litlas
Log inCreate account

Shujiro Okuda

Active 1990–2025

84
Papers
28,408
Citations
44
h-index
77
i10-index

Citations

Citations per year for Shujiro Okuda1975: 1 citations1977: 2 citations1981: 1 citations1982: 1 citations1983: 1 citations1989: 1 citations1990: 1 citations1991: 5 citations1992: 8 citations1993: 8 citations1994: 6 citations1995: 8 citations1996: 13 citations1997: 1 citations1998: 4 citations1999: 6 citations2000: 7 citations2001: 5 citations2002: 5 citations2003: 8 citations2004: 4 citations2005: 3 citations2006: 4 citations2007: 13 citations2008: 106 citations2009: 205 citations2010: 204 citations2011: 163 citations2012: 152 citations2013: 228 citations2014: 265 citations2015: 291 citations2016: 309 citations2017: 368 citations2018: 391 citations2019: 1,134 citations2020: 1,310 citations2021: 1,281 citations2022: 1,181 citations2023: 865 citations2024: 1,332 citations2025: 636 citations2026: 23 citations1976: no citations, so this year is not shown1978–1980: no citations, so these years are not shown1984–1988: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorChina: 3,756 citing papers, 22.6% of this breakdownUnited States: 2,924 citing papers, 17.6% of this breakdownGermany: 837 citing papers, 5% of this breakdownUnited Kingdom: 813 citing papers, 4.9% of this breakdownJapan: 785 citing papers, 4.7% of this breakdownFrance: 529 citing papers, 3.2% of this breakdownCanada: 474 citing papers, 2.9% of this breakdownItaly: 435 citing papers, 2.6% of this breakdownSpain: 412 citing papers, 2.5% of this breakdownNetherlands: 381 citing papers, 2.3% of this breakdownIndia: 357 citing papers, 2.1% of this breakdownAustralia: 339 citing papers, 2% of this breakdown
0%22.6%Other 27.6%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology56.5%
  • Medicine18.9%
  • Agricultural and Biological Sciences7.4%
  • Environmental Science3.6%
  • Immunology and Microbiology3%
  • Chemistry2.3%
  • Other8.3%

Topics

  • Gut microbiota and health11.2%
  • Diet and metabolism studies3.8%
  • Genomics and Phylogenetic Studies2.9%
  • Clostridium difficile and Clostridium perfringens research2.4%
  • Bioinformatics and Genomic Networks2.3%
  • Probiotics and Fermented Foods1.9%
  • Other75.5%

Coauthors

All papers

Open in search
  1. A metagenome-wide association study of gut microbiota in type 2 diabetes

    Authors: Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen, Yangqing Peng, Dongya Zhang, Zhuye Jie, Wenxian Wu, Youwen Qin, Wenbin Xue, Junhua Li, Lingchuan Han, Dong-Hui Lu, Peixian Wu, Dai Yali, Xiaojuan Sun, Zesong Li, Ai-Fa TANG, Shilong Zhong, Xiaoping Li, Wei–Neng Chen, Ran Xu, Mingbang Wang, Qiang Feng, Meihua Gong, Jing Yu, Yanyan Zhang, Ming Zhang, Torben Hansen, Gastón Sánchez, Jeroen Raes, Gwen Falony, Shujiro Okuda, Mathieu Almeida, Emmanuelle Le-chatelier, Pierre Renault, Nicolas Pons, Jean-Michel Batto, Zhaoxi Zhang, Hua Chen, Ruifu Yang, Wei‐Mou Zheng, Songgang Li, Huanming Yang, Jian Wang, S. Dusko Ehrlich, Rasmus Nielsen, Oluf Pedersen, Karsten Kristiansen, Jun Wang, Jun Wang, Jun Wang - Nature 2012 cited by 7,033

  2. KEGG for linking genomes to life and the environment

    Authors: Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi - Nucleic Acids Research, Nucleic Acids Res. 2007 cited by 7,054

  3. The ProteomeXchange consortium at 10 years: 2023 update

    Authors: Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 865

  4. KAAS: an automatic genome annotation and pathway reconstruction server

    Authors: Yuki Moriya, Masumi Itoh, Shujiro Okuda, Akiyasu C. Yoshizawa, Minoru Kanehisa - Nucleic Acids Research, Nucleic Acids Res. 2007 cited by 4,321

  5. Senolytic vaccination improves normal and pathological age-related phenotypes and increases lifespan in progeroid mice

