M. Ryan Corces
2010–2025 年に発表
- 55
- 論文数
- 18,828
- 被引用数
- 39
- h 指数
- 52
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology63.7%
- Medicine24.1%
- Immunology and Microbiology6.6%
- Neuroscience2.7%
- Agricultural and Biological Sciences1.4%
- Engineering0.4%
- その他1.1%
トピック
- Single-cell and spatial transcriptomics6.4%
- Genomics and Chromatin Dynamics6.3%
- Epigenetics and DNA Methylation5.6%
- Cancer-related molecular mechanisms research4.9%
- RNA modifications and cancer4.3%
- Acute Myeloid Leukemia Research4.3%
- その他68.2%
共著者
- Howard Y. Chang28
- Jeffrey M. Granja18
- William J. Greenleaf17
- Ravindra Majeti16
- Ansuman T. Satpathy8
- Kathryn E. Yost7
- Maxwell R. Mumbach7
- Thomas J. Montine7
- Rui Li6
- S. Tansu Bagdatli6
- Hani Choudhry5
- Sarah E. Pierce5
- Shadi Shams5
- Adam J. Rubin4
- Andreas Reinisch4
- Anshul Kundaje4
- Beijing Wu4
- Bryan H. Louie4
- Danièl Thomas4
- Jason D. Buenrostro4
- Katerina Kraft4
- Kathleen S. Montine4
- Paul A. Khavari4
- Ryan A. Flynn4
全論文
- An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
著者: M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton Greenside, Nicholas A. Sinnott‐Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa S. Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang - Nature Methods 2017 被引用: 2,756
- ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
著者: Jeffrey M. Granja, M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang, William J. Greenleaf - Nature Genetics 2021 被引用: 1,462
- The chromatin accessibility landscape of primary human cancers
著者: M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, The Cancer Genome Atlas Analysis Network, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, Michael K. A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Zhining Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Yang Zhao, Jingchun Zhu - Science 2018 被引用: 1,356
- Chromatin accessibility profiling by ATAC-seq
著者: Fiorella C. Grandi, Hailey Modi, Lucas Kampman, M. Ryan Corces - Nature Protocols 2022 被引用: 556
- Circular ecDNA promotes accessible chromatin and high oncogene expression
著者: Sihan Wu, Kristen M. Turner, Nam Nguyen, Ramya Raviram, Marcella L. Erb, Jennifer Santini, Jens Luebeck, Utkrisht Rajkumar, Yarui Diao, Bin Li, Wenjing Zhang, Nathan M. Jameson, M. Ryan Corces, Jeffrey M. Granja, Xingqi Chen, Ceyda Çoruh, Armen Abnousi, Jack Houston, Zhen Ye, Rong Hu, Miao Yu, Hoon Kim, Julie A. Law, Roel G.W. Verhaak, Ming Hu, Frank B. Furnari, Howard Y. Chang, Bing Ren, Vineet Bafna, Paul S. Mischel - Nature 2019 被引用: 721
- Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
著者: M. Ryan Corces, Jason D. Buenrostro, Beijing Wu, Peyton Greenside, Steven M. Chan, Julie L. Koenig, M Snyder, Jonathan K. Pritchard, Anshul Kundaje, William J. Greenleaf, Ravindra Majeti, Howard Y. Chang - Nature Genetics 2016 被引用: 1,292
- Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
著者: Jeffrey M. Granja, Sandy Klemm, Lisa McGinnis, Arwa S. Kathiria, Anja Mezger, M. Ryan Corces, Benjamin Parks, Eric J. Gars, Michaela Liedtke, Grace Zheng, Howard Y. Chang, Ravindra Majeti, William J. Greenleaf - Nature Biotechnology 2019 被引用: 566
- Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
