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Michael J. MacCoss

Active 1999–2025

184
Papers
42,477
Citations
94
h-index
172
i10-index

Citations

Citations per year for Michael J. MacCoss1987: 1 citations1989: 1 citations1993: 1 citations1998: 1 citations2000: 9 citations2001: 2 citations2002: 15 citations2003: 61 citations2004: 96 citations2005: 120 citations2006: 144 citations2007: 192 citations2008: 186 citations2009: 279 citations2010: 222 citations2011: 287 citations2012: 385 citations2013: 420 citations2014: 473 citations2015: 507 citations2016: 518 citations2017: 449 citations2018: 458 citations2019: 1,337 citations2020: 1,676 citations2021: 1,625 citations2022: 1,284 citations2023: 1,135 citations2024: 1,906 citations2025: 930 citations2026: 31 citations1988: no citations, so this year is not shown1990–1992: no citations, so these years are not shown1994–1997: no citations, so these years are not shown1999: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 5,911 citing papers, 30.4% of this breakdownGermany: 1,673 citing papers, 8.6% of this breakdownChina: 1,494 citing papers, 7.7% of this breakdownUnited Kingdom: 1,322 citing papers, 6.8% of this breakdownCanada: 827 citing papers, 4.2% of this breakdownSwitzerland: 688 citing papers, 3.5% of this breakdownFrance: 659 citing papers, 3.4% of this breakdownAustralia: 570 citing papers, 2.9% of this breakdownNetherlands: 510 citing papers, 2.6% of this breakdownSpain: 432 citing papers, 2.2% of this breakdownItaly: 422 citing papers, 2.2% of this breakdownDenmark: 406 citing papers, 2.1% of this breakdown
0%30.4%Other 23.4%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology48.5%
  • Medicine18.9%
  • Chemistry18.4%
  • Agricultural and Biological Sciences4.3%
  • Immunology and Microbiology2.7%
  • Environmental Science1.8%
  • Other5.4%

Topics

  • Advanced Proteomics Techniques and Applications7.3%
  • Mass Spectrometry Techniques and Applications4.9%
  • Metabolomics and Mass Spectrometry Studies4.9%
  • Ubiquitin and proteasome pathways1.9%
  • Mitochondrial Function and Pathology1.8%
  • RNA and protein synthesis mechanisms1.7%
  • Other77.5%

Coauthors

All papers

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  1. A cross-platform toolkit for mass spectrometry and proteomics

    Authors: Matthew Chambers, Brendan MacLean, Robert Burke, Dario Amodei, Daniel Ruderman, Steffen Neumann, Laurent Gatto, Bernd Fischer, Brian Pratt, Jarrett D. Egertson, Katherine Hoff, Darren Kessner, Natalie Tasman, Nicholas Shulman, Barbara Frewen, Tahmina A Baker, Mi‐Youn Brusniak, Christopher Paulse, David M. Creasy, Lisa Flashner, Kian Kani, Chris Moulding, Sean L. Seymour, Lydia M. Nuwaysir, Brent Lefebvre, Frank E. Kuhlmann, Joe Roark, Rainer Paape, Detlev Suckau, Tina Hemenway, Andreas Hühmer, James Langridge, B. Connolly, Trey Chadick, Krisztina Holly, Josh Eckels, Eric W. Deutsch, Robert L. Moritz, Jonathan E. Katz, David B. Agus, Michael J. MacCoss, David L. Tabb, Parag Mallick - Nature Biotechnology 2012 cited by 4,308

  2. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

    Authors: Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L. Finney, Barbara Frewen, Randall Kern, David L. Tabb, Daniel C. Liebler, Michael J. MacCoss - Bioinformatics, Bioinform. 2010 cited by 4,966

  3. The ProteomeXchange consortium at 10 years: 2023 update

    Authors: Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 865

  4. Semi-supervised learning for peptide identification from shotgun proteomics datasets

    Authors: Lukas Käll, Jesse D. Canterbury, Jason Weston, William Stafford Noble, Michael J. MacCoss - Nature Methods 2007 cited by 2,567

