Stephen J. O’Brien
Active 1969–2024
- Also published as
- Stephen J. O'Brien
- 351
- Papers
- 81,354
- Citations
- 153
- h-index
- 348
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology36.9%
- Medicine29%
- Immunology and Microbiology14.5%
- Agricultural and Biological Sciences7%
- Environmental Science5.6%
- Earth and Planetary Sciences2%
- Other5%
Topics
- Genetic diversity and population structure5%
- Genomics and Phylogenetic Studies4.2%
- HIV Research and Treatment3.1%
- Immune Cell Function and Interaction3%
- Genetic and phenotypic traits in livestock2%
- Chromosomal and Genetic Variations2%
- Other80.7%
Coauthors
- Warren E. Johnson51
- Mary Carrington31
- Russell F. Warren27
- James J. Goedert25
- Cheryl A. Winkler24
- Marilyn Menotti‐Raymond23
- Agostinho Antunes22
- Eduardo Eizirik21
- David Vlahov20
- William J. Murphy20
- Michael W. Smith19
- Susan Buchbinder19
- Melody E. Roelke17
- Jill Pecon‐Slattery16
- George W. Nelson15
- Klaus‐Peter Koepfli15
- Thomas L. Wickiewicz14
- Michael Dean13
- Naoya Yuhki13
- David E. Wildt12
- Roger Detels12
- William G. Nash12
- Aleksey Komissarov11
- Carlos A. Driscoll11
All papers
- Whole-genome analyses resolve early branches in the tree of life of modern birds
Authors: Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, Brant C. Faircloth, Benoît Nabholz, Jason T. Howard, Alexander Suh, Claudia Weber, Rute R. da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Liu, Ganesh Ganapathy, Bastien Boussau, Md. Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldón, Salvador Capella-Gutiérrez, Jaime Huerta‐Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Heide Schierup, Bent Erik Kramer Lindow, Wesley C. Warren, David A. Ray, Richard E. Green, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth P. Derryberry, Mads F. Bertelsen, Frederick H. Sheldon, Robb T. Brumfield, Claudio V. Mello, Peter V. Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, José Alfredo Samaniego Castruita, Amhed Missael Vargas Velazquez, Alonzo Alfaro‐Núñez, Paula F. Campos, Bent Petersen, Thomas Sicheritz‐Pontén, An Pas, Tom Bailey, R. Paul Scofield, Michael Bunce, David M. Lambert, Qi Zhou, Polina L. Perelman, Amy C. Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiuemei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnéa Smeds, Frank E. Rheindt, Michael J. Braun, Jon Fjeldså, Ludovic Orlando, F. Keith Barker, Knud A. Jønsson, Warren E. Johnson, Klaus‐Peter Koepfli, Stephen J. O’Brien, David Haussler, Oliver A. Ryder, Carsten Rahbek, Eske Willerslev, Gary R. Graves, Travis C. Glenn, John E. McCormack, David W. Burt, Hans Ellegren, Per Alström, Scott V. Edwards, Alexandros Stamatakis, David P. Mindell, Joël Cracraft and 5 more - Science 2014 cited by 2,049
- Comparative genomics reveals insights into avian genome evolution and adaptation
Authors: Guojie Zhang, Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Ödeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro‐Núñez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas R. Pfenning, Osceola Whitney, Miriam Rivas, Erina Hara, Julia Smith, Marta Farré, Jitendra Narayan, Gancho Slavov, Michael N Romanov, Rui Borges, João Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Federico G. Hoffmann, Juan C. Opazo, Olle Håstad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth P. Derryberry, Wesley C. Warren, Richard K. Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O’Brien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alström, Jon Fjeldså, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang and 39 more - Science 2014 cited by 1,192
- Genetic Restoration of the Florida Panther
Authors: Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, Mark W. Cunningham, Robert C. Belden, Roy McBride, Deborah Jansen, Mark Lotz, David B. Shindle, JoGayle Howard, David E. Wildt, Linda M. Penfold, Jeffrey A. Hostetler, Madan K. Oli, Stephen J. O’Brien - Science 2010 cited by 688
- A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record
Authors: Emma C. Teeling, Mark S. Springer, Ole Madsen, Paul J. J. Bates, Stephen J. O’Brien, William J. Murphy - Science 2005 cited by 1,163
- A Molecular Phylogeny of Living Primates
