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Aaron L. Halpern

Active 1995–2023

54
Papers
40,091
Citations
43
h-index
48
i10-index

Citations

Citations per year for Aaron L. Halpern1877: 1 citations1930: 1 citations1966: 1 citations1973: 1 citations1976: 1 citations1987: 1 citations1991: 1 citations1993: 2 citations1995: 2 citations1996: 10 citations1997: 14 citations1998: 9 citations1999: 20 citations2000: 35 citations2001: 335 citations2002: 483 citations2003: 541 citations2004: 602 citations2005: 573 citations2006: 450 citations2007: 558 citations2008: 783 citations2009: 670 citations2010: 713 citations2011: 646 citations2012: 537 citations2013: 483 citations2014: 488 citations2015: 452 citations2016: 357 citations2017: 324 citations2018: 286 citations2019: 601 citations2020: 588 citations2021: 578 citations2022: 447 citations2023: 362 citations2024: 460 citations2025: 228 citations2026: 17 citations1878–1929: no citations, so these years are not shown1931–1965: no citations, so these years are not shown1967–1972: no citations, so these years are not shown1974–1975: no citations, so these years are not shown1977–1986: no citations, so these years are not shown1988–1990: no citations, so these years are not shown1992: no citations, so this year is not shown1994: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 6,064 citing papers, 32.8% of this breakdownUnited Kingdom: 1,385 citing papers, 7.5% of this breakdownGermany: 1,186 citing papers, 6.4% of this breakdownChina: 1,057 citing papers, 5.7% of this breakdownFrance: 743 citing papers, 4% of this breakdownCanada: 730 citing papers, 4% of this breakdownSpain: 565 citing papers, 3.1% of this breakdownAustralia: 545 citing papers, 2.9% of this breakdownJapan: 489 citing papers, 2.6% of this breakdownItaly: 474 citing papers, 2.6% of this breakdownNetherlands: 403 citing papers, 2.2% of this breakdownSweden: 364 citing papers, 2% of this breakdown
0%32.8%Other 24.2%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology57.3%
  • Medicine11.5%
  • Environmental Science10.8%
  • Agricultural and Biological Sciences5.5%
  • Neuroscience3.1%
  • Computer Science2.9%
  • Other8.9%

Topics

  • Genomics and Phylogenetic Studies10.7%
  • Microbial Community Ecology and Physiology4.3%
  • RNA and protein synthesis mechanisms3.6%
  • Chromosomal and Genetic Variations3.2%
  • Genomics and Rare Diseases2.1%
  • Cancer Genomics and Diagnostics1.8%
  • Other74.3%

Coauthors

All papers

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  1. Strelka2: fast and accurate calling of germline and somatic variants

    Authors: Sangtae Kim, Konrad Scheffler, Aaron L. Halpern, Mitchell A. Bekritsky, Eunho Noh, Morten Källberg, Xiaoyu Chen, Yeonbin Kim, Doruk Beyter, Peter Krusche, Christopher T. Saunders - Nature Methods 2018 cited by 1,777

