Michael J. MacCoss
1999–2025 年に発表
- 184
- 論文数
- 42,477
- 被引用数
- 94
- h 指数
- 172
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology48.5%
- Medicine18.9%
- Chemistry18.4%
- Agricultural and Biological Sciences4.3%
- Immunology and Microbiology2.7%
- Environmental Science1.8%
- その他5.4%
トピック
- Advanced Proteomics Techniques and Applications7.3%
- Mass Spectrometry Techniques and Applications4.9%
- Metabolomics and Mass Spectrometry Studies4.9%
- Ubiquitin and proteasome pathways1.9%
- Mitochondrial Function and Pathology1.8%
- RNA and protein synthesis mechanisms1.7%
- その他77.5%
共著者
- Brendan MacLean43
- Gennifer E. Merrihew34
- William Stafford Noble29
- Christine C. Wu21
- Nicholas Shulman20
- Michael Riffle16
- Richard S. Johnson16
- Peter S. Rabinovitch13
- Jarrett D. Egertson12
- Michael R. Hoopmann12
- Vagisha Sharma12
- Alex Zelter11
- Andrew N. Hoofnagle11
- Brian C. Searle11
- John R. Yates11
- Trisha N. Davis11
- Lukas Käll10
- Deanna L. Plubell9
- Barbara Frewen8
- Eric Huang8
- Nathan Basisty8
- Philip M. Remes8
- Richard P. Beyer8
- Steven A. Carr8
全論文
- A cross-platform toolkit for mass spectrometry and proteomics
著者: Matthew Chambers, Brendan MacLean, Robert Burke, Dario Amodei, Daniel Ruderman, Steffen Neumann, Laurent Gatto, Bernd Fischer, Brian Pratt, Jarrett D. Egertson, Katherine Hoff, Darren Kessner, Natalie Tasman, Nicholas Shulman, Barbara Frewen, Tahmina A Baker, Mi‐Youn Brusniak, Christopher Paulse, David M. Creasy, Lisa Flashner, Kian Kani, Chris Moulding, Sean L. Seymour, Lydia M. Nuwaysir, Brent Lefebvre, Frank E. Kuhlmann, Joe Roark, Rainer Paape, Detlev Suckau, Tina Hemenway, Andreas Hühmer, James Langridge, B. Connolly, Trey Chadick, Krisztina Holly, Josh Eckels, Eric W. Deutsch, Robert L. Moritz, Jonathan E. Katz, David B. Agus, Michael J. MacCoss, David L. Tabb, Parag Mallick - Nature Biotechnology 2012 被引用: 4,308
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
著者: Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L. Finney, Barbara Frewen, Randall Kern, David L. Tabb, Daniel C. Liebler, Michael J. MacCoss - Bioinformatics, Bioinform. 2010 被引用: 4,966
- The ProteomeXchange consortium at 10 years: 2023 update
著者: Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2022 被引用: 865
- Semi-supervised learning for peptide identification from shotgun proteomics datasets
著者: Lukas Käll, Jesse D. Canterbury, Jason Weston, William Stafford Noble, Michael J. MacCoss - Nature Methods 2007 被引用: 2,567
- The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics
著者: Lindsay K. Pino, Brian C. Searle, James G. Bollinger, Brook L. Nunn, Brendan MacLean, Michael J. MacCoss - Mass Spectrometry Reviews 2017 被引用: 887
- How many human proteoforms are there?
著者: Ruedi Aebersold, Jeffrey N. Agar, I. Jonathan Amster, Mark S. Baker, Carolyn R. Bertozzi, Emily S. Boja, Catherine E. Costello, Benjamin F. Cravatt, Catherine Fenselau, Benjamin A. García, Ying Ge, Jeremy Gunawardena, Ronald C. Hendrickson, Paul J. Hergenrother, Christian G. Huber, Alexander R. Ivanov, Ole N. Jensen, Michael C. Jewett, Neil L. Kelleher, Laura L. Kiessling, Nevan J. Krogan, Martin R. Larsen, Joseph A. Loo, Rachel R. Ogorzalek Loo, Emma Lundberg, Michael J. MacCoss, Parag Mallick, Vamsi K. Mootha, Milan Mrksich, Tom W. Muir, Steven M. Patrie, James J. Pesavento, Sharon J. Pitteri, Henry Rodriguez, Alan Saghatelian, Wendy Sandoval, Hartmut Schlüter, Salvatore Sechi, Sarah A. Slavoff, Lloyd M. Smith, M Snyder, Paul M. Thomas, Mathias Uhlén, Jennifer E. Van Eyk, Marc Vidal, David R. Walt, Forest M. White, Evan R. Williams, Therese Wohlschlager, Vicki H. Wysocki, Nathan A. Yates, Nicolas L. Young, Bing Zhang - Nature Chemical Biology 2018 被引用: 944
- De novo design of high-affinity binders of bioactive helical peptides
