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Fernando Vargas

Active 2000–2024

40
Papers
31,593
Citations
29
h-index
38
i10-index

Citations

Citations per year for Fernando Vargas1976: 1 citations1990: 1 citations1992: 1 citations1996: 1 citations2001: 2 citations2002: 1 citations2004: 1 citations2005: 1 citations2006: 3 citations2007: 1 citations2008: 1 citations2010: 1 citations2011: 2 citations2012: 1 citations2013: 2 citations2017: 1 citations2018: 10 citations2019: 230 citations2020: 1,008 citations2021: 1,561 citations2022: 1,505 citations2023: 1,196 citations2024: 2,052 citations2025: 877 citations2026: 18 citations1977–1989: no citations, so these years are not shown1991: no citations, so this year is not shown1993–1995: no citations, so these years are not shown1997–2000: no citations, so these years are not shown2003: no citations, so this year is not shown2009: no citations, so this year is not shown2014–2016: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,675 citing papers, 21.2% of this breakdownChina: 2,222 citing papers, 17.6% of this breakdownGermany: 584 citing papers, 4.6% of this breakdownUnited Kingdom: 489 citing papers, 3.9% of this breakdownCanada: 483 citing papers, 3.8% of this breakdownItaly: 448 citing papers, 3.5% of this breakdownJapan: 384 citing papers, 3% of this breakdownAustralia: 383 citing papers, 3% of this breakdownSpain: 377 citing papers, 3% of this breakdownFrance: 329 citing papers, 2.6% of this breakdownNetherlands: 313 citing papers, 2.5% of this breakdownSouth Korea: 302 citing papers, 2.4% of this breakdown
0%21.2%Other 28.9%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology44.2%
  • Medicine16.7%
  • Environmental Science13.8%
  • Agricultural and Biological Sciences12.3%
  • Immunology and Microbiology4.1%
  • Dentistry2.1%
  • Other6.8%

Topics

  • Gut microbiota and health18.3%
  • Microbial Community Ecology and Physiology4.3%
  • Clostridium difficile and Clostridium perfringens research3.1%
  • Probiotics and Fermented Foods2.8%
  • Diet and metabolism studies2.7%
  • Metabolomics and Mass Spectrometry Studies2.6%
  • Other66.2%

Coauthors

All papers

Open in search
  1. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Authors: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo Silva, Christian Diener, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters and 12 more - Nature Biotechnology 2019 cited by 24,006

  2. Global chemical effects of the microbiome include new bile-acid conjugations

    Authors: Robert A. Quinn, Alexey V. Melnik, Alison Vrbanac, Ting Fu, Kathryn A. Patras, Mitchell P. Christy, Zsolt Bodai, Pedro Belda‐Ferre, Anupriya Tripathi, Lawton K. Chung, Michael Downes, Ryan D. Welch, Melissa A. Quinn, Greg Humphrey, Morgan Panitchpakdi, Kelly C. Weldon, Alexander A. Aksenov, Ricardo Silva, Julián Ávila-Pacheco, Clary B. Clish, Sena Bae, Himel Mallick, Eric A. Franzosa, Jason Lloyd‐Price, Robert H. Bussell, Taren Thron, Andrew T. Nelson, Mingxun Wang, Eric C. Leszczynski, Fernando Vargas, Julia M. Gauglitz, Michael J. Meehan, Emily C. Gentry, Timothy D. Arthur, Alexis C. Komor, Orit Poulsen, Brigid S. Boland, John T. Chang, William J. Sandborn, Meerana Lim, Neha Garg, Julie C. Lumeng, Ramnik J. Xavier, Barbara I. Kazmierczak, Ruchi Jain, Marie E. Egan, Kyung E. Rhee, David P. Ferguson, Manuela Raffatellu, Hera Vlamakis, Gabriel G. Haddad, Dionicio Siegel, Curtis Huttenhower, Sarkis K. Mazmanian, Ronald M. Evans, Victor Nizet, Rob Knight, Pieter C. Dorrestein - Nature 2020 cited by 600