  2. The Sequence of the Human Genome

    Authors: J. Craig Venter, Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard Mural, Granger G. Sutton, Hamilton O. Smith, Mark Yandell, Cheryl Evans, Robert A. Holt, Jeannine D. Gocayne, Peter G. Amanatides, Richard M. Ballew, Daniel H. Huson, Jennifer R. Wortman, Qing Zhang, Chinnappa D. Kodira, Xiangqun Zheng-Bradley, Lin Chen, Marian Skupski, G. Subramanian, Paul D. Thomas, Jinghui Zhang, George L. Gabor Miklos, Catherine R. Nelson, Samuel Broder, Andrew G. Clark, Joe Nadeau, Victor A. McKusick, Norton D. Zinder, Arnold J. Levine, Richard J. Roberts, Mel I. Simon, Carolyn W. Slayman, Michael W. Hunkapiller, Randall Bolanos, Arthur L. Delcher, Ian Dew, Daniel Fasulo, Michael J. Flanigan, Liliana Florea, Aaron L. Halpern, Sridhar Hannenhalli, Saul Kravitz, Samuel Lévy, Clark Mobarry, Knut Reinert, Karin Remington, Jane Abu-Threideh, Ellen M. Beasley, Kendra Biddick, Vivien Bonazzi, Rhonda Brandon, Michele Cargill, Ishwar Chandramouliswaran, Rosane Charlab, Kabir Chaturvedi, Zuoming Deng, Valentina Di Francesco, Patrick Dunn, Karen Eilbeck, Carlos Evangelista, Andrei Gabrielian, Weiniu Gan, Wangmao Ge, Fangcheng Gong, Zhiping Gu, Ping Guan, Thomas J. Heiman, Maureen E. Higgins, Rui‐Ru Ji, Zhaoxi Ke, Karen A. Ketchum, Zhongwu Lai, Yiding Lei, Zhenya Li, Jiayin Li, Yong Liang, Xiaoying Lin, Fu Lu, Gennady V. Merkulov, Natalia V. Milshina, Helen M. Moore, Ashwinikumar K. Naik, Vaibhav A. Narayan, Beena Neelam, Deborah Nusskern, Douglas B. Rusch, Steven L. Salzberg, Wei Shao, Bixiong Chris Shue, Jing‐Tao Sun, Zhen Yuan Wang, Aihui Wang, Xin Wang, Jian Wang, Ming-Hui Wei, Ron Wides, Chunlin Xiao, Chunhua Yan and 173 more - Science 2001 cited by 13,699

  3. Environmental Genome Shotgun Sequencing of the Sargasso Sea

    Authors: J. Craig Venter, Karin Remington, John F. Heidelberg, Aaron L. Halpern, Doug Rusch, Jonathan A. Eisen, Dongying Wu, Ian T. Paulsen, Karen E. Nelson, William Nelson, Derrick E. Fouts, Samuel Lévy, Anthony H. Knap, Michael W. Lomas, K. Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O. Smith - Science 2004 cited by 4,395

  4. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

    Authors: Richard A. Gibbs, Jeffrey Rogers, Michael G. Katze, Roger E. Bumgarner, George M. Weinstock, Elaine R. Mardis, Karin Remington, Robert L. Strausberg, J. Craig Venter, Richard K. Wilson, Mark A. Batzer, Carlos D. Bustamante, Evan E. Eichler, Matthew W. Hahn, Ross C. Hardison, Kateryna D. Makova, Webb Miller, Aleksandar Milosavljevic, Robert E. Palermo, Adam Siepel, James M. Sikela, Tony Attaway, Stephanie Bell, Kelly E. Bernard, Christian Buhay, Mimi N. Chandrabose, Marvin Dao, Clay Davis, Kimberly D. Delehaunty, Yan Ding, Huyen Dinh, Shannon Dugan-Rocha, Lucinda A. Fulton, Ramatu Ayiesha Gabisi, Toni T. Garner, Jennifer Godfrey, Alicia Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N. Jhangiani, Vandita Joshi, Ziad Khan, Ewen F. Kirkness, Andrew Cree, R. Gerald Fowler, Sandra Lee, Lora Lewis, Zhangwan Li, Yih-shin Liu, Stephanie Moore, Donna M. Muzny, Lynne V. Nazareth, Dinh Ngoc Ngo, Geoffrey Okwuonu, Grace Pai, David L. Parker, Heidie A. Paul, Cynthia Pfannkoch, Craig Pohl, Yu-Hui Rogers, San Juana Ruiz, Aniko Sabo, Jireh Santibanez, Brian Schneider, Scott M. Smith, Erica Sodergren, Amanda F. Svatek, Teresa R. Utterback, Selina Vattathil, Wesley C. Warren, Courtney White, Asif Chinwalla, Yucheng Feng, Aaron L. Halpern, LaDeana W. Hillier, Xiaoqiu Huang, Pat Minx, Joanne O. Nelson, Kymberlie Pepin, Xiang Qin, Granger G. Sutton, Eli Venter, Brian P. Walenz, John W. Wallis, Kim C. Worley, Shiaw‐Pyng Yang, Steven M. Jones, Marco A. Marra, Mariano Rocchi, Jacqueline E. Schein, Robert Baertsch, Laura Clarke, Miklós Csürös, Jarret Glasscock, R. Alan Harris, Paul Havlak, Andrew Jackson, Huaiyang Jiang and 76 more - Science 2007 cited by 1,451