Authors: Polina L. Perelman, Warren E. Johnson, Christian Roos, Héctor N. Seuánez, Julie E. Horvath, Miguel A. M. Moreira, Bailey Kessing, Joan Pontius, Melody E. Roelke, Y. Rumpler, Maria Paula Cruz Schneider, Artur Silva, Stephen J. O’Brien, Jill Pecon‐Slattery - PLoS Genetics 2011 cited by 1,443
- Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS
Authors: Maureen P. Martin, Xiaojiang Gao, Jeong-Hee Lee, George W. Nelson, Roger Detels, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, John Trowsdale, Michael J. Wilson, Stephen J. O’Brien, Mary Carrington - Nature Genetics 2002 cited by 1,183
- Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1
Authors: Maureen P. Martin, Qi Ying, Xiaojiang Gao, Eriko Yamada, Jeffrey N. Martin, Florencia Pereyra, Sara Colombo, Elizabeth E. Brown, W. Lesley Shupert, John J. Phair, James J. Goedert, Susan Buchbinder, Gregory D. Kirk, Amalio Telenti, Mark Connors, Stephen J. O’Brien, Bruce D. Walker, Peter Parham, Steven G. Deeks, Daniel W. McVicar, Mary Carrington - Nature Genetics 2007 cited by 742
- HLA and NK Cell Inhibitory Receptor Genes in Resolving Hepatitis C Virus Infection
Authors: Salim I. Khakoo, Chloe L. Thio, Maureen P. Martin, Collin Brooks, Xiaojiang Gao, Jacquie Astemborski, Jie Cheng, James J. Goedert, David Vlahov, Margaret W. Hilgartner, S.T. Cox, Ann-Margeret Little, Graeme Alexander, Matthew Cramp, Stephen J. O’Brien, William Rosenberg, David L. Thomas, Mary Carrington - Science 2004 cited by 1,190
- From wild animals to domestic pets, an evolutionary view of domestication
Authors: Carlos A. Driscoll, David W. Macdonald, Stephen J. O’Brien - National Academy of Sciences, Proceedings of the National Academy of Sciences 2009 cited by 637
- Genome-wide signatures of complex introgression and adaptive evolution in the big cats
Authors: Henrique V. Figueiró, Gang Li, Fernanda J. Trindade, Juliana Assis Geraldo, Fabiano Pais, Gabriel da Rocha Fernandes, Sarah Helen Dias dos Santos, Graham M. Hughes, Aleksey Komissarov, Agostinho Antunes, Cristine Silveira Trinca, Maíra R. Rodrigues, Tyler Linderoth, Ke Bi, Leandro Silveira, Fernando César Cascelli de Azevedo, Daniel Luis Zanella Kantek, Emiliano Esterci Ramalho, Ricardo Augusto Brassaloti, Priscilla Marqui Schmidt Villela, Adauto Luís Veloso Nunes, Rodrigo Hidalgo Friciello Teixeira, Ronaldo Gonçalves Morato, Damian Loska, Patricia Saragüeta, Toni Gabaldón, Emma C. Teeling, Stephen J. O’Brien, Rasmus Nielsen, Luiz Lehmann Coutinho, Guilherme Oliveira, William J. Murphy, Eduardo Eizirik - Science Advances 2017 cited by 200
- HLAand HIV-1: Heterozygote Advantage andB*35-Cw*04Disadvantage
Authors: Mary Carrington, George W. Nelson, Maureen P. Martin, Teri L. Kissner, David Vlahov, James J. Goedert, Richard A. Kaslow, Susan Buchbinder, Keith Hoots, Stephen J. O’Brien - Science 1999 cited by 1,227
- Puma genomes from North and South America provide insights into the genomic consequences of inbreeding
Authors: Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, H. J. M. Milne, Stephen J. O’Brien, Brendan L. O’Connell, David P. Onorato, Seth P. D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell Corbett‐Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro - Nature Communications 2019 cited by 142
- Genetic Restriction of HIV-1 Infection and Progression to AIDS by a Deletion Allele of the CKR5 Structural Gene
Authors: Michael Dean, Mary Carrington, Cheryl A. Winkler, Gavin Huttley, Michael W. Smith, Rando Allikmets, James J. Goedert, Susan Buchbinder, Eric Vittinghoff, Edward D. Gomperts, Sharyne Donfield, David Vlahov, Richard A. Kaslow, Alfred J. Saah, Charles R. Rinaldo, Roger Detels, Stephen J. O’Brien - Science 1996 cited by 2,503
- The Near Eastern Origin of Cat Domestication
Authors: Carlos A. Driscoll, Marilyn Menotti‐Raymond, Alfred L. Roca, Karsten Hupe, Warren E. Johnson, Eli Geffen, Eric H. Harley, Miguel Delibes, Dominique Pontier, Andrew C. Kitchener, Nobuyuki Yamaguchi, Stephen J. O’Brien, David W. Macdonald - Science 2007 cited by 569
- Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
