Eric Haugen
Active 1999–2024
- 40
- Papers
- 20,773
- Citations
- 39
- h-index
- 40
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology75%
- Medicine12.1%
- Agricultural and Biological Sciences4.2%
- Immunology and Microbiology3.1%
- Neuroscience2.2%
- Environmental Science0.9%
- Other2.5%
Topics
- Genomics and Chromatin Dynamics8.6%
- Epigenetics and DNA Methylation4.4%
- RNA Research and Splicing4%
- RNA modifications and cancer3.7%
- Genomics and Phylogenetic Studies3.4%
- RNA and protein synthesis mechanisms3.3%
- Other72.6%
Coauthors
- Rajinder Kaul14
- J Stamatoyannopoulos13
- Richard Sandstrom12
- Alex Reynolds10
- Daniel Bates10
- Eric Rynes10
- Jeff Vierstra10
- Robert E. Thurman10
- Audra Johnson9
- Morgan Diegel9
- Andrew B. Stergachis7
- Kristen Lee7
- Shane Neph7
- Yang Zhou7
- Douglas Dunn6
- Fidencio Neri6
- Hillary S. Hayden6
- Matthew T. Maurano6
- Richard Humbert6
- Benjamin Vernot5
- Erika Giste5
- Jean Chang5
- Michael A. Jacobs5
- Peter J. Sabo5
All papers
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Authors: Matthew T. Maurano, Richard Humbert, Eric Rynes, Robert E. Thurman, Eric Haugen, Hao Wang, Alex Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer A. Brody, Anthony Shafer, Fidencio Neri, Kristen Lee, Tanya Kutyavin, Sandra Stehling-Sun, Audra Johnson, Theresa K. Canfield, Erika Giste, Morgan Diegel, Daniel Bates, R. Scott Hansen, Shane Neph, Peter J. Sabo, Shelly Heimfeld, Antony Raubitschek, Steven F. Ziegler, Chris Cotsapas, Nona Sotoodehnia, Ian A. Glass, Shamil Sunyaev, Rajinder Kaul, J Stamatoyannopoulos - Science 2012 cited by 4,097
- BEDOPS: high-performance genomic feature operations
Authors: Shane J. Neph, Scott Kuehn, Alex P. Reynolds, Eric Haugen, Robert E. Thurman, Audra K. Johnson, Eric Rynes, Matthew T. Maurano, Jeff Vierstra, Sean Thomas, Richard S. Sandstrom, Richard Humbert, John A. Stamatoyannopoulos - Bioinformatics, Bioinform. 2012 cited by 1,179
- A comparative encyclopedia of DNA elements in the mouse genome
Authors: Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Wei-Sheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie Davis, Benjamin D. Pope, Yin Shen, Dmitri D. Pervouchine, Sarah Djebali, Robert E. Thurman, Rajinder Kaul, Eric Rynes, Anthony Kirilusha, Georgi K. Marinov, Brian A. Williams, Diane Trout, Henry Amrhein, Katherine Fisher-Aylor, Igor Antoshechkin, Gilberto DeSalvo, Lei-Hoon See, Meagan Fastuca, Jörg Drenkow, Chris Zaleski, Alexander Dobin, Pablo Prieto, Julien Lagarde, Giovanni Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. A. Bender, Miaohua Zhang, Rachel Byron, Mark Groudine, David McCleary, Long Pham, Zhen Ye, Samantha Kuan, Lee Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, Manolis Kellis, Cheryl A. Keller, Christapher S. Morrissey, Tejaswini Mishra, Deepti Jain, Nergiz Doğan, Robert S. Harris, Philip Cayting, Trupti Kawli, Alan P. Boyle, Ghia Euskirchen, Anshul Kundaje, Shin Lin, Yiing Lin, Camden Jansen, Venkat S. Malladi, Melissa Cline, Drew T. Erickson, Vanessa M. Kirkup, Katrina Learned, Cricket A. Sloan, Kate R. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn Beal, Miguel Pignatelli, Paul Flicek, Jin Lian, Tamer Kahveci, Dongwon Lee, W. James Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Theresa K. Canfield, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Erika Giste, Anthony Shafer, Tanya Kutyavin, Eric Haugen, Douglas Dunn, Alex Reynolds, Shane Neph, Richard Humbert, R. Scott Hansen, Marella de Bruijn and 37 more - Nature 2014 cited by 1,949