    Authors: Masayoshi Suda, Ippei Shimizu, Goro Katsuumi, Yohko Yoshida, Yuka Hayashi, Ryutaro Ikegami, Naomi Matsumoto, Yutaka Yoshida, Ryuta Mikawa, Akihiro Katayama, Jun Wada, Masahide Seki, Yutaka Suzuki, Atsushi Iwama, Hironori Nakagami, Ayako Nagasawa, Ryuichi Morishita, Masataka Sugimoto, Shujiro Okuda, Masanori Tsuchida, Kazuyuki Ozaki, Mayumi Nakanishi‐Matsui, Tohru Minamino - Nature Aging 2021 cited by 266

  6. jPOSTrepo: an international standard data repository for proteomes

    Authors: Shujiro Okuda, Yu Watanabe, Yuki Moriya, Shin Kawano, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama, Susumu Goto, Yasushi Ishihama - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 746

  7. Species–function relationships shape ecological properties of the human gut microbiome

    Authors: Sara Vieira‐Silva, Gwen Falony, Youssef Darzi, Gipsi Lima‐Mendez, Roberto Garcia Yunta, Shujiro Okuda, Doris Vandeputte, Mireia Valles‐Colomer, Falk Hildebrand, Samuel Chaffron, Jeroen Raes - Nature Microbiology 2016 cited by 519

  8. The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics

    Authors: Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 778

  9. p62/SQSTM1-droplet serves as a platform for autophagosome formation and anti-oxidative stress response

    Authors: Shun Kageyama, Sigurður Guðmundsson, Yu‐shin Sou, Yoshinobu Ichimura, Naoki Tamura, Saiko Kazuno, Takashi Ueno, Yoshiki Miura, Daisuke Noshiro, Manabu Abe, Tsunehiro Mizushima, Nobuaki Miura, Shujiro Okuda, Hozumi Motohashi, Jin‐A Lee, Kenji Sakimura, Tomoyuki Ohe, Nobuo N. Noda, Satoshi Waguri, Eeva‐Liisa Eskelinen, Masaaki Komatsu - Nature Communications 2021 cited by 288

  10. GlycoPOST realizes FAIR principles for glycomics mass spectrometry data

    Authors: Yu Watanabe, Kiyoko F. Aoki-Kinoshita, Yasushi Ishihama, Shujiro Okuda - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 205

  11. The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

    Authors: Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak, Yasset Pérez-Riverol, Tobias Ternent, David S. Campbell, Manuel Bernal Llinares, Shujiro Okuda, Shin Kawano, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaíno - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 949

  12. p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming

    Authors: Tetsuya Saito, Yoshinobu Ichimura, Keiko Taguchi, Takafumi Suzuki, Tsunehiro Mizushima, Kenji Takagi, Yuki Hirose, Masayuki Nagahashi, Tetsuro Iso, Toshiaki Fukutomi, Maki Ohishi, Keiko Endo, Takefumi Uemura, Yasumasa Nishito, Shujiro Okuda, Miki Obata, Tsuguka Kouno, Riyo Imamura, Yukio Tada, Rika Obata, Daisuke Yasuda, Kyôko Takahashi, Tsutomu Fujimura, Jingbo Pi, Myung‐Shik Lee, Takashi Ueno, Tomoyuki Ohe, Tadahiko Mashino, Toshifumi Wakai, Hirotatsu Kojima, Takayoshi Okabe, Tetsuo Nagano, Hozumi Motohashi, Satoshi Waguri, Tomoyoshi Soga, Masayuki Yamamoto, Keiji Tanaka, Masaaki Komatsu - Nature Communications 2016 cited by 372

  13. Autophagy regulates lipid metabolism through selective turnover of NCoR1

    Authors: Tetsuya Saito, Akiko Kuma, Yuki Sugiura, Yoshinobu Ichimura, Miki Obata, Hiroshi Kitamura, Shujiro Okuda, Hyeon‐Cheol Lee, Kazutaka Ikeda, Yumi Kanegae, Izumu Saito, Johan Auwerx, Hozumi Motohashi, Makoto Suematsu, Tomoyoshi Soga, Takehiko Yokomizo, Satoshi Waguri, Noboru Mizushima, Masaaki Komatsu - Nature Communications 2019 cited by 195

  14. The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences

    Authors: Issaku Yamada, Masaaki Shiota, Daisuke Shinmachi, Tamiko Ono, Shinichiro Tsuchiya, Masae Hosoda, Akihiro Fujita, Nobuyuki P. Aoki, Yu Watanabe, Noriaki Fujita, Kiyohiko Angata, Hiroyuki Kaji, Hisashi Narimatsu, Shujiro Okuda, Kiyoko F. Aoki‐Kinoshita - Nature Methods 2020 cited by 131