  3. Reproducible molecular networking of untargeted mass spectrometry data using GNPS

    Authors: Allegra T. Aron, Emily C. Gentry, Kerry L. McPhail, Louis‐Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M. Gauglitz, Nicole Sikora, Fernando Vargas, Justin J. J. van der Hooft, Madeleine Ernst, Kyo Bin Kang, Christine M. Aceves, Andrés Mauricio Caraballo‐Rodríguez, Irina Koester, Kelly C. Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M. Tehan, Cristopher A. Boya P., Christian Martin, Marcelino Gutiérrez, Aldo Moreno‐Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey‐Beitia, Víctor Vásquez-Chaves, Yilue Zhang, Ángela I. Calderón, Nicole Tayler, Robert A. Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A. Aksenov, Alan K. Jarmusch, Robin Schmid, Andrew W. Truman, Nuno Bandeira, Mingxun Wang, Pieter C. Dorrestein - Nature Protocols 2020 cited by 703

  4. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Authors: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo J.N. Bettencourt da Silva, Christian Diener, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters and 12 more - Nature Biotechnology 2019 cited by 874

  5. Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

    Authors: Robin Schmid, Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia‐Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K. Jarmusch, Andrés Mauricio Caraballo‐Rodríguez, Kelly C. Weldon, Mélissa Nothias-Esposito, Alexander A. Aksenov, Anelize Bauermeister, Andrea G. Albarracín Orio, Carlismari O. Grundmann, Fernando Vargas, Irina Koester, Julia M. Gauglitz, Emily C. Gentry, Yannick Hövelmann, Svetlana A. Kalinina, Matthew A. Pendergraft, Morgan Panitchpakdi, Richard M. Tehan, Audrey Le Gouëllec, Gajender Aleti, Helena Mannochio-Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A. Prather, Lihini I. Aluwihare, Sebastian Böcker, Kerry L. McPhail, Hans‐Ulrich Humpf, Uwe Kärst, Pieter C. Dorrestein - Nature Communications 2021 cited by 319

  6. Mass spectrometry searches using MASST

    Authors: Mingxun Wang, Alan K. Jarmusch, Fernando Vargas, Alexander A. Aksenov, Julia M. Gauglitz, Kelly C. Weldon, Daniel Petras, Ricardo Silva, Robert A. Quinn, Alexey V. Melnik, Justin J. J. van der Hooft, Andrés Mauricio Caraballo‐Rodríguez, Louis‐Félix Nothias, Christine M. Aceves, Morgan Panitchpakdi, Elizabeth A. R. Brown, Francesca Di Ottavio, Nicole Sikora, Emmanuel O. Elijah, Lara Labarta-Bajo, Emily C. Gentry, Shabnam Shalapour, Kathleen E. Kyle, Sara P. Puckett, Jeramie D. Watrous, Carolina S. Carpenter, Amina Bouslimani, Madeleine Ernst, Austin D. Swafford, Elina I. Zúñiga, Marcy J. Balunas, Jonathan L. Klassen, Rohit Loomba, Rob Knight, Nuno Bandeira, Pieter C. Dorrestein - Nature Biotechnology 2020 cited by 296

  7. Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression

    Authors: Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Zech Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L. McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Ming‐Xiao He, Shipei Xing, Fernando Vargas, Ruth T. Yu, Annette R. Atkins, Christopher Liddle, Janelle S. Ayres, Manuela Raffatellu, Pieter C. Dorrestein, Michael Downes, Rob Knight, Ronald M. Evans - Cell Reports 2023 cited by 78

  8. Database-independent molecular formula annotation using Gibbs sampling through ZODIAC

    Authors: Marcus Ludwig, Louis-Félix Nothias, Kai Dührkop, Irina Koester, Markus Fleischauer, Martin A. Hoffmann, Daniel Petras, Fernando Vargas, Mustafa Morsy, Lihini Aluwihare, Pieter C. Dorrestein, Sebastian Böcker - Nature Machine Intelligence, Nat. Mach. Intell. 2020 cited by 222

