Zichen Wang
Active 1999–2026
- 333
- Papers
- 38,278
- Citations
- 63
- h-index
- 179
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology38.4%
- Medicine30.9%
- Computer Science9%
- Immunology and Microbiology6.4%
- Neuroscience4.8%
- Engineering3.8%
- Other6.7%
Topics
- Bioinformatics and Genomic Networks3%
- Single-cell and spatial transcriptomics2.8%
- Epigenetics and DNA Methylation2.1%
- Computational Drug Discovery Methods1.8%
- RNA modifications and cancer1.6%
- Cancer-related molecular mechanisms research1.4%
- Other87.3%
Coauthors
- Avi Ma’ayan37
- Corey W. Arnold14
- Jun Lyu14
- William Speier14
- Xinyu Zhang12
- Yi Liu11
- Qi Wang10
- Xiaoyan Chen10
- Alexander Lachmann9
- Hongwei Du9
- Huzefa Rangwala9
- Jiandong Cui9
- Li Li9
- Luming Zhang9
- Neil R. Clark9
- Qiaonan Duan9
- Tao Zhang9
- Andrew D. Rouillard8
- Haimei Li8
- Haiyan Yin8
- Jingjing Wang8
- Mara Pleasure8
- Zhijun Meng8
- Didi Han7
All papers
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
Authors: Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L. Jenkins, Kathleen M. Jagodnik, Alexander Lachmann, Michael G. McDermott, Caroline D. Monteiro, Gregory W. Gundersen, Avi Ma'ayan - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 11,707
- Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
Authors: Edward Y. Chen, Christopher M. Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Gabriela Vaz Meirelles, Neil R. Clark, Avi Ma'ayan - BMC Bioinformatics, BMC Bioinform. 2013 cited by 8,412
- PromptRobust: Towards Evaluating the Robustness of Large Language Models on Adversarial Prompts
Authors: Kaijie Zhu, Jindong Wang, Jiaheng Zhou, Zichen Wang, Hao Chen, Yidong Wang, Linyi Yang, Wei Ye, Neil Zhenqiang Gong, Yue Zhang, Xing Xie - Workshop on Large AI Systems and Models with Privacy and Safety Analysis, LAMPS@CCS 2023 cited by 274
- ChEA3: transcription factor enrichment analysis by orthogonal omics integration
Authors: Alexandra B. Keenan, Denis Torre, Alexander Lachmann, Ariel K. Leong, Megan L. Wojciechowicz, Vivian Utti, Kathleen M. Jagodnik, Eryk Kropiwnicki, Zichen Wang, Avi Ma'ayan - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 1,204
- Single-cell immune landscape of human atherosclerotic plaques
Authors: Dawn Fernandez, Adeeb Rahman, Nicolas Fernandez, Aleksey Chudnovskiy, El-ad David Amir, Letizia Amadori, Nayaab S Khan, Christine Wong, Roza Shamailova, Christopher A. Hill, Zichen Wang, Romain Remark, Jennifer R. Li, Christian Pina, Christopher Faries, Ahmed J. Awad, Noah Moss, Johan Björkegren, Seunghee Kim‐Schulze, Sacha Gnjatic, Avi Ma’ayan, J Mocco, Peter L. Faries, Miriam Mérad, Chiara Giannarelli - Nature Medicine 2019 cited by 971
- The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
Authors: Andrew D. Rouillard, Gregory W. Gundersen, Nicolas F. Fernandez, Zichen Wang, Caroline D. Monteiro, Michael G. McDermott, Avi Ma'ayan - Database, Database J. Biol. Databases Curation 2016 cited by 1,677
