker, Henry Völzke, Nicholas A. Watkins, Stefan Weiß, Na Cai, Kousik Kundu, Stephen B. Watt, Klaudia Walter, Alan B. Zonderman, Kelly Cho, Yun Li, Ruth J. F. Loos, Julian C. Knight, Michel Georges, Oliver Stegle, Εvangelos Εvangelou and 12 more - Cell 2020 cited by 756

  14. Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

    Authors: , , , , - Nature Protocols 2012 cited by 1,264

  15. Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

    Authors: , , , , , , , , , - Nature Methods 2014 cited by 1,205

  16. Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

    Authors: , , - Genome biology 2019 cited by 390

  17. Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Aleksandar Janjic, Lucas E. Wange, Johannes Bagnoli, Wolfgang Enard, Marta Gut, Rickard Sandberg, Itoshi Nikaido, Marta Gut, Oliver Stegle, Holger Heyn - Nature Biotechnology 2020 cited by 533

  18. Computational and analytical challenges in single-cell transcriptomics

    Authors: , , - Nature Reviews Genetics 2015 cited by 1,320

  19. A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Marko Nikolić, Nikitas Georgakopoulos, Krishnaa T. Mahbubani, Kourosh Saeb‐Parsy, Omer Ali Bayraktar, Menna R. Clatworthy, Oliver Stegle, Natsuhiko Kumasaka, Sarah A. Teichmann, Kerstin B. Meyer - Nature Genetics 2022 cited by 220

  20. Transcriptome and genome sequencing uncovers functional variation in humans

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Helena Kilpinen, Sergi Beltrán, Marta Gut, Katja Kahlem, Vyacheslav Amstislavskiy, Oliver Stegle, Matti Pirinen, Stephen B. Montgomery, Peter Donnelly, Mark I. McCarthy, Paul Flicek, Tim M. Strom, Hans Lehrach, Stefan Schreiber, Ralf Sudbrak, Ángel Carracedo, Stylianos E. Antonarakis, Robert Häsler, Ann‐Christine Syvänen, Gert‐Jan B. van Ommen, Alvis Brāzma, Thomas Meitinger, Philip Rosenstiel, Roderic Guigó, Marta Gut, Xavier Estivill, Emmanouil T. Dermitzakis - Nature 2013 cited by 2,195

  21. Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

    Authors: , , , , , , , , - Nature Biotechnology 2015 cited by 1,300

  22. Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Nilofar Sharifi, Eva M. Janssen‐Megens, Marie‐Laure Yaspo, Matthias Linser, Alexander Kovacsovics, Laura Clarke, David Richardson, Avik Datta, Paul Flicek - Cell 2016 cited by 1,192

  23. Spatial multiomics map of trophoblast development in early pregnancy

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , - Nature 2023 cited by 292

  24. Multi-omics profiling of mouse gastrulation at single-cell resolution

    Authors: , , , , , , , , , , , , , , , , , , , , , , , - Nature 2019 cited by 516