著者: Susana Vázquez Torres, Philip J. Y. Leung, Preetham Venkatesh, Isaac D. Lutz, Fabian Hink, Huu‐Hien Huynh, Jessica O. Becker, Hsien‐Wei Yeh, David Juergens, Nathaniel R. Bennett, Andrew N. Hoofnagle, Eric Huang, Michael J. MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K. Bera, Alex Kang, Joshmyn De La Cruz, Paul M. Levine, Xinting Li, Mila Lamb, Stacey Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L. Watson, Joseph M. Rogers, David Baker - Nature 2023 被引用: 224
- Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics
著者: Kendra J. Adams, Brian Pratt, Neelanjan Bose, Laura G. Dubois, Lisa St. John‐Williams, Kevin M. Perrott, Karina Ky, Pankaj Kapahi, Vagisha Sharma, Michael J. MacCoss, M. Arthur Moseley, Carol A. Colton, Brendan MacLean, Birgit Schilling, J. Will Thompson, Alzheimer’s Disease Metabolomics Consortium - Journal of Proteome Research 2020 被引用: 627
- Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
著者: Brian C. Searle, Lindsay K. Pino, Jarrett D. Egertson, Ying S. Ting, Robert Lawrence, Brendan MacLean, Judit Villén, Michael J. MacCoss - Nature Communications 2018 被引用: 585
- Proteogenomic data and resources for pan-cancer analysis
著者: Yize Li, Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet, Yo Akiyama, Shankara Anand, Chet Birger, Song Cao, Rekha Chaudhary, Padmini Chilappagari, Marcin Cieślik, Antonio Colaprico, Daniel Cui Zhou, Corbin Day, Marcin J. Domagalski, Myvizhi Esai Selvan, David Fenyö, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Zeynep H. Gümüş, David I. Heiman, Michael Holck, Runyu Hong, Yingwei Hu, Eric J. Jaehnig, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Robert J. Klein, Jonathan T. Lei, Wen-Wei Liang, Yuxing Liao, Caleb M. Lindgren, Weiping Ma, Lei Ma, Michael J. MacCoss, Fernanda Martins Rodrigues, Wilson McKerrow, Ngoc B. Nguyen, Robert Oldroyd, Alexander Pilozzi, Pietro Pugliese, Boris Reva, Paul A. Rudnick, Kelly V. Ruggles, Dmitry Rykunov, Sara R. Savage, Michael Schnaubelt, Tobias Schraink, Zhiao Shi, Deepak Singhal, Xiaoyu Song, Erik Storrs, Nadezhda V. Terekhanova, Ratna R. Thangudu, Mathangi Thiagarajan, Liang-Bo Wang, Joshua M. Wang, Ying Wang, Bo Wen, Yige Wu, Matthew A. Wyczalkowski, Xin Yi, Lijun Yao, Xinpei Yi, Hui Zhang, Qing Zhang, Maya Zuhl, Gad Getz, Li Ding, Alexey I. Nesvizhskii, Pei Wang, Ana I. Robles, Bing Zhang, Samuel Payne, Alexander J. Lazar, Amanda G. Paulovich, Antonio Colaprico, Antonio Iavarone, Arul M. Chinnaiyan, Brian Druker, Chandan Kumar‐Sinha, Chelsea J. Newton, Chen Huang, D.R. Mani, Richard Smith, Emily M. Huntsman, Eric E. Schadt, Eunkyung An, Francesca Petralia, Galen Hostetter, Gilbert S. Omenn, Hanbyul Cho, Henry Rodriguez, Hui Zhang, Iga Kołodziejczak ほか 34 名 - Cancer Cell 2023 被引用: 233
- Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0
著者: Matthew The, Michael J. MacCoss, William Stafford Noble, Lukas Käll - Journal of the American Society for Mass Spectrometry 2016 被引用: 496
- The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics
著者: Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2019 被引用: 778
- Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries
著者: Lindsay K. Pino, Seth Just, Michael J. MacCoss, Brian C. Searle - Molecular & Cellular Proteomics 2020 被引用: 317
- Aminoglycoside antibiotics induce bacterial biofilm formation
著者: Lucas R. Hoffman, David A. D’Argenio, Michael J. MacCoss, Zhaoying Zhang, Roger A. Jones, Samuel I. Miller - Nature 2005 被引用: 1,318
- Using iRT, a normalized retention time for more targeted measurement of peptides
著者: Claudia Escher, Lukas Reiter, Brendan MacLean, Reto Ossola, Franz Herzog, John Chilton, Michael J. MacCoss, Oliver Rinner - PROTEOMICS 2012 被引用: 634
- Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline
著者: Vagisha Sharma, Josh Eckels, Birgit Schilling, Christina Ludwig, Jacob D. Jaffe, Michael J. MacCoss, Brendan MacLean - Molecular & Cellular Proteomics 2018 被引用: 285
- Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