  5. The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

    Authors: Lindsay K. Pino, Brian C. Searle, James G. Bollinger, Brook L. Nunn, Brendan MacLean, Michael J. MacCoss - Mass Spectrometry Reviews 2017 cited by 887

  6. How many human proteoforms are there?

    Authors: Ruedi Aebersold, Jeffrey N. Agar, I. Jonathan Amster, Mark S. Baker, Carolyn R. Bertozzi, Emily S. Boja, Catherine E. Costello, Benjamin F. Cravatt, Catherine Fenselau, Benjamin A. García, Ying Ge, Jeremy Gunawardena, Ronald C. Hendrickson, Paul J. Hergenrother, Christian G. Huber, Alexander R. Ivanov, Ole N. Jensen, Michael C. Jewett, Neil L. Kelleher, Laura L. Kiessling, Nevan J. Krogan, Martin R. Larsen, Joseph A. Loo, Rachel R. Ogorzalek Loo, Emma Lundberg, Michael J. MacCoss, Parag Mallick, Vamsi K. Mootha, Milan Mrksich, Tom W. Muir, Steven M. Patrie, James J. Pesavento, Sharon J. Pitteri, Henry Rodriguez, Alan Saghatelian, Wendy Sandoval, Hartmut Schlüter, Salvatore Sechi, Sarah A. Slavoff, Lloyd M. Smith, M Snyder, Paul M. Thomas, Mathias Uhlén, Jennifer E. Van Eyk, Marc Vidal, David R. Walt, Forest M. White, Evan R. Williams, Therese Wohlschlager, Vicki H. Wysocki, Nathan A. Yates, Nicolas L. Young, Bing Zhang - Nature Chemical Biology 2018 cited by 944

  7. De novo design of high-affinity binders of bioactive helical peptides

    Authors: Susana Vázquez Torres, Philip J. Y. Leung, Preetham Venkatesh, Isaac D. Lutz, Fabian Hink, Huu‐Hien Huynh, Jessica O. Becker, Hsien‐Wei Yeh, David Juergens, Nathaniel R. Bennett, Andrew N. Hoofnagle, Eric Huang, Michael J. MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K. Bera, Alex Kang, Joshmyn De La Cruz, Paul M. Levine, Xinting Li, Mila Lamb, Stacey Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L. Watson, Joseph M. Rogers, David Baker - Nature 2023 cited by 224

  8. Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics

    Authors: Kendra J. Adams, Brian Pratt, Neelanjan Bose, Laura G. Dubois, Lisa St. John‐Williams, Kevin M. Perrott, Karina Ky, Pankaj Kapahi, Vagisha Sharma, Michael J. MacCoss, M. Arthur Moseley, Carol A. Colton, Brendan MacLean, Birgit Schilling, J. Will Thompson, Alzheimer’s Disease Metabolomics Consortium - Journal of Proteome Research 2020 cited by 627

  9. Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry

    Authors: Brian C. Searle, Lindsay K. Pino, Jarrett D. Egertson, Ying S. Ting, Robert Lawrence, Brendan MacLean, Judit Villén, Michael J. MacCoss - Nature Communications 2018 cited by 585