- Obesity causes mitochondrial fragmentation and dysfunction in white adipocytes due to RalA activation
Authors: Wenmin Xia, Preethi Veeragandham, Yu Cao, Yayun Xu, Torrey E. Rhyne, Jiaxin Qian, Chao‐Wei Hung, Peng Zhao, Ying Jones, Hui Gao, Christopher Liddle, Ruth T. Yu, Michael Downes, Ronald M. Evans, Mikael Rydén, Martin Wabitsch, Zichen Wang, Hiroyuki Hakozaki, Johannes Schöneberg, Shannon M. Reilly, Jianfeng Huang, Alan R. Saltiel - Nature Metabolism 2024 cited by 140
- GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model
Authors: Xiaodong Yang, Guole Liu, Guihai Feng, Dechao Bu, Pengfei Wang, Jie Jiang, Shubai Chen, Qinmeng Yang, Hefan Miao, Yiyang Zhang, Zhenpeng Man, Zhongming Liang, Zichen Wang, Yaning Li, Zheng Li, Yana Liu, Yao Tian, Wenhao Liu, Cong Li, Ao Li, Jingxi Dong, Zhilong Hu, Fang Chen, Lina Cui, Zixu Deng, Haiping Jiang, Wentao Cui, Jiahao Zhang, Zhaohui Yang, Handong Li, Xingjian He, Liqun Zhong, Jiaheng Zhou, Zijian Wang, Qingqing Long, Ping Xu, Xin Li, Hongmei Wang, Baoyang Hu, Wei Li, Fei Gao, Jingtao Guo, Leqian Yu, Qi Gu, Weiwei Zhai, Zhengting Zou, Guihai Feng, Wenhao Liu, Yao Tian, Fang Chen, Jingxi Dong, Yana Liu, Jingqi Yu, Wenhui Wu, Xinxin Lin, Cong Li, Yu Zou, Yongshun Ren, Fan Li, Yixiao Zhao, Yike Xin, Longfei Han, Shuyang Jiang, Kai Ma, Qicheng Chen, Haoyuan Wang, Huanhuan Wu, Chaofan He, Yilong Hu, Shuyu Guo, Yiyun Li, Yuanchun Zhou, Yangang Wang, Xuezhi Wang, Pengfei Wang, Fei Li, Zhen Meng, Zaitian Wang, Ping Xu, Wentao Cui, Zhilong Hu, Huimin He, Shan Zong, Jiajia Wang, Yan Chen, Chunyang Zhang, Chengrui Wang, Ran Zhang, Meng Xiao, Yining Wang, Yiqiang Chen, Yi Zhao, Xiaodong Yang, Dechao Bu, Xin Qin, Jiaxin Qin, Zhaohui Yang, Chenhao Li, Zhufeng Xu, Zeyuan Zhang and 49 more - Cell Research 2024 cited by 104
- Immobilization of lipase on hydrophobic MOF synthesized simultaneously with oleic acid and application in hydrolysis of natural oils for improving unsaturated fatty acid production
Authors: Geling Kuang, Zichen Wang, Zichen Wang, Xiuyan Luo, Zixin Geng, Jiandong Cui, Muhammad Bilal, Ziyuan Wang, Ziyuan Wang, Shiru Jia - International Journal of Biological Macromolecules 2023 cited by 95
- The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
Authors: Alexandra Keenan, Sherry L. Jenkins, Kathleen M. Jagodnik, Simon Koplev, Edward He, Denis Torre, Zichen Wang, Anders B. Dohlman, Moshe C. Silverstein, Alexander Lachmann, Maxim V. Kuleshov, Avi Ma’ayan, Vasileios Stathias, Raymond Terryn, Daniel J. Cooper, Michele Forlin, Amar Koleti, D. Vidović, Caty Chung, Stephan C. Schürer, Jouzas Vasiliauskas, Marcin Pilarczyk, Behrouz Shamsaei, Mehdi Fazel, Yan Ren, Wen Niu, Nicholas A. Clark, Shana White, Naim Al Mahi, Lixia Zhang, Michal Kouril, John F. Reichard, Siva Sivaganesan, Mario Medvedovic, Jarek Meller, Rick