著者: Mark Gerstein, Zhi John Lu, Eric L. Van Nostrand, Chao Cheng, Bradley I. Arshinoff, Tao Liu, Kevin Y. Yip, R. Robilotto, Andreas Rechtsteiner, Kohta Ikegami, Pedro Alves, Aurélien Chateigner, Marc D. Perry, Mitzi Morris, Raymond K. Auerbach, Xin Feng, Jing Leng, Anne Vielle, Wei Niu, Kahn Rhrissorrakrai, Ashish Agarwal, Roger P. Alexander, Galt P Barber, Cathleen Brdlik, Jennifer Brennan, Jeremy Brouillet, Adrian R. Carr, Ming-Sin Cheung, Hiram Clawson, Sergio Contrino, Luke O. Dannenberg, Abby F. Dernburg, Arshad Desai, Lindsay L. Dick, Andrea C. Dosé, Jiang Du, Thea A. Egelhofer, Sevinç Ercan, Ghia Euskirchen, Brent Ewing, Elise A. Feingold, Reto Gassmann, Peter J. Good, Phil Green, F. Gullier, Michelle Gutwein, Mark S. Guyer, Lukas Habegger, Ting Han, Jorja G. Henikoff, Stefan R. Henz, Angie S. Hinrichs, H. Holster, Tony Hyman, Al Iniguez, J. Janette, Morten B. Jensen, Masaomi Kato, W. James Kent, Ellen Kephart, Vishal Khivansara, Ekta Khurana, John K. Kim, Paulina Kolasinska-Zwierz, Eric C. Lai, Isabel Latorre, A. Leahey, Suzanna Lewis, Paul Lloyd, Lucas Lochovsky, Rebecca F. Lowdon, Yaniv Lubling, Rachel Lyne, Michael J. MacCoss, Sebastian D. Mackowiak, Marco Mangone, Sheldon McKay, Desirea Mecenas, Gennifer E. Merrihew, David M. Miller, Andrew Muroyama, John I. Murray, Siew-Loon Ooi, Vu Pham, T. Phippen, Elicia Preston, Nikolaus Rajewsky, Gunnar Rätsch, Heidi Rosenbaum, Joel Rozowsky, Kim Rutherford, Peter Ruzanov, Mihail Sarov, Rajkumar Sasidharan, Andrea Sboner, Paul Scheid, Eran Segal, Hyunjin Shin, Chong Shou, Frank J. Slack ほか 31 名 - Science 2010 被引用: 1,041
- Overexpression of Catalase Targeted to Mitochondria Attenuates Murine Cardiac Aging
著者: Dao‐Fu Dai, Luis F. Santana, Marc Vermulst, Daniela M. Tomazela, Mary J. Emond, Michael J. MacCoss, Katherine A. Gollahon, George M. Martin, Lawrence A. Loeb, Warren Ladiges, Peter S. Rabinovitch - Circulation 2009 被引用: 493
- A Deeper Look into Comet—Implementation and Features
著者: Jimmy K. Eng, Michael R. Hoopmann, Tahmina A. Jahan, Jarrett D. Egertson, William Stafford Noble, Michael J. MacCoss - Journal of the American Society for Mass Spectrometry 2015 被引用: 279
- Altered proteome turnover and remodeling by short‐term caloric restriction or rapamycin rejuvenate the aging heart
著者: Dao‐Fu Dai, Pabalu P. Karunadharma, Ying Ann Chiao, Nathan Basisty, David A. Crispin, Edward J. Hsieh, Tony Chen, Haiwei Gu, Danijel Djukovic, Daniel Raftery, Richard P. Beyer, Michael J. MacCoss, Peter S. Rabinovitch - Aging Cell 2014 被引用: 339
- Molecular architecture and assembly of the DDB1–CUL4A ubiquitin ligase machinery
著者: Stéphane Angers, Ti Li, Xianhua Yi, Michael J. MacCoss, Randall T. Moon, Ning Zheng - Nature 2006 被引用: 675
- Sampling the proteome by emerging single-molecule and mass spectrometry methods
著者: Michael J. MacCoss, Javier A. Alfaro, Danielle A. Faivre, Christine C. Wu, Meni Wanunu, Nikolai Slavov - Nature Methods 2023 被引用: 84
- Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins
著者: Thomas F. Martínez, Sally Lyons‐Abbott, Angie L. Bookout, Eduardo Vieira de Souza, Cynthia J. Donaldson, Joan Vaughan, Calvin J. Lau, Ariel Abramov, Arian F. Baquero, Karalee Baquero, Dave Friedrich, Justin Huard, Ray Davis, Bong-Chul Kim, Ty Koch, Aaron J. Mercer, Ayesha Misquith, Sara A. Murray, Sakara Perry, Lindsay K. Pino, Christina A. Sanford, Alex Simon, Yu Zhang, Garrett Zipp, Cristiano Valim Bizarro, Maxim N. Shokhirev, Andrew J. Whittle, Brian C. Searle, Michael J. MacCoss, Alan Saghatelian, Christopher A. Barnes - Cell Metabolism 2023 被引用: 78
- Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows
著者: Dario Amodei, Jarrett D. Egertson, Brendan MacLean, Richard S. Johnson, Gennifer E. Merrihew, Austin W. Keller, D. C. B. Marsh, Olga Vitek, Parag Mallick, Michael J. MacCoss - Journal of the American Society for Mass Spectrometry 2019 被引用: 166