  9. ReDU: a framework to find and reanalyze public mass spectrometry data

    Authors: Alan K. Jarmusch, Mingxun Wang, Christine M. Aceves, Rohit S. Advani, Shaden Aguirre, Alexander A. Aksenov, Gajender Aleti, Allegra T. Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andrés Mauricio Caraballo‐Rodríguez, Rama Chaar, Roxana Coras, Emmanuel O. Elijah, Madeleine Ernst, Julia M. Gauglitz, Emily C. Gentry, Makhai Husband, Scott A. Jarmusch, Kenneth Lyons Jones, Zdeněk Kameník, Audrey Le Gouëllec, Aileen Lu, Laura‐Isobel McCall, Kerry L. McPhail, Michael J. Meehan, Alexey V. Melnik, Riya C. Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis‐Félix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A. Quinn, Nicole Sikora, Justin J. J. van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C. Weldon, Rob Knight, Nuno Bandeira, Pieter C. Dorrestein - Nature Methods 2020 cited by 137

  10. Enhancing untargeted metabolomics using metadata-based source annotation

    Authors: Julia M. Gauglitz, Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M. Aceves, Elizabeth A. R. Brown, Nicole Sikora, Alan K. Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J. Meehan, Kathleen Dorrestein, Justin P. Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J. Johnson, Katharina Spengler, Pedro Belda‐Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O. Elijah, Mingxun Wang, Clarisse Marotz, Kate E. Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, B.J. Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira da Silva, Flávio P. Veras, Thiago M. Cunha, Renê Donizeti Ribeiro de Oliveira, Paulo Louzada‐Júnior, Robert H. Mills, Paulina K. Piotrowski, Stephanie L. Servetas, Sandra M. Da Silva, Christina M. Jones, Nancy J. Lin, Katrice A. Lippa, Scott A. Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S. Dulai, Tatyana Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M. Doty, Jae Kim, Kyung E. Rhee, Julia Beauchamp‐Walters, Kenneth P. Wright, Maria Gloria Domínguez-Bello, Mark Manary, Michelli F. Oliveira, Brigid S. Boland, Norberto Peporine Lopes, Mónica Gumá, Austin D. Swafford, Rachel J. Dutton, Rob Knight, Pieter C. Dorrestein - Nature Biotechnology 2022 cited by 77

  11. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Authors: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo J.N. Bettencourt da Silva, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters, Yunhu Wan, Mingxun Wang and 9 more - 2018 cited by 883

  12. Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures

    Authors: Jacob M. Wozniak, Robert H. Mills, Joshua Olson, J.R. Caldera, Gregory D. Sepich‐Poore, Marvic Carrillo-Terrazas, Chih‐Ming Tsai, Fernando Vargas, Rob Knight, Pieter C. Dorrestein, George Y. Liu, Victor Nizet, George Sakoulas, Warren E. Rose, David J. Gonzalez - Cell 2020 cited by 127

  13. Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome

    Authors: Samuel J. Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry, Monika Fleshner, Martha Hotz Vitaterna, Fred W. Turek - PLoS ONE 2020 cited by 98

  14. Feature-based Molecular Networking in the GNPS Analysis Environment

    Authors: Louis‐Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A. Aksenov, Oliver Alka, Pierre‐Marie Allard, Aiko Barsch, Xavier Cachet, Andrés Mauricio Caraballo‐Rodríguez, Ricardo Silva, Tam Dang, Neha Garg, Julia M. Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K. Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouëllec, Marcus Ludwig, Christian Martin, Laura‐Isobel McCall, Jonathan McSayles, Sven Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Mélissa Nothias-Esposito, Julien Paolini, Vanessa V. Phelan, Tomáš Pluskal, Robert A. Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin J. J. van der Hooft, Fernando Vargas, Kelly C. Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C. Dorrestein - Nature Methods 2019 cited by 1,549

  15. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

    Authors: Liu Cao, Alexey Gurevich, Kelsey L. Alexander, C. Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto‐Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, Louis‐Félix Nothias, Nitin K. Singh, Jon G. Sanders, Rodolfo Antonio Salido Benítez, Luke Thompson, Md-Nafiz Hamid, James T. Morton, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Iddo Friedberg, Rob Knight, Kasthuri Venkateswaran, William H. Gerwick, Lena Gerwick, Pieter C. Dorrestein, Pavel A. Pevzner, Hosein Mohimani - Cell Systems 2019 cited by 74

  16. Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples

    Authors: Alexey V. Melnik, Ricardo Silva, Embriette R. Hyde, Alexander A. Aksenov, Fernando Vargas, Amina Bouslimani, Ivan Protsyuk, Alan K. Jarmusch, Anupriya Tripathi, Theodore Alexandrov, Rob Knight, Pieter C. Dorrestein - Analytical Chemistry 2017 cited by 93