  5. Spinal muscular atrophy diagnosis and carrier screening from genome sequencing data

    Authors: Xiao Chen, Alba Sanchis‐Juan, Courtney E. French, Andrew J. Connell, Isabelle Delon, Zoya Kingsbury, Aditi Chawla, Aaron L. Halpern, Ryan J. Taft, David Bentley, Matthew E.R. Butchbach, F. Lucy Raymond, Michael A. Eberle - Genetics in Medicine 2020 cited by 146

  6. A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

    Authors: Michael A. Eberle, Epameinondas Fritzilas, Peter Krusche, Morten Källberg, Benjamin L. Moore, Mitchell A. Bekritsky, Zamin Iqbal, Han‐Yu Chuang, Sean Humphray, Aaron L. Halpern, Semyon Kruglyak, Elliott H. Margulies, Gil McVean, David Bentley - Genome Research 2016 cited by 424

  7. Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays

    Authors: Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, Aaron L. Halpern, Norman Burns, Bahram G. Kermani, P. Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik A. Dahl, Andres Fernandez, Bryan Staker, Krishna Prasad Pant, Jonathan Baccash, Adam Borcherding, Anushka Brownley, Ryan James Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine T. Le, Jia Liu, Celeste McBride, Matt Morenzoni, Robert Morey, Karl Mutch, Helena Perazich, Kimberly J. Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel M. Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander Wait Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold Oliphant, W. C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid - Science 2009 cited by 1,260

  8. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

    Authors: Douglas B. Rusch, Aaron L. Halpern, Granger Sutton, Karla B. Heidelberg, Shannon J. Williamson, Shibu Yooseph, Dongying Wu, Jonathan A. Eisen, Jeff Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton O. Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews‐Pfannkoch, Joseph E. Venter, Kelvin Li, Saul Kravitz, John F. Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I. Falcón, Valeria Souza, Germán Bonilla‐Rosso, Luis E. Eguiarte, David M. Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Víctor A. Gallardo, Giselle Tamayo‐Castillo, Michael R. Ferrari, Robert L. Strausberg, Kenneth Nealson, Robert Friedman, M.E. Frazier, J. Craig Venter - PLoS Biology 2007 cited by 2,103

  9. The Genome Sequence of the Malaria Mosquito Anopheles gambiae

    Authors: Robert A. Holt, G. Subramanian, Aaron L. Halpern, Granger G. Sutton, Rosane Charlab, Deborah Nusskern, Patrick Wincker, Andrew G. Clark, José M. C. Ribeiro, Ron Wides, Steven L. Salzberg, Brendan Loftus, Mark Yandell, William H. Majoros, Douglas B. Rusch, Zhongwu Lai, Cheryl Kraft, Josep F. Abril, Véronique Anthouard, Peter Arensburger, Peter W. Atkinson, Holly Baden, Véronique de Berardinis, Danita Baldwin, Vladimı́r Beneš, Jim Biedler, Claudia Blass, Randall Bolanos, Didier Boscus, Mary Barnstead, Shuang Cai, Kabir Chatuverdi, George K. Christophides, Mathew A. Chrystal, Michèle Clamp, Anibal Cravchik, Val Curwen, Ali Dana, Art L. Delcher, Ian Dew, Cheryl Evans, Michael J. Flanigan, Anne Grundschober-Freimoser, Lisa Friedli, Zhiping Gu, Ping Guan, Roderic Guigó, Maureen E. Hillenmeyer, Susanne L. Hladun, James R. Hogan, Young Seok Hong, Jeffrey P. Hoover, Olivier Jaillon, Zhaoxi Ke, Chinnappa D. Kodira, E. B. Kokoza, Anastasios C. Koutsos, Ivica Letunić, Alex Levitsky, Yong Liang, Jing‐Jer Lin, Neil F. Lobo, John Lopez, Joel A. Malek, Tina C. McIntosh, Stephan Meister, Jason Miller, Clark Mobarry, Emmanuel Mongin, Sean D. Murphy, David A. O’Brochta, Cynthia Pfannkoch, Rong Qi, Megan A. Regier, Karin Remington, Hongguang Shao, Maria V. Sharakhova, Cynthia D. Sitter, Jyoti Shetty, Thomas J. Smith, Renee Strong, Jing‐Tao Sun, Dana Thomasová, Lucas Q. Ton, Pantelis Topalis, Zhijian Tu, Maria Unger, Brian P. Walenz, Aihui Wang, Jian Wang, Mei Wang, Xuelan Wang, Kerry J. Woodford, Jennifer R. Wortman, Martin Wu, Alison Yao, Evgeny M. Zdobnov, Zhang HongYu, Qi Zhao, Shaying Zhao and 22 more - Science 2002 cited by 2,045

