Benjamin P. Berman
1994–2024 年に発表
- 73
- 論文数
- 23,858
- 被引用数
- 51
- h 指数
- 68
- i10 指数
被引用数
引用元
国・地域
機関
- Harvard University0.9%
- Howard Hughes Medical Institute0.7%
- Heidelberg University0.6%
- University of Cambridge0.5%
- Stanford University0.5%
- Broad Institute0.5%
- その他96.3%
分野
- Biochemistry, Genetics and Molecular Biology60.7%
- Medicine19%
- Neuroscience4.6%
- Computer Science4.3%
- Immunology and Microbiology3.6%
- Agricultural and Biological Sciences3.6%
- その他4.2%
トピック
- Epigenetics and DNA Methylation6.3%
- Genomics and Chromatin Dynamics4.9%
- Cancer Genomics and Diagnostics4.5%
- RNA modifications and cancer3.2%
- Genomics and Phylogenetic Studies2.6%
- Glioma Diagnosis and Treatment2.3%
- その他76.2%
共著者
- Tiago C. Silva12
- De‐Chen Lin11
- H. Phillip Koeffler11
- Peter W. Laird9
- Anand Mayakonda7
- Ling‐Wen Ding7
- Peggy Farnham6
- S Celniker6
- Simon A. Gayther6
- Simon G. Coetzee6
- Yan‐Yi Jiang6
- Dennis J. Hazelett5
- En‐Min Li5
- Gerald M. Rubin5
- Houtan Noushmehr5
- Hui Shen5
- Huy Q. Dinh5
- Jasmine Plummer5
- Lijing Yao5
- Li‐Yan Xu5
- Rehan Akbani5
- A. Gordon Robertson4
- Gerhard A. Coetzee4
- Ina Felau4
全論文
- Pan-cancer analysis of whole genomes
著者: Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung-Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy, Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John G. Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Timothy A. Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke K. Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos, Samantha Bersani, Johanna Bertl, Miguel Betancourt, Vinayak Bhandari, Shriram G. Bhosle, Andrew V. Biankin, Matthias Bieg, Darell D. Bigner, Hans Binder, Ewan Birney, Michael J. Birrer, Nidhan K. Biswas, Bodil Bjerkehagen, Tom Bodenheimer, Lori Boice, Giada Bonizzato, Johann S. de Bono ほか 1,224 名 - Nature 2020 被引用: 3,335
- The chromatin accessibility landscape of primary human cancers
著者: M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, The Cancer Genome Atlas Analysis Network, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, Michael K. A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Zhining Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Yang Zhao, Jingchun Zhu - Science 2018 被引用: 1,356
- Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma
著者: Jonathan D. Buckley, Li Ding, Fei Pan, Leslie Cope, Christopher E. Pelloski, Kristin Diefes, Katherine A. Hoadley, Benjamin P. Berman, Stephen B. Baylin, Peter W. Laird, Hui Shen, Kanan Pujara, Roel G.W. Verhaak, Henrik Bengtsson, Daniel J. Weisenberger, David Van Den Berg, Heather K. Schmidt, Krishna Bhat, Charles M. Perou, D Neil Hayes, Richard K. Wilson, James G. Herman, Houtan Noushmehr, Erik P. Sulman, Kenneth Aldape, Pierre Neuvial, Heidi Phillips - Cancer Cell 2010 被引用: 2,358
- Comprehensive molecular characterization of mitochondrial genomes in human cancers