Authors: Michael J. Montague, Gang Li, Barbara Gandolfi, Razib Khan, Bronwen Aken, S. Searle, Patrick Minx, LaDeana Hillier, Daniel C. Koboldt, Brian W. Davis, Carlos A. Driscoll, Christina S. Barr, Kevin Blackistone, Javier Quilez, Belén Lorente-Galdós, Tomàs Marquès‐Bonet, Can Alkan, Gregg W.C. Thomas, Matthew W. Hahn, Marilyn Menotti‐Raymond, Stephen J. O’Brien, Richard K. Wilson, Leslie A. Lyons, William J. Murphy, Wesley C. Warren - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 360
- Minke whale genome and aquatic adaptation in cetaceans
Authors: Hyung‐Soon Yim, Yun Sung Cho, Xuanmin Guang, Sung Gyun Kang, Jae-Yeon Jeong, Sun‐Shin Cha, Hyun‐Myung Oh, Jae‐Hak Lee, Eun Chan Yang, Kae Kyoung Kwon, Yun Jae Kim, Tae‐Wan Kim, Wonduck Kim, Jeong Ho Jeon, Sang‐Jin Kim, Dong Han Choi, Sungwoong Jho, Hak‐Min Kim, Junsu Ko, Hyunmin Kim, Young-Ah Shin, Hyun-Ju Jung, Yuan Zheng, Zhuo Wang, Yan Chen, Ming Chen, Awei Jiang, Erli Li, Shu Zhang, Haolong Hou, Tae‐Hyung Kim, Lili Yu, Sha Liu, Kung Ahn, Jesse Cooper, Sin-Gi Park, Chang Pyo Hong, Wook Jin, Heui‐Soo Kim, Chankyu Park, Kyooyeol Lee, Sung Chun, Phillip A. Morin, Stephen J. O’Brien, Hang Lee, Jumpei M. Kimura, Dae Yeon Moon, Andrea Manica, Jeremy S. Edwards, Byung Chul Kim, Sangsoo Kim, Jun Wang, Jong Bhak, Hyun Sook Lee, Jung‐Hyun Lee - Nature Genetics 2013 cited by 295
- Identification of an Amplified, Highly Expressed Gene in a Human Glioma
Authors: Kenneth W. Kinzler, Sandra H. Bigner, Darell D. Bigner, Jeffrey M. Trent, M L Law, Stephen J. O’Brien, Albert J. Wong, Bert Vogelstein - Science 1987 cited by 684
- Genome-wide scans for footprints of natural selection
Authors: Tarás K. Oleksyk, Michael W. Smith, Stephen J. O’Brien - Philosophical Transactions of the Royal Society B Biological Sciences 2009 cited by 355
- Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
Authors: Soonok Kim, Yun Sung Cho, Hak‐Min Kim, Oksung Chung, Hyunho Kim, Sungwoong Jho, Hong Seomun, Jeongho Kim, Woo Young Bang, Changmu Kim, Junghwa An, Chang‐Hwan Bae, Youngjune Bhak, Sungwon Jeon, Yoon Hyejun, Yumi Kim, JeHoon Jun, Hye-Jin Lee, Suan Cho, Olga Uphyrkina, А.В. Костыря, J. Marc Goodrich, Dale G. Miquelle, Melody E. Roelke, John Lewis, Andrey A. Yurchenko, Anton Bankevich, Juok Cho, Semin Lee, Jeremy S. Edwards, Jessica A. Weber, Cook Jo, Sangsoo Kim, Hang Lee, Andrea Manica, Lee Ilbeum, Stephen J. O’Brien, Jong Bhak, Joo‐Hong Yeo - Genome biology 2016 cited by 150
- halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
Authors: Ksenia Krasheninnikova, Mark Diekhans, Joel Armstrong, Aleksei Dievskii, Benedict Paten, Stephen J. O’Brien - GigaScience 2020 cited by 34
- Accounting for multiple comparisons in a genome-wide association study (GWAS)
Authors: Randall C. Johnson, George W. Nelson, Jennifer L. Troyer, James A. Lautenberger, Bailey Kessing, Cheryl A. Winkler, Stephen J. O’Brien - BMC Genomics 2010 cited by 341
- Application of Machine Learning Algorithms to Predict Clinically Meaningful Improvement After Arthroscopic Anterior Cruciate Ligament Reconstruction
Authors: Kyle N. Kunze, Evan M. Polce, Anil S. Ranawat, Per‐Henrik Randsborg, Riley J. Williams, Answorth A. Allen, Benedict U. Nwachukwu, HSS ACL Registry Group, Andrew D. Pearle, Beth Shubin Stein, David M. Dines, Anne M. Kelly, Bryan T. Kelly, Howard A. Rose, Michael J. Maynard, Sabrina M. Strickland, Struan H. Coleman, Jo A. Hannafin, John D. MacGillivray, Robert G. Marx, Russell F. Warren, Scott A. Rodeo, Stephen Fealy, Stephen J. O’Brien, Thomas L. Wickiewicz, Joshua S. Dines, Frank A. Cordasco, David Altcheck - Orthopaedic Journal of Sports Medicine 2021 cited by 45
- Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics
Authors: William J. Murphy, Eduardo Eizirik, Stephen J. O’Brien, Ole Madsen, Mark Scally, Christophe J. Douady, Emma C. Teeling, Oliver A. Ryder, Michael J. Stanhope, Wilfried W. de Jong, Mark S. Springer - Science 2001 cited by 1,307
- Influence of combinations of human major histocompatibility complex genes on the course of HIV–1 infection
Authors: Richard A. Kaslow, Mary Carrington, R. Apple, L. Park, Álvaro Muñoz, Alfred J. Saah, James J. Goedert, Cheryl A. Winkler, Stephen J. O’Brien, Charles R. Rinaldo, Roger Detels, William A. Blattner, John J. Phair, H. Erlich, Douglas L. Mann - Nature Medicine 1996 cited by 966
