Ted Liefeld

• Michael Reich8
• Jill P. Mesirov7
• Pablo Tamayo6
• Nicolas Stransky5
• Jordi Barretina4
• Alykhan F. Shamji3
• Barbara A. Weir3
• Benito Muñoz3
• C. Suk-Yee Hon3
• Edmund V. Price3
• Gregory V. Kryukov3
• Jaime H. Cheah3
• Joshua A. Bittker3
• Joshua Gould3
• Nicole E. Bodycombe3
• Paul A. Clemons3
• Stuart L. Schreiber3
• Vlado Dančík3
• Aaron Shipway2
• Adam A. Margolin2
• Adam Korejwa2
• Alexandra East-Seletsky2
• Anupama Reddy2
• Ava Li2

1. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

   著者: Jordi Barretina, Giordano Caponigro, Nicolas Stransky, K. Venkatesan, Adam A. Margolin, Sung Joon Kim, Christopher J. Wilson, Joseph Lehár, Gregory V. Kryukov, Dmitriy Sonkin, Anupama Reddy, Manway Liu, Lauren Murray, Michael F. Berger, John E. Monahan, Paula Morais, Jodi Meltzer, Adam Korejwa, Judit Jané‐Valbuena, Felipa Mapa, Joseph Thibault, Eva Bric-Furlong, Pichai Raman, Aaron Shipway, Ingo H. Engels, Jill Cheng, Guoying Karen Yu, Jianjun Yu, Peter Aspesi, Melanie de Silva, Kalpana Jagtap, Michael D. Jones, Li Wang, Charlie Hatton, Emanuele Palescandolo, Supriya Gupta, Scott Mahan, Carrie Sougnez, Robert C. Onofrio, Ted Liefeld, Laura E. MacConaill, Wendy Winckler, Michael Reich, Nanxin Li, Jill P. Mesirov, Stacey Gabriel, Gad Getz, Kristin Ardlie, Vivien W. Chan, Vic E. Myer, Barbara L. Weber, Jeff Porter, Markus Warmuth, Peter M. Finan, Jennifer L. Harris, Matthew Meyerson, Todd R. Golub, Michael Morrissey, William R. Sellers, Robert Schlegel, Levi A. Garraway - Nature 2012 被引用: 8,599

2. The landscape of somatic copy-number alteration across human cancers

   著者: Rameen Beroukhim, Craig H. Mermel, Dale Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan, Jordi Barretina, Jesse S. Boehm, Jennifer Dobson, Mitsuyoshi Urashima, Kevin T. Mc Henry, Reid M. Pinchback, Azra H. Ligon, Yoon‐Jae Cho, Leila Haery, Heidi Greulich, Michael Reich, Wendy Winckler, Michael S. Lawrence, Barbara A. Weir, Kumiko Tanaka, Derek Y. Chiang, Adam J. Bass, Alice Loo, Carter Hoffman, John R. Prensner, Ted Liefeld, Qing Gao, Derek Yecies, Sabina Signoretti, Elizabeth A. Maher, Frederic J. Kaye, Hidefumi Sasaki, Joel E. Tepper, Jonathan A. Fletcher, Josep Tabernero, José Baselga, Ming‐Sound Tsao, Francesca Demichelis, Mark A. Rubin, Pasi A. Jänne, Mark J. Daly, Carmelo Nucera, Ross L. Levine, Benjamin L. Ebert, Stacey Gabriel, Anil K. Rustgi, Cristina R. Antonescu, Marc Ladanyi, Anthony Letai, Levi A. Garraway, Massimo Loda, David G. Beer, Lawrence D. True, Aikou Okamoto, Scott L. Pomeroy, Samuel Singer, Todd R. Golub, Eric S. Lander, Gad Getz, William R. Sellers, Matthew Meyerson - Nature 2010 被引用: 4,185

