Daniel C. Koboldt
Active 2007–2024
- 66
- Papers
- 38,295
- Citations
- 44
- h-index
- 62
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology48.7%
- Medicine42%
- Immunology and Microbiology3.3%
- Agricultural and Biological Sciences1.4%
- Neuroscience1.2%
- Computer Science1.1%
- Other2.3%
Topics
- Cancer Genomics and Diagnostics7.5%
- Glioma Diagnosis and Treatment3.8%
- Acute Myeloid Leukemia Research3.7%
- Epigenetics and DNA Methylation3.1%
- RNA modifications and cancer2.2%
- Genomics and Phylogenetic Studies2.1%
- Other77.6%
Coauthors
- Richard K. Wilson27
- Elaine R. Mardis24
- David E. Larson22
- Li Ding20
- Robert S. Fulton18
- Michael D. McLellan15
- Vincent Magrini14
- Ken Chen11
- David J. Dooling10
- Qunyuan Zhang10
- Heather K. Schmidt9
- Joshua F. McMichael9
- Katherine E. Miller9
- Michael C. Wendl9
- Sean McGrath9
- Timothy J. Ley8
- Catherine E. Cottrell7
- Christopher A. Miller7
- Christopher Harris7
- Dong Shen7
- Peter White7
- Anthony R. Miller6
- Benjamin Kelly6
- Cyriac Kandoth6
All papers
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Authors: Roger E. McLendon, D D Bigner, Allan H. Friedman, Erwin G. Van Meir, Gena M. Mastrogianakis, Jeffrey J. Olson, Daniel J. Brat, Tom Mikkelsen, Norman L. Lehman, Ken Aldape, W.K. Alfred Yung, Oliver Bögler, Scott Vandenberg, Mitchel S. Berger, Michael D. Prados, Donna M. Muzny, Margaret Morgan, Stephen W. Scherer, Aniko Sabo, Lynn Nazareth, Lora Lewis, Otis Hall, Yiming Zhu, Yanru Ren, Omar Alvi, Jiqiang Yao, Alicia Hawes, Shalini N. Jhangiani, Gerald Fowler, Anthony San Lucas, Christie Kovar, Andrew Cree, Huyen Dinh, Jireh Santibanez, Vandita Joshi, Manuel L. Gonzalez‐Garay, Christopher A. Miller, Aleksandar Milosavljevic, David A. Wheeler, Richard A. Gibbs, L A Donehower, Kristian Cibulskis, Carrie Sougnez, Tim Fennell, Scott Mahan, Jane Wilkinson, Liuda Ziaugra, Robert C. Onofrio, Toby Bloom, Robert Nicol, Kristin Ardlie, Jennifer Baldwin, Stacey Gabriel, Eric S. Lander, Gad Getz, Wendy Winckler, Roel G.W. Verhaak, Michael S. Lawrence, Michael O’Kelly, Jim Robinson, Gabriele Alexe, Rameen Beroukhim, Scott L. Carter, Derek Y. Chiang, Josh Gould, Supriya Gupta, Josh Korn, Craig H. Mermel, Jill P. Mesirov, Stefano Monti, Huy Nguyen, Melissa Parkin, Michael Reich, Nicolas Stransky, Barbara A. Weir, Levi A. Garraway, Todd R. Golub, Matthew Meyerson, Jun Li, Robert S. Fulton, Michael D. McLellan, John Wallis, David E. Larson, Xiaoqi Shi, Rachel M. Abbott, Lucinda Fulton, Ken Chen, Daniel C. Koboldt, Michael C. Wendl, Rick Meyer, Yuzhu Tang, Ling Lin, John R. Osborne, Brian H. Dunford-Shore, Tracie L. Miner, Kim D. Delehaunty, Chris Markovic, G.M. Swift, William Courtney, Craig Pohl - Nature 2008 cited by 7,856
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Authors: Daniel C. Koboldt, Qunyuan Zhang, David E. Larson, Dong Shen, Michael D. McLellan, Ling Lin, Christopher A. Miller, Elaine R. Mardis, Li Ding, Richard K. Wilson - Genome Research 2012 cited by 5,323
- Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
Authors: Hirokazu Matsushita, Matthew D. Vesely, Daniel C. Koboldt, Charles G. Rickert, Ravindra Uppaluri, Vincent Magrini, Cora D. Arthur, J. Michael White, Yee-Shiuan Chen, Lauren Shea, Jasreet Hundal, Michael C. Wendl, Ryan Demeter, Todd Wylie, James P. Allison, Mark J. Smyth, Lloyd J. Old, Elaine R. Mardis, Robert D. Schreiber - Nature 2012 cited by 1,297
- Best practices for variant calling in clinical sequencing
Authors: Daniel C. Koboldt - Genome Medicine 2020 cited by 411
- VarScan: variant detection in massively parallel sequencing of individual and pooled samples
Authors: Daniel C. Koboldt, Ken Chen, Todd Wylie, David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding - Bioinformatics, Bioinform. 2009 cited by 1,427
- DNMT3A Mutations in Acute Myeloid Leukemia
Authors: Timothy J. Ley, Li Ding, Matthew J. Walter, Michael D. McLellan, Tamara Lamprecht, David E. Larson, Cyriac Kandoth, Jacqueline E. Payton, Jack Baty, John S. Welch, Christopher Harris, Cheryl F. Lichti, R. Reid Townsend, Robert S. Fulton, David J. Dooling, Daniel C. Koboldt, Heather K. Schmidt, Qunyuan Zhang, John R. Osborne, Ling Lin, Michelle D. O’Laughlin, Joshua F. McMichael, Kim D. Delehaunty, Sean McGrath, Lucinda A. Fulton, Vincent Magrini, Tammi L. Vickery, Jasreet Hundal, Lisa L. Cook, Joshua J. Conyers, Gary W. Swift, Jerry P. Reed, Patricia A. Alldredge, Todd Wylie, Jason Walker, Joelle Kalicki, Mark A. Watson, Sharon E. Heath, William D. Shannon, Nobish Varghese, Rakesh Nagarajan, Peter Westervelt, Michael H. Tomasson, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Elaine R. Mardis, Richard K. Wilson - New England Journal of Medicine 2010 cited by 1,980
- Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
Authors: Li Ding, Timothy J. Ley, David E. Larson, Christopher A. Miller, Daniel C. Koboldt, John S. Welch, Julie Ritchey, Margaret A. Young, Tamara Lamprecht, Michael D. McLellan, Joshua F. McMichael, John W. Wallis, Charles Lu, Dong Shen, Christopher Harris, David J. Dooling, Robert S. Fulton, Lucinda Fulton, Ken Chen, Heather K. Schmidt, Joelle Kalicki-Veizer, Vincent Magrini, Lisa Cook, Sean McGrath, Tammi L. Vickery, Michael C. Wendl, Sharon E. Heath, Mark A. Watson, Daniel C. Link, Michael H. Tomasson, William D. Shannon, Jacqueline E. Payton, Shashikant Kulkarni, Peter Westervelt, Matthew J. Walter, Timothy A. Graubert, Elaine R. Mardis, Richard K. Wilson, John F. DiPersio - Nature 2012 cited by 2,027
- Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