著者: Yuan Yuan, Young Seok Ju, Young-Wook Kim, Jun Li, Yumeng Wang, Sung-Soo Yoon, Yang Yang, Iñigo Martincorena, Chad J. Creighton, John N. Weinstein, Yanxun Xu, Leng Han, Hyung‐Lae Kim, Hidewaki Nakagawa, Keunchil Park, Peter J. Campbell, Han Liang, Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung-Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy, Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Timothy A. Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos ほか 1,241 名 - Nature Genetics 2020 被引用: 515
- The Genome Sequence of Drosophila melanogaster
著者: Mark D. Adams, S Celniker, Robert A. Holt, Cheryl Evans, Jeannine D. Gocayne, Peter G. Amanatides, Steven E. Scherer, Peter W. Li, Roger A. Hoskins, Richard F. Galle, Reed George, Suzanna Lewis, Stephen M. Richards, Michael Ashburner, Scott N. Henderson, Granger G. Sutton, Jennifer R. Wortman, Mark Yandell, Qing Zhang, Lin X. Chen, Rhonda Brandon, Yu-Hui C. Rogers, Robert G. Blazej, Mark Champe, Barret D. Pfeiffer, Kenneth H. Wan, Clare Doyle, Evan G. Baxter, Gregg Helt, Catherine R. Nelson, George L. Gabor, Miklós, Josep F. Abril, Anna Agbayani, Hui-Jin An, Cynthia Andrews‐Pfannkoch, Danita Baldwin, Richard M. Ballew, Anand Basu, James Baxendale, Leyla Bayraktaroglu, Ellen M. Beasley, Karen Beeson, Panayiotis V. Benos, Benjamin P. Berman, Deepali Bhandari, Slava Bolshakov, Dana Borkova, Michael R. Botchan, John Bouck, Peter Brokstein, Phillipe Brottier, Kenneth C. Burtis, Dana Busam, H. Butler, Édouard Cadieu, Ishwar Chandra, J. Michael Cherry, Simon Cawley, Carl Dahlke, Lionel B. Davenport, Peter L. Davies, Beatriz de Pablos, Arthur L. Delcher, Zuoming Deng, Anne Deslattes Mays, Ian Dew, Suzanne M. Dietz, Kristina Dodson, Lisa Doup, Michael Downes, Shannon Dugan-Rocha, Boris C. Dunkov, Patrick Dunn, Kenneth J. Durbin, Carlos Evangelista, Concepción Ferraz, Steven Ferriera, Wolfgang Fleischmann, Carl Fosler, Andrei Gabrielian, Neha Garg, William M Gelbart, Ken Glasser, Anna Glodek, Fangcheng Gong, James H. Gorrell, Zhiping Gu, Ping Guan, Michael A. Harris, Nomi L. Harris, Damon A. Harvey, Thomas J. Heiman, Judith Hernandez, Jarrett Houck, Damon Hostin, Kathryn A. Houston, Timothy J. Howland, Ming-Hui Wei, Chinyere Ibegwam ほか 95 名 - Science 2000 被引用: 6,042
- DNA methylation loss in late-replicating domains is linked to mitotic cell division
著者: Wanding Zhou, Huy Q. Dinh, Zachary Ramjan, Daniel J. Weisenberger, Charles M. Nicolet, Hui Shen, Peter W. Laird, Benjamin P. Berman - Nature Genetics 2018 被引用: 452
- Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes
著者: Alberto Yáñez, Simon G. Coetzee, André Olsson, David E. Muench, Benjamin P. Berman, Dennis J. Hazelett, Nathan Salomonis, H. Leighton Grimes, Helen S. Goodridge - Immunity 2017 被引用: 477
- Exosomal MicroRNA Transfer Into Macrophages Mediates Cellular Postconditioning
著者: Geoffrey de Couto, Romain Gallet, Linda Cambier, Ervin Jaghatspanyan, Nupur Makkar, James Dawkins, Benjamin P. Berman, Eduardo Marbán - Circulation 2017 被引用: 353
- The PsychENCODE project