- The accessible chromatin landscape of the human genome
Authors: Robert E. Thurman, Eric Rynes, Richard Humbert, Jeff Vierstra, Matthew T. Maurano, Eric Haugen, Nathan C. Sheffield, Andrew B. Stergachis, Hao Wang, Benjamin Vernot, Kavita S. Garg, Sam John, Richard Sandstrom, Daniel Bates, Lisa Boatman, Theresa K. Canfield, Morgan Diegel, Douglas Dunn, Abigail K. Ebersol, Tristan Frum, Erika Giste, Audra Johnson, Ericka M. Johnson, Tanya Kutyavin, Bryan R. Lajoie, Bum-Kyu Lee, Kristen Lee, Darin London, Dimitra M. Lotakis, Shane Neph, Fidencio Neri, Éric Nguyen, Hongzhu Qu, Alex Reynolds, Vaughn Roach, Alexias Safi, Minerva E. Sanchez, Amartya Sanyal, Anthony Shafer, Jeremy M. Simon, Lingyun Song, Shinny Vong, Molly Weaver, Yongqi Yan, Zhancheng Zhang, Zhuzhu Zhang, Boris Lenhard, Muneesh Tewari, Michael O. Dorschner, R. Scott Hansen, Patrick A. Navas, George Stamatoyannopoulos, Vishwanath R. Iyer, Jason D. Lieb, Shamil Sunyaev, Joshua M. Akey, Peter J. Sabo, Rajinder Kaul, Terrence S. Furey, Job Dekker, Gregory E. Crawford, J Stamatoyannopoulos - Nature 2012 cited by 2,935
- Global reference mapping of human transcription factor footprints
Authors: Jeff Vierstra, John Lazar, Richard Sandstrom, Jessica Halow, Kristen Lee, Daniel Bates, Morgan Diegel, Douglas Dunn, Fidencio Neri, Eric Haugen, Eric Rynes, Alex Reynolds, Jemma Nelson, Audra Johnson, Mark Frerker, Michael Buckley, Rajinder Kaul, Wouter Meuleman, J Stamatoyannopoulos - Nature 2020 cited by 447
- Index and biological spectrum of human DNase I hypersensitive sites
Authors: Wouter Meuleman, Alexander Muratov, Eric Rynes, Jessica Halow, Kristen Lee, Daniel Bates, Morgan Diegel, Douglas Dunn, Fidencio Neri, Athanasios Teodosiadis, Alex Reynolds, Eric Haugen, Jemma Nelson, Audra Johnson, Mark Frerker, Michael Buckley, Richard Sandstrom, Jeff Vierstra, Rajinder Kaul, J Stamatoyannopoulos - Nature 2020 cited by 366
- Single-molecule regulatory architectures captured by chromatin fiber sequencing
Authors: Andrew B. Stergachis, Brian Debo, Eric Haugen, L. Stirling Churchman, J Stamatoyannopoulos - Science 2020 cited by 267
- The Human Mitochondrial Transcriptome
Authors: Tim R. Mercer, Shane Neph, Marcel E. Dinger, Joanna Crawford, Martin A. Smith, Anne-Marie J. Shearwood, Eric Haugen, Cameron P. Bracken, Oliver Rackham, J Stamatoyannopoulos, Aleksandra Filipovska, John S. Mattick - Cell 2011 cited by 975
- Comprehensive transposon mutant library of Pseudomonas aeruginosa
Authors: Michael A. Jacobs, Ashley Alwood, Iyarit Thaipisuttikul, David H. Spencer, Eric Haugen, Stephen A. Ernst, Oliver Will, Rajinder Kaul, Christopher K. Raymond, Ruth Levy, Chunrong Liu, Donald Guenthner, Donald Bovee, Maynard V. Olson, Colin Manoil - National Academy of Sciences, Proceedings of the National Academy of Sciences 2003 cited by 1,143
- An expansive human regulatory lexicon encoded in transcription factor footprints
Authors: Shane Neph, Jeff Vierstra, Andrew B. Stergachis, Alex Reynolds, Eric Haugen, Benjamin Vernot, Robert E. Thurman, Sam John, Richard Sandstrom, Audra Johnson, Matthew T. Maurano, Richard Humbert, Eric Rynes, Hao Wang, Shinny Vong, Kristen Lee, Daniel Bates, Morgan Diegel, Vaughn Roach, Douglas Dunn, Jun Neri, Anthony Schafer, R. Scott Hansen, Tanya Kutyavin, Erika Giste, Molly Weaver, Theresa K. Canfield, Peter J. Sabo, Miaohua Zhang, Gayathri Balasundaram, Rachel Byron, Michael J. MacCoss, Joshua M. Akey, M. A. Bender, Mark Groudine, Rajinder Kaul, J Stamatoyannopoulos - Nature 2012 cited by 809
- Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Authors: Jeff Vierstra, Eric Rynes, Richard Sandstrom, Miaohua Zhang, Theresa K. Canfield, R. Scott Hansen, Sandra Stehling-Sun, Peter J. Sabo, Rachel Byron, Richard Humbert, Robert E. Thurman, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Erika Giste, Eric Haugen, Douglas Dunn, Matthew S. Wilken, Steven Z. Josefowicz, Robert Samstein, Kai‐Hsin Chang, Evan E. Eichler, Marella de Bruijn, Thomas A. Reh, Arthur I. Skoultchi, Alexander Y. Rudensky, Stuart H. Orkin, Thalia Papayannopoulou, Piper M. Treuting, Licia Selleri, Rajinder Kaul, Mark Groudine, M. A. Bender, J Stamatoyannopoulos - Science 2014 cited by 296
- Fine-scale structural variation of the human genome
Authors: Eray Tüzün, Andrew J. Sharp, Jeffrey A. Bailey, Rajinder Kaul, Victoria Morrison, L.M. Pertz, Eric Haugen, Hillary S. Hayden, Donna G. Albertson, Daniel Pinkel, Maynard V. Olson, Evan E. Eichler - Nature Genetics 2005 cited by 1,006
- Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
Authors: Matthew T. Maurano, Eric Haugen, Richard Sandstrom, Jeff Vierstra, Anthony Shafer, Rajinder Kaul, J Stamatoyannopoulos - Nature Genetics 2015 cited by 252
- Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana
Authors: Alessandra M. Sullivan, Andrej A. Arsovski, Janne Lempe, Kerry L. Bubb, Matthew T. Weirauch, Peter J. Sabo, Richard Sandstrom, Robert E. Thurman, Shane Neph, Alex Reynolds, Andrew B. Stergachis, Benjamin Vernot, Audra Johnson, Eric Haugen, Shawn Sullivan, Agnieszka Thompson, Fidencio V. Neri, Molly Weaver, Morgan Diegel, Sanié Mnaimneh, Ally Yang, Timothy Hughes, Jennifer L. Nemhauser, Christine Queitsch, J Stamatoyannopoulos - Cell Reports 2014 cited by 294
- Polymyxin Resistance of Pseudomonas aeruginosa phoQ Mutants Is Dependent on Additional Two-Component Regulatory Systems
Authors: Alina D. Gutu, Nicole Sgambati, Pnina Strasbourger, Mark K. Brannon, Michael A. Jacobs, Eric Haugen, Rajinder Kaul, Helle Krogh Johansen, Niels Høiby, Samuel M. Moskowitz - Antimicrobial Agents and Chemotherapy 2013 cited by 134
- Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations
Authors: Charles E. Breeze, Eric Haugen, Alex Reynolds, Andrew E. Teschendorff, Jenny van Dongen, Qing Lan, Nathaniel Rothman, Guillaume Bourque, Ian Dunham, Stephan Beck, J Stamatoyannopoulos, Nora Franceschini, Sonja I. Berndt - Genome biology 2022 cited by 54
- Mapping and sequencing of structural variation from eight human genomes
Authors: Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy F. Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tüzün, Ze Cheng, Heather Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David J. Saranga, Adrianne B. Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael O. Dorschner, J Stamatoyannopoulos, David A. Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler - Nature 2008 cited by 1,154
- Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
Authors: Andrew B. Stergachis, Shane Neph, Alex Reynolds, Richard Humbert, Brady Miller, Sharon L. Paige, Benjamin Vernot, Jeffrey B. Cheng, Robert E. Thurman, Richard Sandstrom, Eric Haugen, Shelly Heimfeld, Charles E. Murry, Joshua M. Akey, J Stamatoyannopoulos - Cell 2013 cited by 371
- Genetic effects on gene expression across human tissues
