Paul A. Khavari
1991–2025 年に発表
- 107
- 論文数
- 27,031
- 被引用数
- 82
- h 指数
- 105
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology68.1%
- Medicine21%
- Immunology and Microbiology4.6%
- Agricultural and Biological Sciences1.2%
- Neuroscience1.2%
- Engineering1.1%
- その他2.8%
トピック
- Genomics and Chromatin Dynamics5.3%
- Cancer-related molecular mechanisms research5%
- RNA Research and Splicing4.7%
- RNA modifications and cancer4.5%
- Single-cell and spatial transcriptomics3.9%
- Epigenetics and DNA Methylation3.1%
- その他73.5%
共著者
- Howard Y. Chang21
- Zurab Siprashvili20
- Brian Zarnegar14
- Qun Lin14
- Adam J. Rubin13
- Kun Qu11
- Shiying Tao11
- Vanessa Lopez-Pajares11
- Aparna Bhaduri9
- Ryan A. Flynn9
- William J. Greenleaf9
- Dan E. Webster8
- Laura K. Donohue8
- Muthukumar Ramanathan8
- Andrew L. Ji7
- David L. Reynolds7
- Douglas F. Porter7
- M. Peter Marinkovich7
- Margaret Guo7
- Markus Kretz7
- Maxwell R. Mumbach7
- Weili Miao7
- Yang Zhao7
- Carolyn Lee6
全論文
- An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
著者: M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton Greenside, Nicholas A. Sinnott‐Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa S. Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang - Nature Methods 2017 被引用: 2,756
- Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma
著者: Andrew L. Ji, Adam J. Rubin, Kim Thrane, Sizun Jiang, David L. Reynolds, Robin M. Meyers, Margaret Guo, Benson M. George, Annelie Mollbrink, Joseph Bergenstråhle, Ludvig Larsson, Yunhao Bai, Bokai Zhu, Aparna Bhaduri, Jordan M. Meyers, Xavier Rovira‐Clavé, S. Tyler Hollmig, Sumaira Z. Aasi, Garry P. Nolan, Joakim Lundeberg, Paul A. Khavari - Cell 2020 被引用: 1,170
- Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
著者: Sophia K. Longo, Margaret Guo, Andrew L. Ji, Paul A. Khavari - Nature Reviews Genetics 2021 被引用: 1,034
- Advances in skin grafting and treatment of cutaneous wounds
著者: Bryan K. Sun, Zurab Siprashvili, Paul A. Khavari - Science 2014 被引用: 961
- The functions and unique features of long intergenic non-coding RNA
著者: Julia D. Ransohoff, Yuning Wei, Paul A. Khavari - Nature Reviews Molecular Cell Biology 2017 被引用: 1,394
- Spatially resolved clonal copy number alterations in benign and malignant tissue
著者: Andrew Erickson, Mengxiao He, Emelie Berglund, Maja Marklund, Reza Mirzazadeh, Niklas Schultz, Linda Kvastad, Alma Andersson, Ludvig Bergenstråhle, Joseph Bergenstråhle, Ludvig Larsson, Leire Alonso Galicia, Alia Shamikh, Elisa Basmaci, Teresita Díaz de Ståhl, Timothy Rajakumar, Dimitrios Doultsinos, Kim Thrane, Andrew L. Ji, Paul A. Khavari, Firaz Tarish, Anna Tanoglidi, Jonas Maaskola, Richard Colling, Tuomas Mirtti, Freddie C. Hamdy, Dan J. Woodcock, Thomas Helleday, Ian G. Mills, Alastair Lamb, Joakim Lundeberg - Nature 2022 被引用: 318
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
著者: Maxwell R. Mumbach, Adam J. Rubin, Ryan A Flynn, Chao Dai, Paul A. Khavari, William J. Greenleaf, Howard Y. Chang - Nature Methods 2016 被引用: 1,254
- Super-resolved spatial transcriptomics by deep data fusion
著者: Ludvig Bergenstråhle, Bryan He, Joseph Bergenstråhle, Xesús M. Abalo, Reza Mirzazadeh, Kim Thrane, Andrew L. Ji, Alma Andersson, Ludvig Larsson, Nathalie Stakenborg, Guy E. Boeckxstaens, Paul A. Khavari, James Zou, Joakim Lundeberg, Jonas Maaskola - Nature Biotechnology 2021 被引用: 176
- Methods to study RNA–protein interactions
著者: Muthukumar Ramanathan, Douglas F. Porter, Paul A. Khavari - Nature Methods 2019 被引用: 399
- Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks
著者: Adam J. Rubin, Kevin R. Parker, Ansuman T. Satpathy, Yanyan Qi, Beijing Wu, Alvin J. Ong, Maxwell R. Mumbach, Andrew L. Ji, Daniel Sunwook Kim, Seung Woo Cho, Brian Zarnegar, William J. Greenleaf, Howard Y. Chang, Paul A. Khavari - Cell 2018 被引用: 328
- Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
著者: Maxwell R. Mumbach, Ansuman T. Satpathy, Evan A. Boyle, Chao Dai, Benjamin G. Gowen, Seung Woo Cho, Michelle Nguyen, Adam J. Rubin, Jeffrey M. Granja, Katelynn R. Kazane, Yuning Wei, Trieu Nguyen, Peyton Greenside, M. Ryan Corces, Josh Tycko, Dimitre R. Simeonov, Nabeela Suliman, Rui Li, Jin Xu, Ryan A. Flynn, Anshul Kundaje, Paul A. Khavari, Alexander Marson, Jacob E. Corn, Thomas Quertermous, William J. Greenleaf, Howard Y. Chang - Nature Genetics 2017 被引用: 556
