John Quackenbush
1996–2025 年に発表
- 215
- 論文数
- 65,983
- 被引用数
- 105
- h 指数
- 191
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology39.9%
- Medicine37.4%
- Agricultural and Biological Sciences5.2%
- Computer Science4.5%
- Immunology and Microbiology4.4%
- Neuroscience1.8%
- その他6.8%
トピック
- Radiomics and Machine Learning in Medical Imaging5.5%
- Gene expression and cancer classification3.7%
- Bioinformatics and Genomic Networks3.1%
- Genomics and Phylogenetic Studies2.1%
- AI in cancer detection2%
- Artificial Intelligence in Healthcare and Education1.6%
- その他82%
共著者
- Kimberly Glass30
- Benjamin Haibe‐Kains23
- Dawn L. DeMeo20
- Marieke L. Kuijjer17
- Aedín C. Culhane15
- Hugo J.W.L. Aerts15
- Marouen Ben Guebila15
- Camila M. Lopes‐Ramos14
- John Platig14
- Geo Pertea12
- Joseph White12
- Edwin K. Silverman11
- Razvan Sultana11
- Rebekka Burkholz11
- Alvis Brāzma10
- Joseph N. Paulson10
- Svetlana Karamycheva10
- Katherine H. Shutta9
- Maud Fagny9
- Catherine A. Ball8
- Abhijeet R. Sonawane7
- Bryan Frank7
- Craig P. Hersh7
- Eleanor Howe7
全論文
- Artificial intelligence in radiology
著者: Ahmed Hosny, Chintan Parmar, John Quackenbush, Lawrence H. Schwartz, Hugo J.W.L. Aerts - Nature reviews. Cancer 2018 被引用: 3,629
- Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
著者: Hugo J.W.L. Aerts, Emmanuel Rios Velazquez, Ralph T. H. Leijenaar, Chintan Parmar, Patrick Großmann, Sara Carvalho, Johan Bussink, René Monshouwer, Benjamin Haibe‐Kains, D. Rietveld, Frank Hoebers, Michelle M. Rietbergen, C. René Leemans, André Dekker, John Quackenbush, Robert J. Gillies, Philippe Lambin - Nature Communications 2014 被引用: 5,145
- Transparency and reproducibility in artificial intelligence
著者: Benjamin Haibe‐Kains, George Alexandru Adam, Ahmed Hosny, Farnoosh Khodakarami, Massive Analysis Quality Control (MAQC) Society Board of Directors, Thakkar Shraddha, Rebecca Kusko, Susanna‐Assunta Sansone, Weida Tong, Russ Wolfinger, Christopher E. Mason, Wendell Jones, Joaquı́n Dopazo, Cesare Furlanello, Levi Waldron, Bo Wang, Chris McIntosh, Anna Goldenberg, Anshul Kundaje, Casey S. Greene, Tamara Broderick, Michael M. Hoffman, Jeffrey T. Leek, Keegan Korthauer, Wolfgang Huber, Alvis Brāzma, Joëlle Pineau, Robert Tibshirani, Trevor Hastie, John P. A. Ioannidis, John Quackenbush, Hugo J.W.L. Aerts - Nature 2020 被引用: 501
- Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues
著者: Camila M. Lopes‐Ramos, Cho-Yi Chen, Marieke L. Kuijjer, Joseph N. Paulson, Abhijeet R. Sonawane, Maud Fagny, John Platig, Kimberly Glass, John Quackenbush, Dawn L. DeMeo - Cell Reports 2020 被引用: 536
- Understanding Tissue-Specific Gene Regulation
著者: Abhijeet R. Sonawane, John Platig, Maud Fagny, Cho-Yi Chen, Joseph N. Paulson, Camila M. Lopes‐Ramos, Dawn L. DeMeo, John Quackenbush, Kimberly Glass, Marieke L. Kuijjer - Cell Reports 2017 被引用: 464
- TM4: A Free, Open-Source System for Microarray Data Management and Analysis
著者: A Saeed, Vasily Sharov, Joseph White, Jiatong Li, Wei Liang, Nirmal Bhagabati, John Braisted, Maria I. Klapa, Tracey Currier, Mathangi Thiagarajan, Alexander Sturn, M. Snuffin, A. Rezantsev, Д. А. Попов, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, John Quackenbush - BioTechniques 2003 被引用: 4,955
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
著者: Alvis Brāzma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul T. Spellman, C. J. Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank C. P. Holstege, Irene F. Kim, Victor Markowitz, John C. Matese, Helen Parkinson, Alan J. Robinson, Uğis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald C. Taylor, Jaak Vilo, Martin Vingron - Nature Genetics 2001 被引用: 4,106
