William J. Greenleaf
1998–2025 年に発表
- 151
- 論文数
- 47,089
- 被引用数
- 84
- h 指数
- 142
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology64.8%
- Medicine17.1%
- Immunology and Microbiology9.2%
- Agricultural and Biological Sciences2.4%
- Neuroscience2.4%
- Engineering1.3%
- その他2.8%
トピック
- Genomics and Chromatin Dynamics7.4%
- Single-cell and spatial transcriptomics6.2%
- Epigenetics and DNA Methylation4.6%
- RNA Research and Splicing3.6%
- CRISPR and Genetic Engineering3%
- RNA modifications and cancer3%
- その他72.2%
共著者
- Howard Y. Chang38
- Anshul Kundaje26
- Jason D. Buenrostro18
- M. Ryan Corces18
- Jeffrey M. Granja15
- M Snyder15
- Winston R. Becker14
- Arwa S. Kathiria13
- Georgi K. Marinov13
- Ansuman T. Satpathy12
- Maxwell R. Mumbach12
- Beijing Wu10
- Sarah K. Denny10
- Adam J. Rubin9
- Benjamin Parks9
- Paul A. Khavari9
- Steven M. Block9
- Emil Marklund8
- Alicia N. Schep7
- Christina Curtis7
- Daniel Herschlag7
- Evan A. Boyle7
- Sandy Klemm7
- Sarah E. Pierce7
全論文
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
著者: Jason D. Buenrostro, Paul G. Giresi, Lisa C. Zaba, Howard Y. Chang, William J. Greenleaf - Nature Methods 2013 被引用: 7,027
- An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
著者: M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton Greenside, Nicholas A. Sinnott‐Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa S. Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang - Nature Methods 2017 被引用: 2,756
- ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide
著者: Jason D. Buenrostro, Beijing Wu, Howard Y. Chang, William J. Greenleaf - Current Protocols in Molecular Biology 2015 被引用: 3,637
- ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
著者: Jeffrey M. Granja, M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang, William J. Greenleaf - Nature Genetics 2021 被引用: 1,462
- chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
著者: Alicia N. Schep, Beijing Wu, Jason D. Buenrostro, William J. Greenleaf - Nature Methods 2017 被引用: 1,860
- Single-cell chromatin accessibility reveals principles of regulatory variation
著者: Jason D. Buenrostro, Beijing Wu, Ulrike Litzenburger, Dave Ruff, Michael L. Gonzales, M Snyder, Howard Y. Chang, William J. Greenleaf - Nature 2015 被引用: 2,554
- Chromatin accessibility and the regulatory epigenome
著者: Sandy Klemm, Zohar Shipony, William J. Greenleaf - Nature Reviews Genetics 2019 被引用: 1,959
- The chromatin accessibility landscape of primary human cancers
著者: M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, The Cancer Genome Atlas Analysis Network, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, Michael K. A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Zhining Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Yang Zhao, Jingchun Zhu - Science 2018 被引用: 1,356
- PD-1 combination therapy with IL-2 modifies CD8+ T cell exhaustion program
著者: Masao Hashimoto, Koichi Araki, Maria A. Cardenas, Peng Li, Rohit R. Jadhav, Haydn Kissick, William Henry Hudson, Donald J. McGuire, Rebecca C. Obeng, Andreas Wieland, Judong Lee, Daniel T. McManus, James Ross, Se Jin Im, Junghwa Lee, Jian‐Xin Lin, Bin Hu, Erin E. West, Christopher D. Scharer, Gordon J. Freeman, Arlene H. Sharpe, Suresh S. Ramalingam, Alex Pellerin, Volker Teichgräber, William J. Greenleaf, Christian Klein, Jörg J. Goronzy, Pablo Umaña, Warren J. Leonard, Kendall A. Smith, Rafi Ahmed - Nature 2022 被引用: 321