Authors: Elaine R. Mardis, Li Ding, David J. Dooling, David E. Larson, Michael D. McLellan, Ken Chen, Daniel C. Koboldt, Robert S. Fulton, Kim D. Delehaunty, Sean McGrath, Lucinda A. Fulton, Devin P. Locke, Vincent Magrini, Rachel M. Abbott, Tammi L. Vickery, Jerry S. Reed, Jody S. Robinson, Todd Wylie, Scott M. Smith, Lynn K. Carmichael, James M. Eldred, Christopher Harris, Jason Walker, Joshua B. Peck, Feiyu Du, Adam F. Dukes, Gabriel E. Sanderson, Anthony M. Brummett, Eric M. Clark, Joshua F. McMichael, Rick Meyer, Jonathan K. Schindler, Craig Pohl, John W. Wallis, Xiaoqi Shi, Ling Lin, Heather K. Schmidt, Yuzhu Tang, Carrie A. Haipek, Madeline E. Wiechert, Jolynda V. Ivy, Joelle Kalicki, Glendoria Elliott, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark A. Watson, Jack Baty, Sharon E. Heath, William D. Shannon, Rakesh Nagarajan, Daniel C. Link, Matthew J. Walter, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson, Timothy J. Ley - New England Journal of Medicine 2009 cited by 2,226
- Activating HER2 Mutations in HER2 Gene Amplification Negative Breast Cancer
Authors: Ron Bose, Shyam M. Kavuri, Adam C. Searleman, Wei Shen, Dong Shen, Daniel C. Koboldt, John Monsey, Nicholas Goel, Adam B. Aronson, Shunqiang Li, X. Cynthia, Li Ding, Elaine R. Mardis, Matthew J. Ellis - Cancer Discovery 2012 cited by 880
- Somatic mutations affect key pathways in lung adenocarcinoma
Authors: Li Ding, Gad Getz, David A. Wheeler, Elaine R. Mardis, Michael D. McLellan, Kristian Cibulskis, Carrie Sougnez, Heidi Greulich, Donna M. Muzny, Margaret Morgan, Lucinda Fulton, Robert S. Fulton, Qunyuan Zhang, Michael C. Wendl, Michael S. Lawrence, David E. Larson, Ken Chen, David J. Dooling, Aniko Sabo, Alicia Hawes, Hua Shen, Shalini N. Jhangiani, Lora Lewis, Otis Hall, Yiming Zhu, Tittu Mathew, Yanru Ren, Jiqiang Yao, Steven E. Scherer, Kerstin Clerc, Ginger Metcalf, Brian Ng, Aleksandar Milosavljevic, Manuel L. Gonzalez‐Garay, John R. Osborne, Rick Meyer, Xiaoqi Shi, Yuzhu Tang, Daniel C. Koboldt, Ling Lin, Rachel M. Abbott, Tracie L. Miner, Craig Pohl, Ginger Fewell, Carrie A. Haipek, Heather K. Schmidt, Brian H. Dunford-Shore, Aldi T. Kraja, Seth D. Crosby, Christopher S. Sawyer, Tammi L. Vickery, Sacha N Sander, Jody S. Robinson, Wendy Winckler, Jennifer Baldwin, Lucian R. Chirieac, Amit Dutt, Tim Fennell, Megan Hanna, Bruce E. Johnson, Robert C. Onofrio, Roman K. Thomas, Giovanni Tonon, Barbara A. Weir, Xiao‐Jun Zhao, Liuda Ziaugra, Michael C. Zody, Thomas J. Giordano, Mark B. Orringer, Jack A. Roth, Margaret R. Spitz, Ignacio I. Wistuba, Bradley A. Ozenberger, Peter J. Good, Andrew C. Chang, David G. Beer, Mark A. Watson, Marc Ladanyi, Stephen Broderick, Akihiko Yoshizawa, William D. Travis, William Pao, Michael A. Province, George M. Weinstock, Harold Varmus, Stacey Gabriel, Eric S. Lander, Richard A. Gibbs, Matthew Meyerson, Richard K. Wilson - Nature 2008 cited by 2,750
- The Origin and Evolution of Mutations in Acute Myeloid Leukemia