- Somatic Mutations Drive Distinct Imaging Phenotypes in Lung Cancer
著者: Emmanuel Rios Velazquez, Chintan Parmar, Ying Liu, Thibaud Coroller, Gisele Cruz, Olya Stringfield, Zhaoxiang Ye, Mike Makrigiorgos, Fiona Fennessy, Raymond H. Mak, Robert J. Gillies, John Quackenbush, Hugo J.W.L. Aerts - Cancer Research 2017 被引用: 394
- Genome-Wide Sex and Gender Differences in Cancer
著者: Camila M. Lopes‐Ramos, John Quackenbush, Dawn L. DeMeo - Frontiers in Oncology 2020 被引用: 169
- Microarray data normalization and transformation
著者: John Quackenbush - Nature Genetics 2002 被引用: 2,007
- Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
著者: Katsunaga Sakai, M. Furuno, Mari Nakamura, J. Adachi, Ikuko Kagawa, M. Yoshino, I. Nikaido, Yoshiyuki Ishii, R. Saito, Ken Yagi, Shinji Kondo, Takahiro Arakawa, Naoki Osato, Daisuke Sasaki, Ayako Hara, Ai Miyazaki, Wataru Hashizume, Kazunori Waki, H. Konno, Hidemasa Bono, Hiroyuki Konno, T. Shiraki, Koichi Imotani, J. Kawai, Norihito Hayatsu, Harukazu Suzuki, Yuki Hasegawa, Akira Shinagawa, W. Hashizume, Naoko Sakazume, Itaru Yamanaka, Shiro Fukuda, Masaaki Furuno, Jun Adachi, Akira Yasunishi, Tomoko Hirozane-Kishikawa, Katsunori Aizawa, M. Yoshino, Toshiyuki Shiraki, P. Carninci, Kazuhiro Shibata, Masayoshi Itoh, H. Kawaji, Piero Carninci, K. Numata, M. Tomita, K. Sato, C. Schönbach, Yuki Hasegawa, I. V. Kurochkin, T. Nagashima, T. Gojobori, T. Okido, Masaru Tomita, Koji Numata, Akio Kanai, K Sato, D. Bradt, Yoshihide Hayashizaki, Christian Schönbach, Akihiko Konagaya, Takeshi Nagashima, Igor V. Kurochkin, Toshihisa Okido, Takashi Gojobori, Judith A. Blake, Benjamin L. King, Martin Ringwald, Carol J. Bult, David P. Hill, Louise M. McKenzie, Qi Dong, Sridhar Ramachandran, Dirck Bradt, Lois J. Maltais, C. Wells, Richard M. Baldarelli, Deborah J. Reed, Lori E Corbani, Sharon Cousins, Linsen Yang, Y. Zhu, Zheng Yuan, David Hume, Rohan D. Teasdale, Sean M. Grimmond, Alistair R. R. Forrest, Christine A. Wells, Timothy Ravasi, Geo Pertea, Yan Wang, Răzvan Sultana, John Quackenbush, Yong Suk Lee, Ines Yang, Lukas Wagner, Donna Maglott, Joan Pontius, Lynn M. Schriml, Alexander Kanapin ほか 37 名 - Nature 2002 被引用: 1,653
- The complete genome sequence of the gastric pathogen Helicobacter pylori
著者: Jean-F. Tomb, Owen White, Anthony R. Kerlavage, Rebecca A. Clayton, Granger G. Sutton, Robert Fleischmann, Karen A. Ketchum, Hans Peter Klenk, Steven R. Gill, Brian Dougherty, Karen Nelson, John Quackenbush, Lixin Zhou, Ewen F. Kirkness, Scott N. Peterson, Brendan Loftus, Delwood Richardson, Robert J. Dodson, Hanif Khalak, Anna Glodek, Keith McKenney, Lisa M. Fitzegerald, Norman Lee, Mark D. Adams, Erin K. Hickey, Douglas E. Berg, Jeanine D. Gocayne, Teresa R. Utterback, Jeremy Peterson, Jenny M. Kelley, Matthew Cotton, Janice M. Weidman, Claire Fujii, Cheryl Bowman, Larry Watthey, Erik Jakob Wallin, William S. Hayes, Mark Borodovsky, Peter D. Karp, Hamilton O. Smith, Claire M. Fraser, J. Craig Venter - Nature 1997 被引用: 3,561
- Passing Messages between Biological Networks to Refine Predicted Interactions
著者: Kimberly Glass, Curtis Huttenhower, John Quackenbush, Guo‐Cheng Yuan - PLoS ONE 2013 被引用: 317
- Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