  17. Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms

    Authors: Robert S. Thompson, Michelle Gaffney, Shelby Hopkins, Tel Kelley, Antonio González, Samuel J. Bowers, Martha Hotz Vitaterna, Fred W. Turek, Christine L. Foxx, Christopher A. Lowry, Fernando Vargas, Pieter C. Dorrestein, Kenneth P. Wright, Rob Knight, Monika Fleshner - Brain Behavior and Immunity 2021 cited by 72

  18. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Authors: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo J.N. Bettencourt da Silva, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters, Yunhu Wan, Mingxun Wang and 10 more - 2018 cited by 584

  19. A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats

    Authors: Samuel J. Bowers, Keith C. Summa, Robert S. Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A. Lowry, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Monika Fleshner, Fred W. Turek, Martha Hotz Vitaterna - Frontiers in Neuroscience 2022 cited by 24

  20. Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

    Authors: Julia M. Gauglitz, Christine M. Aceves, Alexander A. Aksenov, Gajender Aleti, Jehad Almaliti, Amina Bouslimani, Elizabeth A. R. Brown, Anaamika Campeau, Andrés Mauricio Caraballo‐Rodríguez, Rama Chaar, Ricardo Silva, Alyssa M. Demko, Francesca Di Ottavio, Emmanuel O. Elijah, Madeleine Ernst, L. Paige Ferguson, Xavier Holmes, Alan K. Jarmusch, Lingjing Jiang, Kyo Bin Kang, Irina Koester, Brian Kwan, Jie Li, Yueying Li, Alexey V. Melnik, Carlos Molina‐Santiago, Bohan Ni, Aaron L. Oom, Morgan Panitchpakdi, Daniel Petras, Robert A. Quinn, Nicole Sikora, Katharina Spengler, Bahar Teke, Anupriya Tripathi, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Alison Vrbanac, Anthony Q. Vu, Steven C Wang, Kelly C. Weldon, Kayla Wilson, Jacob M. Wozniak, Michael C. Yoon, Nuno Bandeira, Pieter C. Dorrestein - Food Chemistry 2019 cited by 81

  21. Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep

    Authors: Robert S. Thompson, Fernando Vargas, Pieter C. Dorrestein, Maciej Chichlowski, Brian Berg, Monika Fleshner - Scientific Reports 2020 cited by 64

  22. Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity

    Authors: Xin Fang, Yoshiki Vázquez‐Baeza, Emmanuel O. Elijah, Fernando Vargas, Gail Ackermann, Gregory Humphrey, Rebecca Lau, Kelly C. Weldon, Jon G. Sanders, Morgan Panitchpakdi, Carolina S. Carpenter, Alan K. Jarmusch, Jennifer Neill, Ara Miralles, Parambir S. Dulai, Siddharth Singh, Matthew Tsai, Austin D. Swafford, Larry Smarr, David L. Boyle, Bernhard Ø. Palsson, John T. Chang, Pieter C. Dorrestein, William J. Sandborn, Rob Knight, Brigid S. Boland - Inflammatory Bowel Diseases 2020 cited by 47

  23. De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments

    Authors: Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey D. Prjibelski, Mark Fisher, Fernando Vargas, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner - Cell Systems 2019 cited by 45

  24. The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients

    Authors: Carlos G. Gonzalez, Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henry Secaira-Morocho, Christella E. Widjaja, Matthew Tsai, Yash Mittal, Brian A. Yee, Fernando Vargas, Kelly C. Weldon, Julia M. Gauglitz, Clara Delaroque, Consuelo Sauceda, Leigh‐Ana Rossitto, Gail Ackermann, Gregory Humphrey, Austin D. Swafford, Corey A. Siegel, Jay C. Buckey, Laura E. Raffals, Charlotte Sadler, Peter Lindholm, Kathleen M. Fisch, Mark Valaseck, Arief A. Suriawinata, G Yeo, Pradipta Ghosh, John T. Chang, Hiutung Chu, Pieter C. Dorrestein, Qiyun Zhu, Benoît Chassaing, Rob Knight, David J. Gonzalez, Parambir S. Dulai - Cellular and Molecular Gastroenterology and Hepatology 2022 cited by 30