Authors: Eric Haugen, Yuan He, Lin Chen, Emmanouil T. Dermitzakis, Philip A. Branton, Andrew B. Nobel, YoSon Park, Jeffrey A. McLean, Fidencio Neri, David E. Tabor, Ashis Saha, Leslie H. Sobin, Jennifer A. Doherty, Kate R. Rosenbloom, Jie Quan, Benjamin J. Strober, Yaping Liu, Dana R. Valley, Omer Basha, Ruth Barshir, Casandra A. Trowbridge, Ayellet V. Segrè, Andrew D. Skol, Ellen Karasik, Jason Bridge, Wm. Kent, Colby Chiang, Farhan N. Damani, Konrad J. Karczewski, Mary E. Barcus, Meritxell Oliva, Panagiotis Papasaikas, Jemma Nelson, Caroline Linke, Benedict Paten, Ellen Gelfand, Jingchun Zhu, Fred A. Wright, Kevin S. Smith, Jessica Halow, Sarah Kim-Hellmuth, Michael F. Salvatore, Steven Hunter, Michael S. Noble, Mary J. Goldman, Duyen Y. Nguyen, Shilpi Singh, Daniel C. Rohrer, Nancy J. Cox, Peter F. Hickey, Alexis Battle, Melina Claussnitzer, Benoit Molinié, François Aguet, Brunilda Balliu, Jeffrey A. Thomas, Farhad Hormozdiari, Lei Hou, Rajinder Kaul, Christine B. Peterson, W. Marston Linehan, Laura K. Barker, Christopher Brown, Ping Guan, Kristen Lee, Michael J. Gloudemans, Stephan Ripke, Michael T. Moser, Manuel Muñoz-Aguirre, Maximilian Haeussler, Negin Vatanian, Ariel DH Gewirtz, Stephane E. Castel, Jean Monlong, Alexandra J. Scott, J Stamatoyannopoulos, Magali Ruffier, Zachary Zappala, Xiao Li, Pedro G. Ferreira, Concepcion R. Nierras, Esti Yeger‐Lotem, Xiaoquan Wen, Jeffery P. Struewing, Olivier Delaneau, Taru Tukiainen, M. Tomaszewski, Brian Jo, Yong‐Jin Park, Casey Martin, Gireesh K. Bogu, Brandon L. Pierce, Yi‐Hui Zhou, Eleazar Eskin, Ferrán Reverter, Roderic Guigó, Nicole A. Teran, Monkol Lek, William F. Leinweber, Kristin Ardlie and 145 more - 2020 cited by 62
- Exonic Transcription Factor Binding Directs Codon Choice and Affects Protein Evolution
Authors: Andrew B. Stergachis, Eric Haugen, Anthony Shafer, Wenqing Fu, Benjamin Vernot, Alex Reynolds, Anthony Raubitschek, Steven F. Ziegler, Emily M LeProust, Joshua M. Akey, J Stamatoyannopoulos - Science 2013 cited by 293
- The DNA sequence and biological annotation of human chromosome 1
Authors: Simon G. Gregory, K. F. Barlow, K. E. McLay, Rajinder Kaul, David Swarbreck, Andrew Dunham, Carol Scott, Kevin Howe, Kathryn Woodfine, Chris C.A. Spencer, Matthew C. Jones, Christopher Gillson, S. Searle, Yang Zhou, Felix Kokocinski, Louise McDonald, Richard S. Evans, K. Phillips, Alexandre Atkinson, Rachel Cooper, C. Jones, R. E. Hall, T. Daniel Andrews, Christine Lloyd, R. Ainscough, J. P. Almeida, K. D. Ambrose, Frank E. Anderson, Rob Andrew, R. I. S. Ashwell, K. Aubin, Anne Babbage, C. L. Bagguley, J. Bailey, Helen Beasley, Graeme Bethel, Christine Bird, S. Bray-Allen, J. Y. Brown, Andrew J. Brown, Danielle Buckley, J.H. Burton, Jacqueline M. Bye, C. Carder, J. C. Chapman, S. Y. Clark, Geraldine M Clarke, Christopher Clee, V. Cobley, R. E. Collier, N. Corby, G. J. Coville, J. Davies, Rebecca Deadman, Matthew Dunn, M. E. Earthrowl, Andrew Ellington, Helen Errington, Adam Frankish, J. D. Frankland, Lisa French, P. Garner, J. Garnett, Laurène Gay, Mohammed Ghori, Richard Gibson, L. M. Gilby, Will Gillett, Rebecca Glithero, Darren Grafham, Chris Griffiths, Sam Griffiths‐Jones, Russell Grocock, S. Austin Hammond, E. S. I. Harrison, Elizabeth A. Hart, Eric Haugen, P. D. Heath, S. Holmes, Karen Holt, Philip Howden, Adrienne Hunt, Sarah Hunt, Glenn C. Hunter, J. Isherwood, Richard James, Christopher M. Johnson, David J. Johnson, A. A. Joy, Mike Kay, J. K. Kershaw, Miho Kibukawa, A. M. Kimberley, Andrew King, Andrew Knights, Heena V. Lad, Gavin K. Laird, Stephanie Lawlor, Daniel Leongamornlert, David Lloyd and 66 more - Nature 2006 cited by 258