著者: Schahram Akbarian, Chunyu Liu, James A. Knowles, Flora M. Vaccarino, Peggy Farnham, Gregory E. Crawford, Andrew E. Jaffe, Dalila Pinto, Stella Dracheva, Daniel H. Geschwind, Jonathan Mill, Angus C. Nairn, Alexej Abyzov, Sirisha Pochareddy, Shyam Prabhakar, Sherman M. Weissman, Patrick F. Sullivan, Matthew W. State, Zhiping Weng, Mette A. Peters, Kevin P. White, Mark Gerstein, Anahita Amiri, Chris Armoskus, Allison E. Ashley‐Koch, Taejeong Bae, Andrea Beckel‐Mitchener, Benjamin P. Berman, Gerhard A. Coetzee, Gianfilippo Coppola, Nancy Francoeur, Menachem Fromer, Robert Gao, Kay Grennan, Jennifer Herstein, David H. Kavanagh, Nikolay A. Ivanov, Yan Jiang, Robert R. Kitchen, Alexey Kozlenkov, Marija Kundaković, Mingfeng Li, Zhen Li, Shuang Liu, Lara M. Mangravite, Eugenio Mattei, Eirene Markenscoff-Papadimitriou, Fábio C. P. Navarro, Nicole North, Larsson Omberg, David M. Panchision, Neelroop Parikshak, Jérémie Poschmann, Amanda J. Price, Michael Purcaro, Timothy E. Reddy, Panos Roussos, Shannon Schreiner, Soraya Scuderi, Robert Sebra, Mikihito Shibata, Annie W. Shieh, Mario Škarica, Wenjie Sun, Vivek Swarup, Amber Thomas, Junko Tsuji, Harm van Bakel, Daifeng Wang, Yongjun Wang, Kai Wang, Donna M. Werling, A. Jeremy Willsey, Heather Witt, Hyejung Won, Chloe C. Y. Wong, Gregory A. Wray, Emily Wu, Xuming Xu, Lijing Yao, Geetha Senthil, Thomas Lehner, Pamela Sklar, Nenad Šestan - Nature Neuroscience 2015 被引用: 488
- Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing
著者: Efrat Katsman, Shari Orlanski, Filippo Martignano, Ilana Fox-Fisher, Ruth Shemer, Yuval Dor, Aviad Zick, Amir Eden, Iacopo Petrini, Silvestro G. Conticello, Benjamin P. Berman - Genome biology 2022 被引用: 118
- Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
著者: Theresa K. Kelly, Yaping Liu, Fides D. Lay, Gangning Liang, Benjamin P. Berman, Peter A. Jones - Genome Research 2012 被引用: 481
- Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
著者: Benjamin P. Berman, Daniel J. Weisenberger, Joseph F Aman, Toshinori Hinoue, Zachary Ramjan, Yaping Liu, Houtan Noushmehr, Christopher P.E. Lange, Cornelis M. van Dijk, Rob A.�E.�M. Tollenaar, David Van Den Berg, Peter W. Laird - Nature Genetics 2011 被引用: 690
- Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression
著者: Yuan Jiang, Yan‐Yi Jiang, Jian‐Jun Xie, Anand Mayakonda, Masaharu Hazawa, Li Chen, Jin-Fen Xiao, Chunquan Li, Jin-Fen Xiao, Ling‐Wen Ding, Qiao‐Yang Sun, Liang Xu, Deepika Kanojia, Maya Jeitany, Jianwen Deng, Lian‐Di Liao, Harmik J. Soukiasian, Benjamin P. Berman, Jia‐Jie Hao, Li‐Yan Xu, En‐Min Li, Ming‐Rong Wang, Xingang Bi, De‐Chen Lin, H. Phillip Koeffler, De‐Chen Lin, H. Phillip Koeffler - Nature Communications 2018 被引用: 239
- Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons’ Data
著者: Galen F. Gao, Joel S. Parker, Sheila M. Reynolds, Tiago C. Silva, Liang-Bo Wang, Wanding Zhou, Rehan Akbani, Matthew H. Bailey, Saianand Balu, Benjamin P. Berman, Denise Brooks, Hu Chen, Andrew D. Cherniack, John A. Demchok, Li Ding, Ina Felau, Sharon Gaheen, Daniela S. Gerhard, David I. Heiman, Kyle M. Hernandez, Katherine A. Hoadley, Reyka G. Jayasinghe, Anab Kemal, Theo Knijnenburg, Peter W. Laird, Michael K.A. Mensah, Andrew J. Mungall, A. Gordon Robertson, Hui Shen, Roy Tarnuzzer, Zhining Wang, Matthew A. Wyczalkowski, Liming Yang, Jean C. Zenklusen, Zhenyu Zhang, Han Liang, Michael S. Noble - Cell Systems 2019 被引用: 199
- Global analysis of patterns of gene expression during Drosophilaembryogenesis