著者: M. Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J. Gloudemans, Laure Frésard, Jeffrey M. Granja, Bryan H. Louie, Tiffany Eulalio, Shadi Shams, S. Tansu Bagdatli, Maxwell R. Mumbach, Boxiang Liu, Kathleen S. Montine, William J. Greenleaf, Anshul Kundaje, Stephen B. Montgomery, Howard Y. Chang, Thomas J. Montine - Nature Genetics 2020 被引用: 384
- ecDNA hubs drive cooperative intermolecular oncogene expression
著者: King L. Hung, Kathryn E. Yost, Liangqi Xie, Quanming Shi, Konstantin Helmsauer, Jens Luebeck, Robert Schöpflin, Joshua T. Lange, Rocío Chamorro González, Natasha E. Weiser, Celine Chen, Maria E. Valieva, Ivy Tsz-Lo Wong, Sihan Wu, Siavash R. Dehkordi, Connor V. Duffy, Katerina Kraft, Jun Tang, Julia A. Belk, John C. Rose, M. Ryan Corces, Jeffrey M. Granja, Rui Li, Utkrisht Rajkumar, Jordan Friedlein, Anindya Bagchi, Ansuman T. Satpathy, Robert Tjian, Stefan Mundlos, Vineet Bafna, Anton G. Henssen, Paul S. Mischel, Zhe Liu, Howard Y. Chang - Nature 2021 被引用: 337
- A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
著者: Ke Wang, Yul W. Yang, Бо Лю, Amartya Sanyal, M. Ryan Corces, Yong Chen, Bryan R. Lajoie, Angeline Protacio, Ryan A. Flynn, Rajnish A. Gupta, Joanna Wysocka, Ming Lei, Job Dekker, Jill A. Helms, Howard Y. Chang - Nature 2011 被引用: 2,037
- Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
著者: Jason D. Buenrostro, M. Ryan Corces, Caleb A. Lareau, Beijing Wu, Alicia N. Schep, Martin J. Aryee, Ravindra Majeti, Howard Y. Chang, William J. Greenleaf - Cell 2018 被引用: 778
- Isocitrate dehydrogenase 1 and 2 mutations induce BCL-2 dependence in acute myeloid leukemia
著者: Steven M. Chan, Danièl Thomas, M. Ryan Corces, Seethu Xavy, Suchita Rastogi, Wan‐Jen Hong, Feifei Zhao, Bruno C. Medeiros, David A. Tyvoll, Ravindra Majeti - Nature Medicine 2015 被引用: 570
- Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
著者: Maxwell R. Mumbach, Ansuman T. Satpathy, Evan A. Boyle, Chao Dai, Benjamin G. Gowen, Seung Woo Cho, Michelle Nguyen, Adam J. Rubin, Jeffrey M. Granja, Katelynn R. Kazane, Yuning Wei, Trieu Nguyen, Peyton Greenside, M. Ryan Corces, Josh Tycko, Dimitre R. Simeonov, Nabeela Suliman, Rui Li, Jin Xu, Ryan A. Flynn, Anshul Kundaje, Paul A. Khavari, Alexander Marson, Jacob E. Corn, Thomas Quertermous, William J. Greenleaf, Howard Y. Chang - Nature Genetics 2017 被引用: 556
- Complement factor C1q mediates sleep spindle loss and epileptic spikes after mild brain injury
著者: Stephanie S. Holden, Fiorella C. Grandi, Oumaima Aboubakr, Bryan Higashikubo, Frances S. Cho, Andrew H. Chang, Alejandro Osorio-Forero, Allison R. Morningstar, Vidhu Mathur, Logan J. Kuhn, Poojan Suri, Sethu Sankaranarayanan, Yaisa Andrews‐Zwilling, Andrea J. Tenner, Anita Lüthi, Eleonora Aronica, M. Ryan Corces, Ted Yednock, Jeanne T. Paz - Science 2021 被引用: 130
- Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation
著者: Katerina Kraft, Kathryn E. Yost, Sedona E. Murphy, Andreas Magg, Yicheng Long, M. Ryan Corces, Jeffrey M. Granja, Lars Wittler, Stefan Mundlos, Thomas R. Cech, Alistair N. Boettiger, Howard Y. Chang - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 被引用: 109
- Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility
著者: Mandy Meijer, Eneritz Agirre, Mukund Kabbe, Cassandra A. van Tuijn, Abeer Heskol, Chao Zheng, Ana Mendanha Falcão, Marek Bartošovič, Leslie A. Kirby, Daniela Calini, Michael R. Johnson, M. Ryan Corces, Thomas J. Montine, Xingqi Chen, Howard Y. Chang, Dheeraj Malhotra, Gonçalo Castelo‐Branco - Neuron 2022 被引用: 100
- Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
著者: Ansuman T. Satpathy, Jeffrey M. Granja, Kathryn E. Yost, Yanyan Qi, Francesca Meschi, Geoffrey P. McDermott, Brett N. Olsen, Maxwell R. Mumbach, Sarah E. Pierce, M. Ryan Corces, Preyas Shah, Jason C. Bell, Darisha Jhutty, Corey M. Nemec, Jean Wang, Li Wang, Yifeng Yin, Paul G. Giresi, Anne Lynn S. Chang, Grace Zheng, William J. Greenleaf, Howard Y. Chang - Nature Biotechnology 2019 被引用: 1,060
- Clonal Evolution of Preleukemic Hematopoietic Stem Cells Precedes Human Acute Myeloid Leukemia
著者: Max Jan, Thomas M. Snyder, M. Ryan Corces, Paresh Vyas, Irving L. Weissman, Stephen R. Quake, Ravindra Majeti - Science Translational Medicine 2012 被引用: 719
- Preleukemic mutations in human acute myeloid leukemia affect epigenetic regulators and persist in remission
著者: M. Ryan Corces, Wan‐Jen Hong, Irving L. Weissman, Bruno C. Medeiros, Ravindra Majeti - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 被引用: 695
- Single-cell lineage tracing by endogenous mutations enriched in transposase accessible mitochondrial DNA
著者: Jin Xu, Kevin A. Nuno, Ulrike Litzenburger, Yanyan Qi, M. Ryan Corces, Ravindra Majeti, Howard Y. Chang - eLife 2019 被引用: 148
- LKB1 inactivation modulates chromatin accessibility to drive metastatic progression
著者: Sarah E. Pierce, Jeffrey M. Granja, M. Ryan Corces, Jennifer J. Brady, Min K. Tsai, Aubrey B. Pierce, Rui Tang, Pauline Chu, David M. Feldser, Howard Y. Chang, Michael C. Bassik, William J. Greenleaf, Monte M. Winslow - Nature Cell Biology 2021 被引用: 59
- Insulin Signaling and Dietary Restriction Differentially Influence the Decline of Learning and Memory with Age
著者: Amanda Kauffman, Jasmine M. Ashraf, M. Ryan Corces, J. Landis, Coleen T. Murphy - PLoS Biology 2010 被引用: 304
- Systematic benchmarking of single-cell ATAC-sequencing protocols
著者: Florian De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González‐Blas, Doménica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt–Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M. Duarte, Rojesh Shrestha, S. Tansu Bagdatli, M. Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B. Meyer, Ryan M. Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille L G Lambert, Marta Iglesias, Sebastián R. Najle, Zain Y. Dossani, Luciano G. Martelotto, Zach D. Burkett, Ronald Lebofsky, José I. Martín‐Subero, Satish K. Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A. Teichmann, Leif S. Ludwig, Theodore P. Braun, Andrew Adey, William J. Greenleaf, Jason D. Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn - Nature Biotechnology 2023 被引用: 51
- The Cell Type–Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2 -Mutant Preleukemia
著者: Yusuke Nakauchi, Armon Azizi, Daniel Thomas, M. Ryan Corces, Andreas Reinisch, Rajiv Sharma, David Cruz Hernandez, Thomas Köhnke, Daiki Karigane, Amy Fan, Daniel Martinez-Krams, Melissa Stafford, Satinder Kaur, Ritika Dutta, Paul Phan, Asiri Ediriwickrema, Erin McCarthy, Yuhong Ning, Tierney Phillips, Christopher K. Ellison, Gulfem D. Guler, Anna Bergamaschi, Chin-Jen Ku, Samuel Levy, Ravindra Majeti - Blood Cancer Discovery 2022 被引用: 47