Authors: John S. Welch, Timothy J. Ley, Daniel C. Link, Christopher A. Miller, David E. Larson, Daniel C. Koboldt, Lukas D. Wartman, Tamara Lamprecht, Fulu Liu, Jun Xia, Cyriac Kandoth, Robert S. Fulton, Michael D. McLellan, David J. Dooling, John W. Wallis, Ken Chen, Christopher Harris, Heather K. Schmidt, Joelle Kalicki-Veizer, Charles Lu, Qunyuan Zhang, Ling Lin, Michelle D. O’Laughlin, Joshua F. McMichael, Kim D. Delehaunty, Lucinda A. Fulton, Vincent Magrini, Sean McGrath, Ryan Demeter, Tammi L. Vickery, Jasreet Hundal, Lisa L. Cook, Gary W. Swift, Jerry P. Reed, Patricia A. Alldredge, Todd Wylie, Jason Walker, Mark A. Watson, Sharon E. Heath, William D. Shannon, Nobish Varghese, Rakesh Nagarajan, Jacqueline E. Payton, Jack Baty, Shashikant Kulkarni, Jeffery M. Klco, Michael H. Tomasson, Peter Westervelt, Matthew J. Walter, Timothy A. Graubert, John F. DiPersio, Li Ding, Elaine R. Mardis, Richard K. Wilson - Cell 2012 cited by 1,576
- The Next-Generation Sequencing Revolution and Its Impact on Genomics
Authors: Daniel C. Koboldt, Karyn Meltz Steinberg, David E. Larson, Richard K. Wilson, Elaine R. Mardis - Cell 2013 cited by 1,056
- SomaticSniper: identification of somatic point mutations in whole genome sequencing data
Authors: David E. Larson, Christopher C. Harris, Ken Chen, Daniel C. Koboldt, Travis E. Abbott, David J. Dooling, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding - Bioinformatics, Bioinform. 2011 cited by 693
- MuSiC: Identifying mutational significance in cancer genomes
Authors: Nathan D. Dees, Qunyuan Zhang, Cyriac Kandoth, Michael C. Wendl, William Schierding, Daniel C. Koboldt, Thomas B. Mooney, Matthew B. Callaway, David J. Dooling, Elaine R. Mardis, Richard K. Wilson, Li Ding - Genome Research 2012 cited by 740
- Whole-genome analysis informs breast cancer response to aromatase inhibition
Authors: Matthew J. Ellis, Li Ding, Dong Shen, Jingqin Luo, Vera J. Suman, John W. Wallis, Brian Andrew Van Tine, Jeremy Hoog, Reece Goiffon, Theodore C. Goldstein, Sam Ng, Lin Li, Robert J. Crowder, Jacqueline Snider, Karla V. Ballman, Jason D. Weber, Ken Chen, Daniel C. Koboldt, Cyriac Kandoth, William Schierding, Joshua F. McMichael, Christopher A. Miller, Charles Lu, Christopher Harris, Michael D. McLellan, Michael C. Wendl, Katherine DeSchryver, D. Craig Allred, Laura J. Esserman, Gary Unzeitig, Julie A. Margenthaler, Gildy V. Babiera, P. Kelly Marcom, J. Michael Guenther, Marilyn Leitch, Kelly K. Hunt, John A. Olson, Tao Yu, Christopher A. Maher, Lucinda Fulton, Robert S. Fulton, Michelle Harrison, Ben Oberkfell, Feiyu Du, Ryan Demeter, Tammi L. Vickery, Adnan Elhammali, Helen Piwnica‐Worms, Sandra McDonald, Mark A. Watson, David J. Dooling, David M. Ota, Li-Wei Chang, Ron Bose, Timothy J. Ley, David Piwnica‐Worms, Joshua M. Stuart, Richard K. Wilson, Elaine R. Mardis - Nature 2012 cited by 1,035
- Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes
Authors: Timothy A. Graubert, Dong Shen, Li Ding, Theresa Okeyo-Owuor, Cara L Lunn, Jin Shao, Kilannin Krysiak, Christopher Harris, Daniel C. Koboldt, David E. Larson, Michael D. McLellan, David J. Dooling, Rachel M. Abbott, Robert S. Fulton, Heather K. Schmidt, Joelle Kalicki-Veizer, Michelle D. O’Laughlin, Marcus Grillot, Jack Baty, Sharon E. Heath, John L. Frater, Talat Nasim, Daniel C. Link, Michael H. Tomasson, Peter Westervelt, John F. DiPersio, Elaine R. Mardis, Timothy J. Ley, Richard K. Wilson, Matthew J. Walter - Nature Genetics 2011 cited by 582
- The Alzheimer's Disease Sequencing Project: Study design and sample selection
Authors: Gary W. Beecham, Joshua C. Bis, Eden R. Martin, Seung Hoan Choi, Anita L. DeStefano, Cornelia M. van Duijn, Myriam Fornage, S.B. Gabriel, Daniel C. Koboldt, David E. Larson, A.C. Naj, Bruce M. Psaty, William Salerno, William S. Bush, Tatiana Foroud, Ellen M. Wijsman, Lindsay A. Farrer, Alison Goate, Jonathan L. Haines, Margaret A. Pericak‐Vance, Eric Boerwinkle, Richard Mayeux, Sudha Seshadri, Gerard D. Schellenberg - Neurology Genetics 2017 cited by 237
- Patterns and functional implications of rare germline variants across 12 cancer types
Authors: Charles Lu, Mingchao Xie, Michael C. Wendl, Jiayin Wang, Michael D. McLellan, Mark D.M. Leiserson, Kuan‐lin Huang, Matthew A. Wyczalkowski, Reyka G. Jayasinghe, Tapahsama Banerjee, Jie Ning, Piyush Tripathi, Qunyuan Zhang, Beifang Niu, Kai Ye, Heather K. Schmidt, Robert S. Fulton, Joshua F. McMichael, Prag Batra, Cyriac Kandoth, Maheetha Bharadwaj, Daniel C. Koboldt, Christopher A. Miller, Krishna Kanchi, James M. Eldred, David E. Larson, John S. Welch, Ming You, Bradley A. Ozenberger, Ramaswamy Govindan, Matthew J. Walter, Matthew J. Ellis, Elaine R. Mardis, Timothy A. Graubert, John F. DiPersio, Timothy J. Ley, Richard K. Wilson, Paul J. Goodfellow, Benjamin J. Raphael, Feng Chen, Kimberly J. Johnson, Jeffrey D. Parvin, Li Ding - Nature Communications 2015 cited by 313
- Genome remodelling in a basal-like breast cancer metastasis and xenograft
Authors: Li Ding, Matthew J. Ellis, Shunqiang Li, David E. Larson, Ken Chen, John W. Wallis, Christopher Harris, Michael D. McLellan, Robert S. Fulton, Lucinda Fulton, Rachel M. Abbott, Jeremy Hoog, David J. Dooling, Daniel C. Koboldt, Heather K. Schmidt, Joelle Kalicki, Qunyuan Zhang, Lei Chen, Ling Lin, Michael C. Wendl, Joshua F. McMichael, Vincent Magrini, Lisa Cook, Sean McGrath, Tammi L. Vickery, Elizabeth L. Appelbaum, Katherine DeSchryver, Sherri R. Davies, Therese Guintoli, Lin Li, Robert J. Crowder, Tao Yu, Jacqueline Snider, Scott M. Smith, Adam F. Dukes, Gabriel E. Sanderson, Craig Pohl, Kim D. Delehaunty, Catrina C. Fronick, Kimberley A. Pape, Jerry S. Reed, Jody S. Robinson, Jennifer S. Hodges, William Schierding, Nathan D. Dees, Dong Shen, Devin P. Locke, Madeline E. Wiechert, James M. Eldred, Josh B. Peck, Benjamin J. Oberkfell, Justin T. Lolofie, Feiyu Du, Amy Hawkins, Michelle D. O’Laughlin, Kelly E. Bernard, Mark Cunningham, Glendoria Elliott, Mark Mason, Dominic M. Thompson, Jennifer Ivanovich, Paul J. Goodfellow, Charles M. Perou, George M. Weinstock, Rebecca Aft, Mark A. Watson, Timothy J. Ley, Richard K. Wilson, Elaine R. Mardis - Nature 2010 cited by 1,172