- Conservation of trans-acting circuitry during mammalian regulatory evolution
Authors: Andrew B. Stergachis, Shane Neph, Richard Sandstrom, Eric Haugen, Alex Reynolds, Miaohua Zhang, Rachel Byron, Theresa K. Canfield, Sandra Stelhing-Sun, Kristen Lee, Robert E. Thurman, Shinny Vong, Daniel Bates, Fidencio Neri, Morgan Diegel, Erika Giste, Douglas Dunn, Jeff Vierstra, R. Scott Hansen, Audra Johnson, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Piper M. Treuting, Rajinder Kaul, Mark Groudine, M. A. Bender, Elhanan Borenstein, J Stamatoyannopoulos - Nature 2014 cited by 233
- 52 Genetic Loci Influencing Myocardial Mass
Authors: Pim van der Harst, Jessica van Setten, Niek Verweij, Georg Vogler, Lude Franke, Matthew T. Maurano, Xinchen Wang, Irene Mateo Leach, Mark Eijgelsheim, Nona Sotoodehnia, Caroline Hayward, Rossella Sorice, Osorio Meirelles, Leo‐Pekka Lyytikäinen, Ozren Polašek, Toshiko Tanaka, Dan E. Arking, Sheila Ulivi, Stella Trompet, Martina Müller‐Nurasyid, Albert V. Smith, Marcus Dörr, Kathleen F. Kerr, Jared W. Magnani, Fabiola Del Greco M, Weihua Zhang, Ilja M. Nolte, Claudia Silva, Sandosh Padmanabhan, Vinicius Tragante, Tõnu Esko, Gonçalo R. Abecasis, Michiel Adriaens, Karl Andersen, Phil Barnett, Joshua C. Bis, Rolf Bodmer, Brendan M. Buckley, Harry Campbell, Megan V. Cannon, Aravinda Chakravarti, Lin Y. Chen, Alessandro Delitala, Richard B. Devereux, Pieter A. Doevendans, Anna F. Dominiczak, Luigi Ferrucci, Ian Ford, Christian Gieger, Tamara B. Harris, Eric Haugen, Matthias Heinig, Dena Hernandez, Hans L. Hillege, Joel N. Hirschhorn, Albert Hofman, Norbert Hübner, Shih-Jen Hwang, Annamaria Iorio, Mika Kähönen, Manolis Kellis, Ivana Kolčić, Ishminder K. Kooner, Jaspal S. Kooner, Jan A. Kors, Edward G. Lakatta, Kasper Lage, Lenore J. Launer, Daniel Levy, Alicia Lundby, Peter W. Macfarlane, Dalit May, Thomas Meitinger, Andres Metspalu, Stefania Nappo, Silvia Naitza, Shane Neph, Alex S. Nord, Teresa Nutile, Peter M. Okin, Jesper V. Olsen, Ben A. Oostra, Josef Penninger, L Pennacchio, Tune H. Pers, Siegfried Perz, Annette Peters, Yigal M. Pinto, Arne Pfeufer, Maria Grazia Pilia, Peter P. Pramstaller, Bram P. Prins, Olli T. Raitakari, Soumya Raychaudhuri, Kenneth Rice, Elizabeth J. Rossin, Jerome I. Rotter, Sebastian Schäfer, David Schlessinger, Carsten Oliver Schmidt and 60 more - Journal of the American College of Cardiology 2016 cited by 135
- Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study
Authors: Miguel I. Paredes, Stephanie M. Lunn, Michael Famulare, Lauren Frisbie, Ian Painter, Roy Burstein, Pavitra Roychoudhury, Hong Xie, Shah A. Mohamed Bakhash, Ricardo Perez, Maria E Lukes, Sean Ellis, Saraswathi Sathees, Patrick C. Mathias, Alexander L. Greninger, Lea M. Starita, Chris Frazar, Erica Ryke, Weizhi Zhong, Luis Fernando Gamboa, Machiko Threlkeld, Jover Lee, Evan McDermot, Melissa Truong, Deborah A. Nickerson, Daniel Bates, Matthew E. Hartman, Eric Haugen, Truong N. Nguyen, Joshua D. Richards, Jacob L. Rodriguez, J Stamatoyannopoulos, Eric Thorland, Geoff Melly, Philip Dykema, Drew MacKellar, Hannah K. Gray, Avi Singh, JohnAric M. Peterson, Denny Russell, Laura Marcela Torres, Scott Lindquist, Trevor Bedford, Krisandra Allen, Hanna N. Oltean - Clinical Infectious Diseases 2022 cited by 80