J. Koch, Marc R. Birtwistle, Ravi Iyengar, Eric A. Sobie, Evren U. Azeloglu, Julia Kaye, Jeannette M. Osterloh, Kelly Haston, Jaslin Kalra, Steve Finkbiener, Jonathan Li, Pamela Milani, Miriam Adam, Renan Escalante-Chong, Karen Sachs, Alex Lenail, Divya Ramamoorthy, Ernest Fraenkel, Gavin Daigle, Uzma Hussain, Alyssa Coye, Jeffrey Rothstein, Dhruv Sareen, Loren Ornelas, Maria G. Bañuelos, Berhan Mandefro, Ritchie Ho, Clive N. Svendsen, Ryan G. Lim, Jennifer Stocksdale, Malcolm Casale, Terri G. Thompson, Jie Wu, Leslie M. Thompson, Victoria Dardov, Vidya Venkatraman, Andrea Matlock, Jennifer E. Van Eyk, Jacob D. Jaffe, Malvina Papanastasiou, Aravind Subramanian, Todd R. Golub, Sean D. Erickson, Mohammad Fallahi‐Sichani, Marc Hafner, Nathanael S. Gray, Jia‐Ren Lin, Caitlin E. Mills, Jeremy L. Muhlich, Mario Niepel, Caroline E. Shamu, Elizabeth H. Williams, David M. Wrobel, Peter K. Sorger, Laura M. Heiser, Joe W. Gray, James E. Korkola, Gordon B. Mills, Mark A. LaBarge, Heidi S. Feiler, Mark Dane, Elmar Bucher, Michel Nederlof, Damir Sudar, Sean M. Gross and 7 more - Cell Systems 2017 cited by 449
- LM-GVP: an extensible sequence and structure informed deep learning framework for protein property prediction
Authors: Zichen Wang, Steven A. Combs, Ryan Brand, Miguel Romero Calvo, Panpan Xu, George Price, Nataliya Golovach, Emmanuel Oluwatobi Salawu, Colby J. Wise, Sri Priya Ponnapalli, Peter Clark - Scientific Reports 2022 cited by 89
- DiffusionPDE: Generative PDE-Solving Under Partial Observation
Authors: Jiahe Huang, Guandao Yang, Zichen Wang, Jeong Joon Park - Advances in Neural Information Processing Systems 37, NeurIPS 2024 cited by 119
- Reinforcement-Learning-Assisted Multi-UAV Task Allocation and Path Planning for IIoT
Authors: Guodong Zhao, Ye Wang, Tong Mu, Zhijun Meng, Zichen Wang - IEEE Internet of Things Journal, IEEE Internet Things J. 2024 cited by 47
- L1000CDS2: LINCS L1000 characteristic direction signatures search engine
Authors: Qiaonan Duan, St. Patrick Reid, Neil R. Clark, Zichen Wang, Nicolas Fernandez, Andrew D. Rouillard, Ben Readhead, Sarah R. Tritsch, Rachel Hodos, Marc Hafner, Mario Niepel, Peter K. Sorger, Joel T. Dudley, Sina Bavari, Rekha G. Panchal, Avi Ma’ayan - npj Systems Biology and Applications 2016 cited by 384
- Mesenchymal stem cells and macrophages and their interactions in tendon-bone healing
Authors: Zhuo Chen, Mingchao Jin, Hongyi He, Jiabao Dong, Jing Li, Jiangbo Nie, Zichen Wang, Juntao Xu, Fengfeng Wu - Journal of Orthopaedic Translation 2023 cited by 108
- Differential cytokine contributions of perivascular haematopoietic stem cell niches
Authors: Noboru Asada, Yuya Kunisaki, Halley Pierce, Zichen Wang, Nicolas Fernandez, Alexander Birbrair, Avi Ma’ayan, Paul S. Frenette - Nature Cell Biology 2017 cited by 424
- Enzyme hybrid nanoflowers and enzyme@metal–organic frameworks composites: fascinating hybrid nanobiocatalysts