  10. Proteogenomic data and resources for pan-cancer analysis

    Authors: Yize Li, Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet, Yo Akiyama, Shankara Anand, Chet Birger, Song Cao, Rekha Chaudhary, Padmini Chilappagari, Marcin Cieślik, Antonio Colaprico, Daniel Cui Zhou, Corbin Day, Marcin J. Domagalski, Myvizhi Esai Selvan, David Fenyö, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Zeynep H. Gümüş, David I. Heiman, Michael Holck, Runyu Hong, Yingwei Hu, Eric J. Jaehnig, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Robert J. Klein, Jonathan T. Lei, Wen-Wei Liang, Yuxing Liao, Caleb M. Lindgren, Weiping Ma, Lei Ma, Michael J. MacCoss, Fernanda Martins Rodrigues, Wilson McKerrow, Ngoc B. Nguyen, Robert Oldroyd, Alexander Pilozzi, Pietro Pugliese, Boris Reva, Paul A. Rudnick, Kelly V. Ruggles, Dmitry Rykunov, Sara R. Savage, Michael Schnaubelt, Tobias Schraink, Zhiao Shi, Deepak Singhal, Xiaoyu Song, Erik Storrs, Nadezhda V. Terekhanova, Ratna R. Thangudu, Mathangi Thiagarajan, Liang-Bo Wang, Joshua M. Wang, Ying Wang, Bo Wen, Yige Wu, Matthew A. Wyczalkowski, Xin Yi, Lijun Yao, Xinpei Yi, Hui Zhang, Qing Zhang, Maya Zuhl, Gad Getz, Li Ding, Alexey I. Nesvizhskii, Pei Wang, Ana I. Robles, Bing Zhang, Samuel Payne, Alexander J. Lazar, Amanda G. Paulovich, Antonio Colaprico, Antonio Iavarone, Arul M. Chinnaiyan, Brian Druker, Chandan Kumar‐Sinha, Chelsea J. Newton, Chen Huang, D.R. Mani, Richard Smith, Emily M. Huntsman, Eric E. Schadt, Eunkyung An, Francesca Petralia, Galen Hostetter, Gilbert S. Omenn, Hanbyul Cho, Henry Rodriguez, Hui Zhang, Iga Kołodziejczak and 34 more - Cancer Cell 2023 cited by 233

  11. Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0

    Authors: Matthew The, Michael J. MacCoss, William Stafford Noble, Lukas Käll - Journal of the American Society for Mass Spectrometry 2016 cited by 496

  12. The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics

    Authors: Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 778

  13. Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries

    Authors: Lindsay K. Pino, Seth Just, Michael J. MacCoss, Brian C. Searle - Molecular & Cellular Proteomics 2020 cited by 317

  14. Aminoglycoside antibiotics induce bacterial biofilm formation

    Authors: Lucas R. Hoffman, David A. D’Argenio, Michael J. MacCoss, Zhaoying Zhang, Roger A. Jones, Samuel I. Miller - Nature 2005 cited by 1,318

  15. Using iRT, a normalized retention time for more targeted measurement of peptides

    Authors: Claudia Escher, Lukas Reiter, Brendan MacLean, Reto Ossola, Franz Herzog, John Chilton, Michael J. MacCoss, Oliver Rinner - PROTEOMICS 2012 cited by 634

  16. Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline

    Authors: Vagisha Sharma, Josh Eckels, Birgit Schilling, Christina Ludwig, Jacob D. Jaffe, Michael J. MacCoss, Brendan MacLean - Molecular & Cellular Proteomics 2018 cited by 285

  17. Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

    Authors: Mark Gerstein, Zhi John Lu, Eric L. Van Nostrand, Chao Cheng, Bradley I. Arshinoff, Tao Liu, Kevin Y. Yip, R. Robilotto, Andreas Rechtsteiner, Kohta Ikegami, Pedro Alves, Aurélien Chateigner, Marc D. Perry, Mitzi Morris, Raymond K. Auerbach, Xin Feng, Jing Leng, Anne Vielle, Wei Niu, Kahn Rhrissorrakrai, Ashish Agarwal, Roger P. Alexander, Galt P Barber, Cathleen Brdlik, Jennifer Brennan, Jeremy Brouillet, Adrian R. Carr, Ming-Sin Cheung, Hiram Clawson, Sergio Contrino, Luke O. Dannenberg, Abby F. Dernburg, Arshad Desai, Lindsay L. Dick, Andrea C. Dosé, Jiang Du, Thea A. Egelhofer, Sevinç Ercan, Ghia Euskirchen, Brent Ewing, Elise A. Feingold, Reto Gassmann, Peter J. Good, Phil Green, F. Gullier, Michelle Gutwein, Mark S. Guyer, Lukas Habegger, Ting Han, Jorja G. Henikoff, Stefan R. Henz, Angie S. Hinrichs, H. Holster, Tony Hyman, Al Iniguez, J. Janette, Morten B. Jensen, Masaomi Kato, W. James Kent, Ellen Kephart, Vishal Khivansara, Ekta Khurana, John K. Kim, Paulina Kolasinska-Zwierz, Eric C. Lai, Isabel Latorre, A. Leahey, Suzanna Lewis, Paul Lloyd, Lucas Lochovsky, Rebecca F. Lowdon, Yaniv Lubling, Rachel Lyne, Michael J. MacCoss, Sebastian D. Mackowiak, Marco Mangone, Sheldon McKay, Desirea Mecenas, Gennifer E. Merrihew, David M. Miller, Andrew Muroyama, John I. Murray, Siew-Loon Ooi, Vu Pham, T. Phippen, Elicia Preston, Nikolaus Rajewsky, Gunnar Rätsch, Heidi Rosenbaum, Joel Rozowsky, Kim Rutherford, Peter Ruzanov, Mihail Sarov, Rajkumar Sasidharan, Andrea Sboner, Paul Scheid, Eran Segal, Hyunjin Shin, Chong Shou, Frank J. Slack and 31 more - Science 2010 cited by 1,041