3. Correlating chemical sensitivity and basal gene expression reveals mechanism of action

   著者: Matthew G. Rees, Brinton Seashore‐Ludlow, Jaime H. Cheah, Drew Adams, Edmund V. Price, Shubhroz Gill, Sarah Javaid, Matthew E. Coletti, Victor Jones, Nicole E. Bodycombe, Christian K. Soule, Benjamin Alexander, Ava Li, Philip Montgomery, Joanne Kotz, C. Suk-Yee Hon, Benito Muñoz, Ted Liefeld, Vlado Dančík, Daniel A. Haber, Clary B. Clish, Joshua A. Bittker, Michelle Palmer, Bridget K. Wagner, Paul A. Clemons, Alykhan F. Shamji, Stuart L. Schreiber - Nature Chemical Biology 2015 被引用: 980

4. An Interactive Resource to Identify Cancer Genetic and Lineage Dependencies Targeted by Small Molecules

   著者: Amrita Basu, Nicole E. Bodycombe, Jaime H. Cheah, Edmund V. Price, Ke Liu, Giannina I. Schaefer, Richard Y. Ebright, Michelle L. Stewart, Daisuke Ito, Stephanie Wang, Abigail Bracha, Ted Liefeld, Mathias J. Wawer, Joshua C. Gilbert, Andrew J. Wilson, Nicolas Stransky, Gregory V. Kryukov, Vlado Dančík, Jordi Barretina, Levi A. Garraway, C. Suk-Yee Hon, Benito Muñoz, Joshua A. Bittker, Brent R. Stockwell, Dineo Khabele, Andrew M. Stern, Paul A. Clemons, Alykhan F. Shamji, Stuart L. Schreiber - Cell 2013 被引用: 891

5. GenePattern 2.0

   著者: Michael Reich, Ted Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P. Mesirov - Nature Genetics 2006 被引用: 2,122

6. Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset

   著者: Brinton Seashore‐Ludlow, Matthew G. Rees, Jaime H. Cheah, Murat Cokol, Edmund V. Price, Matthew E. Coletti, Victor Jones, Nicole E. Bodycombe, Christian K. Soule, Joshua Gould, Benjamin Alexander, Ava Li, Philip Montgomery, Mathias J. Wawer, Nurdan Kuru, Joanne Kotz, C. Suk-Yee Hon, Benito Muñoz, Ted Liefeld, Vlado Dančík, Joshua A. Bittker, Michelle Palmer, James E. Bradner, Alykhan F. Shamji, Paul A. Clemons, Stuart L. Schreiber - Cancer Discovery 2015 被引用: 888

7. Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis

   著者: Noa Novershtern, Aravind Subramanian, Lee N. Lawton, Raymond H. Mak, W. Nicholas Haining, Marie McConkey, Naomi Habib, Nir Yosef, Cindy Y. Chang, Tal Shay, Garrett M. Frampton, Adam Drake, Ilya Leskov, Björn Nilsson, Fred Preffer, David Dombkowski, John Evans, Ted Liefeld, John S. Smutko, Jianzhu Chen, Nir Friedman, Richard A. Young, Todd R. Golub, Aviv Regev, Benjamin L. Ebert - Cell 2011 被引用: 1,001

8. Initial genome sequencing and analysis of multiple myeloma

   著者: Michael A. Chapman, Michael S. Lawrence, Jonathan J. Keats, Kristian Cibulskis, Carrie Sougnez, Anna C. Schinzel, Christina L. Harview, Jean-Philippe Brunet, Gregory Ahmann, Mazhar Adli, Kenneth C. Anderson, Kristin Ardlie, Daniel Auclair, Angela Baker, P. Leif Bergsagel, B Bernstein, Yotam Drier, Rafaël Fonseca, Stacey Gabriel, Craig C. Hofmeister, Sundar Jagannath, Andrzej Jakubowiak, Amrita Krishnan, Joan Levy, Ted Liefeld, Sagar Lonial, Scott Mahan, Bunmi Mfuko, Stefano Monti, Louise M. Perkins, Robb Onofrio, Trevor J. Pugh, S. Vincent Rajkumar, Alex H. Ramos, David S. Siegel, Andrey Sivachenko, A. Keith Stewart, Suzanne Trudel, Ravi Vij, Douglas Voet, Wendy Winckler, Todd M. Zimmerman, John D. Carpten, J.M. Trent, William C. Hahn, Levi A. Garraway, Matthew Meyerson, Eric S. Lander, Gad Getz, Todd R. Golub - Nature 2011 被引用: 1,455

9. Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies

   著者: Glenn S. Cowley, Barbara A. Weir, Francisca Vázquez, Pablo Tamayo, Justine A. Scott, Scott Rusin, Alexandra East-Seletsky, Levi D. Ali, William FJ Gerath, Sarah E Pantel, Patrick H. Lizotte, Guozhi Jiang, Jessica Hsiao, Aviad Tsherniak, Elizabeth Dwinell, Simon Aoyama, Michael Okamoto, William F. Harrington, Ellen Gelfand, Thomas M Green, Mark J Tomko, Shuba Gopal, Terence C. Wong, Hubo Li, Sara Howell, Nicolas Stransky, Ted Liefeld, Dongkeun Jang, Jonathan Bistline, Barbara Hill Meyers, Scott A Armstrong, Ken C Anderson, Kimberly Stegmaier, Michael Reich, David Pellman, Jesse S. Boehm, Jill P. Mesirov, Todd R. Golub, David E. Root, William C. Hahn - Scientific Data 2014 被引用: 413

10. NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data

    著者: Eliah Overbey, Amanda Saravia-Butler, Zhe Zhang, Komal S. Rathi, Homer Fogle, Willian A. da Silveira, Richard Barker, Joseph J. Bass, Afshin Beheshti, Daniel C. Berrios, Elizabeth A. Blaber, Egle Cekanaviciute, Helio A. Costa, Laurence Davin, Kathleen M. Fisch, Samrawit Gebre, Matthew Geniza, Rachel Gilbert, Simon Gilroy, Gary Hardiman, Raúl Herranz, Yared H. Kidane, Colin P. S. Kruse, Michael Lee, Ted Liefeld, Norman Lewis, J. Tyson McDonald, Robert Meller, Tejaswini Mishra, Imara Y. Perera, Shayoni Ray, Sigrid Reinsch, Sara Brin Rosenthal, Michael Strong, Nathaniel J. Szewczyk, Candice Tahimic, Deanne Taylor, Joshua P. Vandenbrink, Alicia Villacampa, Silvio Weging, Chris Wolverton, Sarah E. Wyatt, Luis Zea, Sylvain V. Costes, Jonathan M. Galazka - iScience 2021 被引用: 49

11. Cytoscape: the network visualization tool for GenomeSpace workflows

    著者: Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov - F1000Research 2014 被引用: 217

12. Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

    著者: Jordi Barretina, Giordano Caponigro, Nicolas Stransky, K. Venkatesan, Adam A. Margolin, Sung Joon Kim, Christopher J. Wilson, Joseph Lehár, Gregory V. Kryukov, Dmitriy Sonkin, Anupama Reddy, Manway Liu, Lauren Murray, Michael F. Berger, John E. Monahan, Paula Morais, Jodi Meltzer, Adam Korejwa, Judit Jané‐Valbuena, Felipa Mapa, Joseph Thibault, Eva Bric-Furlong, Pichai Raman, Aaron Shipway, Ingo H. Engels, Jill Cheng, Guoying Karen Yu, Jianjun Yu, Peter Aspesi, Melanie de Silva, Kalpana Jagtap, Michael D. Jones, Li Wang, Charlie Hatton, Emanuele Palescandolo, Supriya Gupta, Scott Mahan, Carrie Sougnez, Robert C. Onofrio, Ted Liefeld, Laura E. MacConaill, Wendy Winckler, Michael Reich, Nanxin Li, Jill P. Mesirov, Stacey Gabriel, Gad Getz, Kristin Ardlie, Vivien W. Chan, Vic E. Myer, Barbara L. Weber, Jeff Porter, Markus Warmuth, Peter M. Finan, Jennifer L. Harris, Matthew Meyerson, Todd R. Golub, Michael Morrissey, William R. Sellers, Robert Schlegel, Levi A. Garraway - Nature 2012 被引用: 112

13. Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

    著者: Jeanette Johnson, Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld, Melanie Loth, Loyal A. Goff, Jacquelyn W. Zimmerman, Ben Kinny-Köster, Elizabeth M. Jaffee, Pablo Tamayo, Jill P. Mesirov, Michael Reich, Elana J. Fertig, Genevieve Stein-O’Brien - Nature Protocols 2023 被引用: 24

14. AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes

    著者: Jens Luebeck, E.-S. Huang, Forrest Kim, Ted Liefeld, Bhargavi Dameracharla, Rohil Ahuja, Daniel Schreyer, Gino Prasad, Michał Adamaszek, Rishaan Kenkre, Tushar Agashe, Devika Torvi, Thorin Tabor, Mădălina Giurgiu, So Yeon Kim, Hoon Kim, Peter J. Bailey, Roel G.W. Verhaak, Viraj Deshpande, Michael Reich, Paul S. Mischel, Jill P. Mesirov, Vineet Bafna - 2024 被引用: 21

15. Erratum: Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies

    著者: Glenn S. Cowley, Barbara A. Weir, Francisca Vázquez, Pablo Tamayo, Justine A. Scott, Scott Rusin, Alexandra East-Seletsky, Levi D. Ali, William FJ Gerath, Sarah E Pantel, Patrick H. Lizotte, Guozhi Jiang, Jessica Hsiao, Aviad Tsherniak, Elizabeth Dwinell, Simon Aoyama, Michael Okamoto, William F. Harrington, Ellen Gelfand, Thomas M Green, Mark J Tomko, Shuba Gopal, Terence C. Wong, Hubo Li, Sara Howell, Nicolas Stransky, Ted Liefeld, Dongkeun Jang, Jonathan Bistline, Barbara Hill Meyers, Scott A Armstrong, Ken C Anderson, Kimberly Stegmaier, Michael Reich, David Pellman, Jesse S. Boehm, Jill P. Mesirov, Todd R. Golub, David E. Root, William C. Hahn - Scientific Data 2014 被引用: 191

16. Globally distributed object identification for biological knowledgebases

    著者: Tim Clark, Sean Martin, Ted Liefeld - Briefings in Bioinformatics, Briefings Bioinform. 2004 被引用: 155

17. The GenePattern Notebook Environment

    著者: Michael Reich, Thorin Tabor, Ted Liefeld, Helga Thorvaldsdóttir, Barbara Hill, Pablo Tamayo, Jill P. Mesirov - Cell Systems 2017 被引用: 49

18. Computational knowledge integration in biopharmaceutical research

    著者: David Ficenec, Mark Osborne, Joël R. Pradines, Daniel R. Richards, Ramon M. Felciano, Raymond J. Cho, Richard O. Chen, Ted Liefeld, James Owen, Alan Ruttenberg, Christian G. Reich, Joseph Horvath, Tim Clark - Briefings in Bioinformatics, Briefings Bioinform. 2003 被引用: 41

19. The impact of Life Science Identifier on informatics data

    著者: Seán Martin, Moses M. Hohman, Ted Liefeld - Drug Discovery Today 2005 被引用: 29

20. GeneCruiser: a web service for the annotation of microarray data

    著者: Ted Liefeld, Michael Reich, Joshua Gould, Peili Zhang, Pablo Tamayo, Jill P. Mesirov - Bioinformatics, Bioinform. 2005 被引用: 29

21. GenePattern Flow Cytometry Suite

    著者: Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman - Source Code for Biology and Medicine, Source Code Biol. Medicine 2013 被引用: 17

22. Home Page

    著者: Ted Liefeld 被引用: 0

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