著者: Pavel Tomančák, Benjamin P. Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, S Celniker, Gerald M. Rubin - Genome biology 2007 被引用: 486
- Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma
著者: Jia‐Jie Hao, De‐Chen Lin, Huy Q. Dinh, Anand Mayakonda, Yan‐Yi Jiang, Chang Chen, Ye Jiang, Chenchen Lü, Zhi‐Zhou Shi, Xin Xu, Yu Zhang, Yan Cai, Jinwu Wang, Qimin Zhan, Wenqiang Wei, Benjamin P. Berman, Ming‐Rong Wang, H. Phillip Koeffler - Nature Genetics 2016 被引用: 281
- Divergent mutational processes distinguish hypoxic and normoxic tumours
著者: Vinayak Bhandari, Constance H. Li, Robert G. Bristow, Paul C. Boutros, Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung-Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy, Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John M.S. Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Tim Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos, Samantha Bersani, Johanna Bertl, Miguel Betancourt, Vinayak Bhandari, Shriram G. Bhosle, Andrew V. Biankin, Matthias Bieg, Darell D. Bigner, Hans Binder, Ewan Birney, Michael J. Birrer, Nidhan K. Biswas, Bodil Bjerkehagen ほか 1,228 名 - Nature Communications 2020 被引用: 142
- ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles
著者: Tiago Chedraoui Silva, Simon G. Coetzee, Nicole Gull, Lijing Yao, Dennis J. Hazelett, Houtan Noushmehr, De-Chen Lin, Benjamin P. Berman - Bioinformatics, Bioinform. 2017 被引用: 162
- Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma
著者: De‐Chen Lin, Anand Mayakonda, Huy Q. Dinh, Pinbo Huang, Lehang Lin, Xiaoping Liu, Ling‐Wen Ding, Jie Wang, Benjamin P. Berman, Erwei Song, Dong Yin, H. Phillip Koeffler - Cancer Research 2017 被引用: 242
- Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
著者: Yaping Liu, Kimberly D. Siegmund, Peter W. Laird, Benjamin P. Berman - Genome biology 2012 被引用: 305
- BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
著者: Wanding Zhou, Benjamin K. Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman, Ayush Semwal, Walid Abi Habib, Lyong Heo, Peter W. Laird, Benjamin P. Berman, Timothy J. Triche, Hui Shen - Nucleic Acids Research 2024 被引用: 44
- Inferring regulatory element landscapes and transcription factor networks from cancer methylomes
著者: Lijing Yao, Hui Shen, Peter W. Laird, Peggy Farnham, Benjamin P. Berman - Genome Biology 2015 被引用: 219
- Targetable BET proteins- and E2F1-dependent transcriptional program maintains the malignancy of glioblastoma
著者: Liang Xu, Ye Chen, Anand Mayakonda, Lynnette Koh, Yuk Kien Chong, Dennis L. Buckley, Edwin Sandanaraj, See Wee Lim, Ruby Yu‐Tong Lin, Xinyu Ke, Mo-Li Huang, Jianxiang Chen, Wendi Sun, Lingzhi Wang, Boon Cher Goh, Huy Q. Dinh, Dennis Kappei, Georg E. Winter, Ling‐Wen Ding, Beng Ti Ang, Benjamin P. Berman, James E. Bradner, Carol Tang, H. Phillip Koeffler - National Academy of Sciences, Proceedings of the National Academy of Sciences 2018 被引用: 122
- The role of DNA methylation in directing the functional organization of the cancer epigenome
著者: Fides D. Lay, Yaping Liu, Theresa K. Kelly, Heather Witt, Peggy Farnham, Peter A. Jones, Benjamin P. Berman - Genome Research 2015 被引用: 127