  18. Overexpression of Catalase Targeted to Mitochondria Attenuates Murine Cardiac Aging

    Authors: Dao‐Fu Dai, Luis F. Santana, Marc Vermulst, Daniela M. Tomazela, Mary J. Emond, Michael J. MacCoss, Katherine A. Gollahon, George M. Martin, Lawrence A. Loeb, Warren Ladiges, Peter S. Rabinovitch - Circulation 2009 cited by 493

  19. A Deeper Look into Comet—Implementation and Features

    Authors: Jimmy K. Eng, Michael R. Hoopmann, Tahmina A. Jahan, Jarrett D. Egertson, William Stafford Noble, Michael J. MacCoss - Journal of the American Society for Mass Spectrometry 2015 cited by 279

  20. Altered proteome turnover and remodeling by short‐term caloric restriction or rapamycin rejuvenate the aging heart

    Authors: Dao‐Fu Dai, Pabalu P. Karunadharma, Ying Ann Chiao, Nathan Basisty, David A. Crispin, Edward J. Hsieh, Tony Chen, Haiwei Gu, Danijel Djukovic, Daniel Raftery, Richard P. Beyer, Michael J. MacCoss, Peter S. Rabinovitch - Aging Cell 2014 cited by 339

  21. Molecular architecture and assembly of the DDB1–CUL4A ubiquitin ligase machinery

    Authors: Stéphane Angers, Ti Li, Xianhua Yi, Michael J. MacCoss, Randall T. Moon, Ning Zheng - Nature 2006 cited by 675

  22. Sampling the proteome by emerging single-molecule and mass spectrometry methods

    Authors: Michael J. MacCoss, Javier A. Alfaro, Danielle A. Faivre, Christine C. Wu, Meni Wanunu, Nikolai Slavov - Nature Methods 2023 cited by 84

  23. Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins

    Authors: Thomas F. Martínez, Sally Lyons‐Abbott, Angie L. Bookout, Eduardo Vieira de Souza, Cynthia J. Donaldson, Joan Vaughan, Calvin J. Lau, Ariel Abramov, Arian F. Baquero, Karalee Baquero, Dave Friedrich, Justin Huard, Ray Davis, Bong-Chul Kim, Ty Koch, Aaron J. Mercer, Ayesha Misquith, Sara A. Murray, Sakara Perry, Lindsay K. Pino, Christina A. Sanford, Alex Simon, Yu Zhang, Garrett Zipp, Cristiano Valim Bizarro, Maxim N. Shokhirev, Andrew J. Whittle, Brian C. Searle, Michael J. MacCoss, Alan Saghatelian, Christopher A. Barnes - Cell Metabolism 2023 cited by 78

  24. Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows

    Authors: Dario Amodei, Jarrett D. Egertson, Brendan MacLean, Richard S. Johnson, Gennifer E. Merrihew, Austin W. Keller, D. C. B. Marsh, Olga Vitek, Parag Mallick, Michael J. MacCoss - Journal of the American Society for Mass Spectrometry 2019 cited by 166