  10. The Diploid Genome Sequence of an Individual Human

    Authors: Samuel Lévy, Granger Sutton, Pauline C. Ng, Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. MacDonald, Andy Wing Chun Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul Kravitz, Dana Busam, Karen Beeson, Tina C. McIntosh, Karin Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, M.E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter - PLoS Biology 2007 cited by 1,820

  11. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

    Authors: Christopher L. Dupont, Douglas B. Rusch, Shibu Yooseph, Mary‐Jane Lombardo, R. Alexander Richter, Ruben Valas, Mark Novotny, Joyclyn Yee-Greenbaum, Jeremy Selengut, Dan H. Haft, Aaron L. Halpern, Roger S. Lasken, Kenneth H. Nealson, Robert Friedman, J. Craig Venter - The ISME Journal 2011 cited by 560

  12. A Whole-Genome Assembly of Drosophila

    Authors: Eugene W. Myers, Granger G. Sutton, Art L. Delcher, Ian Dew, Dan P. Fasulo, Michael J. Flanigan, Saul Kravitz, Clark Mobarry, Knut Reinert, Karin Remington, Eric L. Anson, Randall Bolanos, Hui-Hsien Chou, Catherine Jordan, Aaron L. Halpern, Stefano Lonardi, Ellen M. Beasley, Rhonda Brandon, Lin Chen, Patrick Dunn, Zhongwu Lai, Yong Liang, Deborah Nusskern, Ming Zhan, Qing Zhang, Xiangqun Zheng-Bradley, Gerald M. Rubin, Mark D. Adams, J. Craig Venter - Science 2000 cited by 1,588

  13. Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction

    Authors: William J. Bruno, Nicholas D. Socci, Aaron L. Halpern - Molecular Biology and Evolution 2000 cited by 511

  14. CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis

    Authors: Andrea Gaedigk, Erin C. Boone, Steven E. Scherer, Seung‐been Lee, Ibrahim Numanagić, S. Cenk Şahinalp, Joshua D. Smith, Sean McGee, Aparna Radhakrishnan, Xiang Qin, Wendy Y. Wang, Emily Farrow, Nina Gonzaludo, Aaron L. Halpern, Deborah A. Nickerson, Neil Miller, Victoria M. Pratt, Lisa V. Kalman - Journal of Molecular Diagnostics 2022 cited by 46

  15. Life as a Guide to Its Own Origins

    Authors: Stuart A. Harrison, Hanadi Rammu, Feixue Liu, Aaron L. Halpern, Raquel Nunes Palmeira, Nick Lane - Annual Review of Ecology Evolution and Systematics 2023 cited by 43

  16. Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster

    Authors: Evgeny M. Zdobnov, Christian von Mering, Ivica Letunić, David Torrents, Mikita Suyama, Richard R. Copley, George K. Christophides, Dana Thomasová, Robert A. Holt, G. Subramanian, Hans-Michael Mueller, George Dimopoulos, John H. Law, Michael A. Wells, Ewan Birney, Rosane Charlab, Aaron L. Halpern, E. B. Kokoza, Cheryl Kraft, Zhongwu Lai, Suzanna Lewis, Christos Louis, Carolina Barillas‐Mury, Deborah Nusskern, Gerald M. Rubin, Steven L. Salzberg, Granger G. Sutton, Pantelis Topalis, Ron Wides, Patrick Wincker, Mark Yandell, Frank H. Collins, José M. C. Ribeiro, William M Gelbart, Fotis C. Kafatos, Peer Bork - Science 2002 cited by 551