- Using VarScan 2 for Germline Variant Calling and Somatic Mutation Detection
Authors: Daniel C. Koboldt, David E. Larson, Richard K. Wilson - Current Protocols in Bioinformatics 2013 cited by 225
- Detection of brain somatic variation in epilepsy‐associated developmental lesions
Authors: Tracy A. Bedrosian, Katherine E. Miller, Olivia Grischow, Kathleen M. Schieffer, Stephanie LaHaye, Hyojung Yoon, Anthony R. Miller, Jason B. Navarro, Jesse J. Westfall, Kristen Leraas, Samantha Choi, Rachel Williamson, James Fitch, Benjamin Kelly, Peter White, Kristy Lee, Sean McGrath, Catherine E. Cottrell, Vincent Magrini, Jeffrey R. Leonard, Jonathan Pindrik, Ammar Shaikhouni, Daniel R. Boué, Diana Thomas, Christopher R. Pierson, Richard K. Wilson, Adam P. Ostendorf, Elaine R. Mardis, Daniel C. Koboldt - Epilepsia 2022 cited by 53
- Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
Authors: Michael J. Montague, Gang Li, Barbara Gandolfi, Razib Khan, Bronwen Aken, S. Searle, Patrick Minx, LaDeana Hillier, Daniel C. Koboldt, Brian W. Davis, Carlos A. Driscoll, Christina S. Barr, Kevin Blackistone, Javier Quilez, Belén Lorente-Galdós, Tomàs Marquès‐Bonet, Can Alkan, Gregg W.C. Thomas, Matthew W. Hahn, Marilyn Menotti‐Raymond, Stephen J. O’Brien, Richard K. Wilson, Leslie A. Lyons, William J. Murphy, Wesley C. Warren - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 360
- Clonal Architecture of Secondary Acute Myeloid Leukemia
Authors: Matthew J. Walter, Dong Shen, Li Ding, Jin Shao, Daniel C. Koboldt, Ken Chen, David E. Larson, Michael D. McLellan, David J. Dooling, Rachel M. Abbott, Robert S. Fulton, Vincent Magrini, Heather K. Schmidt, Joelle Kalicki-Veizer, Michelle D. O’Laughlin, Xian Fan, Marcus Grillot, Sarah Witowski, Sharon E. Heath, John L. Frater, William Eades, Michael H. Tomasson, Peter Westervelt, John F. DiPersio, Daniel C. Link, Elaine R. Mardis, Timothy J. Ley, Richard K. Wilson, Timothy A. Graubert - New England Journal of Medicine 2012 cited by 771
- Exome sequencing of Finnish isolates enhances rare-variant association power
Authors: Adam E. Locke, Karyn Meltz Steinberg, Charleston W. K. Chiang, Susan K. Service, Aki S. Havulinna, Laurel Stell, Matti Pirinen, Haley Abel, Colby Chiang, Robert S. Fulton, Anne Jackson, Chul Joo Kang, Krishna Kanchi, Daniel C. Koboldt, David E. Larson, Joanne O. Nelson, Thomas J. Nicholas, Arto Pietilä, Vasily Ramensky, Debashree Ray, Laura J. Scott, Heather M. Stringham, Jagadish Vangipurapu, Ryan Welch, Pranav Yajnik, Xianyong Yin, Johan G. Eriksson, Mika Ala‐Korpela, Marjo‐Riitta Järvelin, Minna Männikkö, Hannele Laivuori, FinnGen Project, Susan K. Dutcher, Nathan O. Stitziel, Richard K. Wilson, Ira M. Hall, Chiara Sabatti, Aarno Palotie, Veikko Salomaa, Markku Laakso, Samuli Ripatti, Michael Boehnke, Nelson B. Freimer - Nature 2019 cited by 217