Authors: Zichen Wang, Ruirui Wang, Zixin Geng, Xiuyan Luo, Jiahui Jia, Saizhao Pang, Xian‐Wei Fan, Muhammad Bilal, Jiandong Cui - Critical Reviews in Biotechnology 2023 cited by 90
- Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration
Authors: Melanie von Schimmelmann, Philip A. Feinberg, Josefa M. Sullivan, Stacy M. Ku, Ana Badimon, Mary Kaye Duff, Zichen Wang, Alexander Lachmann, Scott Dewell, Avi Ma’ayan, Ming‐Hu Han, Alexander Tarakhovsky, Anne Schaefer - Nature Neuroscience 2016 cited by 240
- Improving preeclampsia risk prediction by modeling pregnancy trajectories from routinely collected electronic medical record data
Authors: Shilong Li, Zichen Wang, Luciana Vieira, Amanda B. Zheutlin, Boshu Ru, Emilio Schadt, Pei Wang, Alan B. Copperman, James L. Stone, Susan J. Gross, Yu-Han Kao, Yan Kwan Lau, Siobhan M. Dolan, Eric E. Schadt, Li Li, Eric E. Schadt, Li Li - npj Digital Medicine, npj Digit. Medicine 2022 cited by 76
- Graph Neural Prompting with Large Language Models
Authors: Yijun Tian, Huan Song, Zichen Wang, Haozhu Wang, Ziqing Hu, Fang Wang, Nitesh V. Chawla, Panpan Xu - AAAI Conference on Artificial Intelligence 2024 cited by 56
- High resolution histopathology image generation and segmentation through adversarial training
Authors: Wenyuan Li, Jiayun Li, Jennifer Polson, Zichen Wang, William Speier, Corey W. Arnold - Medical Image Analysis, Medical Image Anal. 2021 cited by 53
- Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
Authors: Zichen Wang, Caroline D. Monteiro, Kathleen M. Jagodnik, Nicolas Fernandez, Gregory W. Gundersen, Andrew D. Rouillard, Sherry L. Jenkins, Axel S. Feldmann, Kevin Hu, Michael G. McDermott, Qiaonan Duan, Neil R. Clark, Matthew R. Jones, Yan Kou, Troy Goff, Holly Woodland, Fabio M. R. Amaral, Gregory L. Szeto, Oliver Fuchs, Sophia Miryam Schüssler‐Fiorenza Rose, Shvetank Sharma, Uwe Schwartz, Xabier Bengoetxea Bausela, Maciej Szymkiewicz, Vasileios Maroulis, Anton Salykin, Carolina Barra, Candice D. Kruth, Nicholas J. Bongio, Vaibhav Mathur, Radmila D Todoric, Udi Rubin, Apostolos Malatras, Carl T. Fulp, John A. Galindo, Ruta Motiejunaite, Christoph Jüschke, Philip C. Dishuck, Katharina Lahl, Mohieddin Jafari, Sara Aibar, Apostolos Zaravinos, Linda H. Steenhuizen, Lindsey R. Allison, Pablo Gamallo, Fernando de Andrés, Tyler Dae Devlin, Vicente Pérez-García, Avi Ma’ayan - Nature Communications 2016 cited by 299
- Toward heterogeneous information fusion: bipartite graph convolutional networks for in silico drug repurposing
Authors: Zichen Wang, Mu Zhou, Corey Arnold - Bioinformatics, Bioinform. 2020 cited by 92
- Soft Sensor of the Key Effluent Index in the Municipal Wastewater Treatment Process Based on Transformer
Authors: Chang Peng, S. Zhang, Zichen Wang - IEEE Transactions on Industrial Informatics, IEEE Trans. Ind. Informatics 2023 cited by 43