  17. Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells

    Authors: Yann Marcy, Thomas Ishoey, Roger S. Lasken, Timothy B. Stockwell, Brian P. Walenz, Aaron L. Halpern, Karen Beeson, Susanne M. D. Goldberg, Stephen R. Quake - PLoS Genetics 2007 cited by 291

  18. Evolutionary distances for protein-coding sequences: modeling site- specific residue frequencies

    Authors: Aaron L. Halpern, William Bruno - Molecular Biology and Evolution 1998 cited by 362

  19. Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis

    Authors: Torsten Thomas, Doug Rusch, Matthew Z. DeMaere, Pui Yi Yung, Matt Lewis, Aaron L. Halpern, Karla B. Heidelberg, Suhelen Egan, Peter D. Steinberg, Staffan Kjelleberg - The ISME Journal 2010 cited by 315

  20. A Computer Program Designed to Screen Rapidly for HIV Type 1 Intersubtype Recombinant Sequences

    Authors: Adam Siepel, Aaron L. Halpern, Catherine A. Macken, Bette Korber - AIDS Research and Human Retroviruses 1995 cited by 270

  21. The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

    Authors: Shibu Yooseph, Granger Sutton, Douglas B. Rusch, Aaron L. Halpern, Shannon J. Williamson, Karin Remington, Jonathan A. Eisen, Karla B. Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S. Miller, Huiying Li, Susan T. Mashiyama, Marcin P. Joachimiak, Christopher van Belle, John‐Marc Chandonia, David Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Wen Huey Lee, Benjamin J. Raphael, Vineet Bafna, Robert Friedman, Steven E. Brenner, Adam Godzik, David Eisenberg, Jack E. Dixon, Susan S. Taylor, Robert L. Strausberg, M.E. Frazier, J. Craig Venter - PLoS Biology 2007 cited by 929

  22. The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

    Authors: Shannon J. Williamson, Douglas B. Rusch, Shibu Yooseph, Aaron L. Halpern, Karla B. Heidelberg, John I. Glass, Cynthia Andrews‐Pfannkoch, Douglas Fadrosh, Christopher S. Miller, Granger Sutton, M.E. Frazier, J. Craig Venter - PLoS ONE 2008 cited by 321

  23. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

    Authors: Roger A. Hoskins, Christopher D. Smith, Joseph W. Carlson, Antonio Bernardo Carvalho, Aaron L. Halpern, Joshua S. Kaminker, Cameron Kennedy, Chris Mungall, Beth A. Sullivan, Granger G. Sutton, Jiro C. Yasuhara, Barbara T. Wakimoto, Eugene W. Myers, S Celniker, Gerald M. Rubin, Gary H. Karpen - Genome biology 2002 cited by 282

  24. Whole-genome shotgun assembly and comparison of human genome assemblies

    Authors: Sorin Istrail, Granger G. Sutton, Liliana Florea, Aaron L. Halpern, Clark Mobarry, Ross A. Lippert, Brian P. Walenz, Hagit Shatkay, Ian Dew, Jason Miller, Michael J. Flanigan, Nathan Edwards, Randall Bolanos, Daniel Fasulo, Bjarni V. Halldórsson, Sridhar Hannenhalli, Russell Turner, Shibu Yooseph, Fu Lu, Deborah Nusskern, Bixiong Chris Shue, Xiangqun Zheng-Bradley, Fei Zhong, Arthur L. Delcher, Daniel H. Huson, Saul Kravitz, Laurent Mouchard, Knut Reinert, Karin Remington, Andrew G. Clark, Michael S. Waterman, Evan E. Eichler, Mark D. Adams, Michael W. Hunkapiller, Eugene W. Myers, J. Craig Venter - National Academy of Sciences, Proceedings of the National Academy of Sciences 2004 cited by 184