- RNA–protein interaction detection in living cells
著者: Muthukumar Ramanathan, Karim Majzoub, Deepti Rao, Poornima H. Neela, Brian Zarnegar, Smarajit Mondal, Julien G. Roth, Hui Gai, Joanna Kovalski, Zurab Siprashvili, Theo D. Palmer, Jan E. Carette, Paul A. Khavari - Nature Methods 2018 被引用: 315
- Advances in cutaneous squamous cell carcinoma
著者: M.C.G. Winge, Laura N. Kellman, Konnie Guo, Jean Y. Tang, Susan M. Swetter, Sumaira Z. Aasi, Kavita Y. Sarin, Anne Lynn S. Chang, Paul A. Khavari - Nature reviews. Cancer 2023 被引用: 131
- Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation
著者: Weili Miao, Douglas F. Porter, Vanessa Lopez-Pajares, Zurab Siprashvili, Robin M. Meyers, Yunhao Bai, Duy T. Nguyen, Lisa A. Ko, Brian Zarnegar, Ian Ferguson, Matthew M. Mills, C. E. Jilly‐Rehak, Cheng-Guo Wu, Yen‐Yu Yang, Jordan M. Meyers, Audrey W. Hong, David L. Reynolds, Muthukumar Ramanathan, Shiying Tao, Sizun Jiang, Ryan A. Flynn, Yinsheng Wang, Garry P. Nolan, Paul A. Khavari - Cell 2023 被引用: 72
- Control of somatic tissue differentiation by the long non-coding RNA TINCR
著者: Markus Kretz, Zurab Siprashvili, Ci Chu, Dan E. Webster, Ashley Zehnder, Kun Qu, Carolyn Lee, Ross J. Flockhart, Abigail F. Groff, Jennifer Chow, Danielle Johnston, Grace Kim, Robert C. Spitale, Ryan A. Flynn, Grace X. Y. Zheng, Subhadra Aiyer, Arjun Raj, John L. Rinn, Howard Y. Chang, Paul A. Khavari - Nature 2012 被引用: 981
- irCLIP platform for efficient characterization of protein–RNA interactions
著者: Brian Zarnegar, Ryan A Flynn, Ying Shen, T. Brian, Howard Y. Chang, Paul A. Khavari - Nature Methods 2016 被引用: 285
- p63 regulates proliferation and differentiation of developmentally mature keratinocytes
著者: Amy Truong, Markus Kretz, Todd W. Ridky, Robin A. Kimmel, Paul A. Khavari - Genes & Development 2006 被引用: 484
- Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
著者: Adam J. Rubin, Brook C. Barajas, Mayra Furlan-Magaril, Vanessa Lopez-Pajares, Maxwell R. Mumbach, I. BRIAN HOWARD, Daniel Sunwook Kim, Lisa D Boxer, Jonathan Cairns, Mikhail Spivakov, Steven Wingett, Minyi Shi, Zhixin Zhao, William J. Greenleaf, Anshul Kundaje, M Snyder, Howard Y. Chang, Peter Fraser, Paul A. Khavari - Nature Genetics 2017 被引用: 325
- Safety and Wound Outcomes Following Genetically Corrected Autologous Epidermal Grafts in Patients With Recessive Dystrophic Epidermolysis Bullosa
著者: Zurab Siprashvili, Ngon T. Nguyen, Emily S. Gorell, Kylie Loutit, Phuong Khuu, Louise K. Furukawa, H. Peter Lorenz, Thomas Leung, Douglas R. Keene, Kerri E. Rieger, Paul A. Khavari, Alfred T. Lane, Jean Y. Tang, M. Peter Marinkovich - JAMA 2016 被引用: 216
- The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
著者: Daniel Seung Kim, Viviana I. Risca, David L. Reynolds, James Chappell, Adam J. Rubin, Namyoung Jung, Laura K. Donohue, Vanessa Lopez-Pajares, Arwa S. Kathiria, Minyi Shi, Zhixin Zhao, Harsh Deep, Mahfuza Sharmin, Deepti Rao, Shin Lin, Howard Y. Chang, M Snyder, William J. Greenleaf, Anshul Kundaje, Paul A. Khavari - Nature Genetics 2021 被引用: 82
- The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2
著者: Joanna Kovalski, Aparna Bhaduri, Ashley Zehnder, Poornima H. Neela, Yonglu Che, Glenn G. Wozniak, Paul A. Khavari - Molecular Cell 2019 被引用: 151
- Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex
著者: Hyockman Kwon, Anthony N. Imbalzano, Paul A. Khavari, Robert E. Kingston, Michael R. Green - Nature 1994 被引用: 785
- The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer
著者: Zurab Siprashvili, Dan E. Webster, Danielle Johnston, Rajani M. Shenoy, Alexander Ungewickell, Aparna Bhaduri, Ross J. Flockhart, Brian Zarnegar, Yonglu Che, Francesca Meschi, Joseph D. Puglisi, Paul A. Khavari - Nature Genetics 2015 被引用: 189
- Conjugation of arginine oligomers to cyclosporin A facilitates topical delivery and inhibition of inflammation
著者: Jonathan B. Rothbard, Sarah Garlington, Qun Lin, Thorsten Kirschberg, Erik Kreider, P. Leo McGrane, Paul A. Wender, Paul A. Khavari - Nature Medicine 2000 被引用: 633