著者: Jason I. Herschkowitz, Karl Simin, Victor Weigman, Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen Rasmussen, Laundette P. Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael G. Backlund, Yuzhi Yin, Andrey Khramtsov, Roy Bastein, John Quackenbush, Robert I. Glazer, Powel H. Brown, Jeffrey E. Green, Levy Kopelovich, Priscilla A. Furth, Juan Palazzo, Olufunmilayo I. Olopade, Philip S. Bernard, Gary A. Churchill, Terry Van Dyke, Charles M. Perou - Genome biology 2007 被引用: 1,265
- survcomp: an R/Bioconductor package for performance assessment and comparison of survival models
著者: Markus S. Schröder, Aedín C. Culhane, John Quackenbush, Benjamin Haibe-Kains - Bioinformatics, Bioinform. 2011 被引用: 510
- Data Analysis Strategies in Medical Imaging
著者: Chintan Parmar, Joseph D. Barry, Ahmed Hosny, John Quackenbush, Hugo J.W.L. Aerts - Clinical Cancer Research 2018 被引用: 166
- RNA-Seq analysis in MeV
著者: Eleanor Howe, Raktim Sinha, Daniel Schlauch, John Quackenbush - Bioinformatics, Bioinform. 2011 被引用: 541
- Molecular networks in Network Medicine: Development and applications
著者: Edwin K. Silverman, Harald Schmidt, Eleni Anastasiadou, Lucia Altucci, Marco Angelini, Lina Badimón, Jean‐Luc Balligand, Giuditta Benincasa, Giovambattista Capasso, Federica Conte, Antonella Di Costanzo, Lorenzo Farina, Giulia Fiscon, Laurent Gatto, Michele Gentili, Joseph Loscalzo, Cinzia Marchese, Claudio Napoli, Paola Paci, Manuela Petti, John Quackenbush, Paolo Tieri, Davide Viggiano, Gemma Vilahur, Kimberly Glass, Jan Baumbach - WIREs Systems Biology and Medicine 2020 被引用: 218
- Genesis: cluster analysis of microarray data
著者: Alexander Sturn, John Quackenbush, Zlatko Trajanoski - Bioinformatics, Bioinform. 2002 被引用: 1,805
- Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology
著者: Weimiao Wu, Chintan Parmar, Patrick Großmann, John Quackenbush, Philippe Lambin, Johan Bussink, Raymond H. Mak, Hugo J.W.L. Aerts - Frontiers in Oncology 2016 被引用: 372
- Challenges and emerging directions in single-cell analysis
著者: Guo‐Cheng Yuan, Long Cai, Michael B. Elowitz, Tariq Enver, Guoping Fan, Guoji Guo, Rafael A. Irizarry, Peter V. Kharchenko, Junhyong Kim, Stuart H. Orkin, John Quackenbush, Assieh Saadatpour, Timm Schroeder, Ramesh A. Shivdasani, Itay Tirosh - Genome biology 2017 被引用: 370
- Mitochondrial iron chelation ameliorates cigarette smoke–induced bronchitis and emphysema in mice
著者: Suzanne M. Cloonan, Kimberly Glass, María Laucho-Contreras, Abhiram R. Bhashyam, Morgan Cervo, Maria Pabón, Csaba Konràd, Francesca Polverino, Ilias Ι. Siempos, Elizabeth Perez, Kenji Mizumura, Manik C. Ghosh, Harikrishnan Parameswaran, Niamh C. Williams, Kristen T. Rooney, Zhi-Hua Chen, Monica Goldklang, Guo‐Cheng Yuan, Steven C. Moore, Dawn L. DeMeo, Tracey A. Rouault, Jeanine D’Armiento, Eric A. Schon, Giovanni Manfredi, John Quackenbush, Ashfaq Mahmood, Edwin K. Silverman, Caroline A. Owen, Augustine M.K. Choi - Nature Medicine 2016 被引用: 268
- Relationship of DNA Methylation and Gene Expression in Idiopathic Pulmonary Fibrosis
著者: Ivana V. Yang, Brent S. Pedersen, Einat Rabinovich, Corinne E. Hennessy, Elizabeth Davidson, Elissa Murphy, Brenda Juan Guardela, John Tedrow, Yingze Zhang, Mandal K. Singh, Mick Correll, Marvin I. Schwarz, Mark W. Geraci, Frank C. Sciurba, John Quackenbush, Avrum Spira, Naftali Kaminski, David A. Schwartz - American Journal of Respiratory and Critical Care Medicine 2014 被引用: 188
- TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
著者: Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush - Bioinformatics, Bioinform. 2003 被引用: 2,024