- The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
著者: Writing Group, M Snyder, Shin Lin, Amanda L. Posgai, Mark A. Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt–Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar‐Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Caltech-UW TMC, Long Cai, Jay Shendure, Cole Trapnell, Shin Lin, Dana L. Jackson, Stanford-WashU TMC, Michael P. Snyder, Garry P. Nolan, William J. Greenleaf, Yiing Lin, Sylvia K. Plevritis, Sara Ahadi, Stephanie Nevins, Hayan Lee, Christian Schuerch, Sarah Black, Vishal G. Venkataraaman, Edward D. Esplin, Aaron Horning, Amir Bahmani, UCSD TMC, Kun Zhang, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Mark A. Atkinson, Bernd Bodenmiller, Todd M. Brusko, Michael Clare‐Salzler, Harry S. Nick, Kevin J. Otto, Amanda L. Posgai, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond C. Harris, Mark deCaestecker, Agnes B. Fogo, Raf Van de Plas, Ken S. Lau, Long Cai, Guo‐Cheng Yuan, Qian Zhu, Ruben Dries, Harvard TTD, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Purdue TTD, Julia Laskin, DongHye Ye, Kristin Burnum-Johnson, Paul Piehowski, Charles Ansong, Ying Zhu, Stanford TTD, Pehr Harbury, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Ziv Bar‐Joseph ほか 58 名 - Nature, Nat. 2019 被引用: 687
- Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer
著者: Winston R. Becker, Stephanie Nevins, Derek C. Chen, Roxanne Chiu, Aaron M. Horning, Tuhin K. Guha, Rozelle Laquindanum, Meredith Mills, Hassan Chaı̈b, Uri Ladabaum, Teri A. Longacre, Jeanne Shen, Edward D. Esplin, Anshul Kundaje, James M. Ford, Christina Curtis, M Snyder, William J. Greenleaf - Nature Genetics 2022 被引用: 326
- Organization of the human intestine at single-cell resolution
著者: John W. Hickey, Winston R. Becker, Stephanie Nevins, Aaron M. Horning, Almudena Espín Pérez, Chenchen Zhu, Bokai Zhu, Bei Wei, Roxanne Chiu, Derek C. Chen, Daniel L. Cotter, Edward D. Esplin, Annika K. Weimer, Chiara Caraccio, Vishal G. Venkataraaman, Christian M. Schürch, Sarah Black, Maria Brbić, Kaidi Cao, Shuxiao Chen, Weiruo Zhang, Emma Monte, Nancy R. Zhang, Zongming Ma, Jure Leskovec, Zhengyan Zhang, Shin Lin, Teri A. Longacre, Sylvia K. Plevritis, Yiing Lin, Garry P. Nolan, William J. Greenleaf, M Snyder - Nature 2023 被引用: 308
- Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
著者: M. Ryan Corces, Jason D. Buenrostro, Beijing Wu, Peyton Greenside, Steven M. Chan, Julie L. Koenig, M Snyder, Jonathan K. Pritchard, Anshul Kundaje, William J. Greenleaf, Ravindra Majeti, Howard Y. Chang - Nature Genetics 2016 被引用: 1,292
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
著者: Maxwell R. Mumbach, Adam J. Rubin, Ryan A Flynn, Chao Dai, Paul A. Khavari, William J. Greenleaf, Howard Y. Chang - Nature Methods 2016 被引用: 1,254
- Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
著者: Jeffrey M. Granja, Sandy Klemm, Lisa McGinnis, Arwa S. Kathiria, Anja Mezger, M. Ryan Corces, Benjamin Parks, Eric J. Gars, Michaela Liedtke, Grace Zheng, Howard Y. Chang, Ravindra Majeti, William J. Greenleaf - Nature Biotechnology 2019 被引用: 566
- Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
著者: M. Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J. Gloudemans, Laure Frésard, Jeffrey M. Granja, Bryan H. Louie, Tiffany Eulalio, Shadi Shams, S. Tansu Bagdatli, Maxwell R. Mumbach, Boxiang Liu, Kathleen S. Montine, William J. Greenleaf, Anshul Kundaje, Stephen B. Montgomery, Howard Y. Chang, Thomas J. Montine - Nature Genetics 2020 被引用: 384
- Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
著者: Jason D. Buenrostro, M. Ryan Corces, Caleb A. Lareau, Beijing Wu, Alicia N. Schep, Martin J. Aryee, Ravindra Majeti, Howard Y. Chang, William J. Greenleaf - Cell 2018 被引用: 778
- Short tandem repeats bind transcription factors to tune eukaryotic gene expression
著者: Connor A. Horton, Amr M. Alexandari, Michael G.B. Hayes, Emil Marklund, Julia M. Schaepe, Arjun K. Aditham, Nilay Shah, Peter Suzuki, Avanti Shrikumar, Ariel Afek, William J. Greenleaf, Raluca Gordân, Julia Zeitlinger, Anshul Kundaje, Polly M. Fordyce - Science 2023 被引用: 194
- Origin and differentiation of human memory CD8 T cells after vaccination
著者: Rama Akondy, Mark Fitch, Srilatha Edupuganti, Shu Yang, Haydn Kissick, Kelvin W. Li, Ben Youngblood, Hossam A. Abdelsamed, Donald J. McGuire, Kristen W. Cohen, Gabriela Alexe, Shashi Nagar, Megan McCausland, Gupta Sk, Pramila Tata, W. Nicholas Haining, M. Juliana McElrath, David Zhang, Bin Hu, William J. Greenleaf, Jörg J. Goronzy, Mark J. Mulligan, Marc K. Hellerstein, Rafi Ahmed - Nature 2017 被引用: 533
- Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks
著者: Adam J. Rubin, Kevin R. Parker, Ansuman T. Satpathy, Yanyan Qi, Beijing Wu, Alvin J. Ong, Maxwell R. Mumbach, Andrew L. Ji, Daniel Sunwook Kim, Seung Woo Cho, Brian Zarnegar, William J. Greenleaf, Howard Y. Chang, Paul A. Khavari - Cell 2018 被引用: 328
- An encyclopedia of enhancer-gene regulatory interactions in the human genome
著者: Andreas R. Gschwind, Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda, Ramil Nurtdinov, Xi Wang, Anthony S. Tan, H. Spencer Jones, X. Rosa, David Yao, Joseph Nasser, Žiga Avsec, Benjamin T. James, Muhammad S. Shamim, Neva C. Durand, Suhas S.P. Rao, Ragini Mahajan, Benjamin R. Doughty, Kalina Andreeva, Jacob C. Ulirsch, Kaili Fan, Elizabeth M. Perez, Tri C. Nguyen, David R. Kelley, Hilary K. Finucane, Jill E. Moore, Zhiping Weng, Manolis Kellis, Michael C. Bassik, Alkes L. Price, M Beer, Roderic Guigó, J Stamatoyannopoulos, Erez Lieberman Aiden, William J. Greenleaf, Christina S. Leslie, Lars M. Steinmetz, Anshul Kundaje, J Engreitz - 2023 被引用: 120
- Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens
著者: David W. Morgens, Michael Wainberg, Evan A. Boyle, Oana Ursu, Carlos L. Araya, C. Kimberly Tsui, Michael S. Haney, Gaelen T. Hess, Kyuho Han, Edwin E. Jeng, Amy Li, M Snyder, William J. Greenleaf, Anshul Kundaje, Michael C. Bassik - Nature Communications 2017 被引用: 402
- Integration of spatial and single-cell data across modalities with weakly linked features
著者: Shuxiao Chen, Bokai Zhu, Sijia Huang, John W. Hickey, Kevin Lin, M Snyder, William J. Greenleaf, Garry P. Nolan, Nancy R. Zhang, Zongming Ma - Nature Biotechnology 2023 被引用: 102
- Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH
著者: King L. Hung, Jens Luebeck, Siavash R. Dehkordi, Caterina I. Colón, Rui Li, Ivy Tsz-Lo Wong, Ceyda Çoruh, Prashanthi Dharanipragada, Shirley H. Lomeli, Natasha E. Weiser, Gatien Moriceau, Xiao Zhang, Chris Bailey, Kathleen E. Houlahan, Wenting Yang, Rocío Chamorro González, Charles Swanton, Christina Curtis, Mariam Jamal‐Hanjani, Anton G. Henssen, Julie A. Law, William J. Greenleaf, Roger S. Lo, Paul S. Mischel, Vineet Bafna, Howard Y. Chang - Nature Genetics 2022 被引用: 123