  15. Next generation sequencing‐based gene panel tests for the management of solid tumors

    Authors: Masayuki Nagahashi, Yoshifumi Shimada, Hiroshi Ichikawa, Hitoshi Kameyama, Kazuaki Takabe, Shujiro Okuda, Toshifumi Wakai - Cancer Science 2018 cited by 193

  16. Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum

    Authors: Aina Gotoh, Toshihiko Katoh, Mikiyasu Sakanaka, Yiwei Ling, Chihaya Yamada, Sadaki Asakuma, Tadasu Urashima, Yusuke Tomabechi, Ayako Katayama-Ikegami, Shin Kurihara, Kenji Yamamoto, Gaku Harata, Fang He, Junko Hirose, Motomitsu Kitaoka, Shujiro Okuda, Takane Katayama - Scientific Reports 2018 cited by 169

  17. Obesity-Related Gut Microbiota Aggravates Alveolar Bone Destruction in Experimental Periodontitis through Elevation of Uric Acid

    Authors: Keisuke Sato, Kyoko Yamazaki, Kyoko Yamazaki, Tamotsu Kato, Yumiko Nakanishi, Takahiro Tsuzuno, Mai Yokoji‐Takeuchi, Miki Yamada‐Hara, Nobuaki Miura, Shujiro Okuda, Hiroshi Ohno, Kazuhisa Yamazaki, Kazuhisa Yamazaki - mBio 2021 cited by 75

  18. Three-dimensional understanding of the morphological complexity of the human uterine endometrium

    Authors: Manako Yamaguchi, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Nozomi Yachida, Haruka Ueda, Kentaro Sugino, Yutaro Mori, Kaoru Yamawaki, Ryo Tamura, Tatsuya Ishiguro, Teiichi Motoyama, Yu Watanabe, Shujiro Okuda, Kazuki Tainaka, Takayuki Enomoto - iScience 2021 cited by 121

  19. Glycoprotein nonmetastatic melanoma protein B regulates lysosomal integrity and lifespan of senescent cells

    Authors: Masayoshi Suda, Ippei Shimizu, Goro Katsuumi, Chieh Lun Hsiao, Yohko Yoshida, Naomi Matsumoto, Yutaka Yoshida, Akihiro Katayama, Jun Wada, Masahide Seki, Yutaka Suzuki, Shujiro Okuda, Kazuyuki Ozaki, Mayumi Nakanishi‐Matsui, Tohru Minamino - Scientific Reports 2022 cited by 63

  20. Histopathological characteristics and artificial intelligence for predicting tumor mutational burden-high colorectal cancer

    Authors: Yoshifumi Shimada, Shujiro Okuda, Yu Watanabe, Yosuke Tajima, Masayuki Nagahashi, Hiroshi Ichikawa, Masato Nakano, Jun Sakata, Yasumasa Takii, Takashi Kawasaki, Kei-ichi Homma, Tomohiro Kamori, Eiji Oki, Yiwei Ling, Shiho Takeuchi, Toshifumi Wakai - Journal of Gastroenterology 2021 cited by 62

  21. Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum

    Authors: Chihaya Yamada, Aina Gotoh, Mikiyasu Sakanaka, Mitchell Hattie, Keith A. Stubbs, Ayako Katayama-Ikegami, Junko Hirose, Shin Kurihara, T. Arakawa, Motomitsu Kitaoka, Shujiro Okuda, Takane Katayama, Shinya Fushinobu - Cell chemical biology 2017 cited by 129

  22. Brown adipose tissue dysfunction promotes heart failure via a trimethylamine N-oxide-dependent mechanism

    Authors: Yohko Yoshida, Ippei Shimizu, Atsuhiro Shimada, Keita Nakahara, Sachiko Yanagisawa, Minoru Kubo, Shinji Fukuda, Chiharu Ishii, Hiromitsu Yamamoto, Takamasa Ishikawa, Kuniyuki Kano, Junken Aoki, Goro Katsuumi, Masayoshi Suda, Kazuyuki Ozaki, Yutaka Yoshida, Shujiro Okuda, Shigeo Ohta, Shiki Okamoto, Yasuhiko Minokoshi, Kanako Oda, Toshikuni Sasaoka, Manabu Abe, Kenji Sakimura, Yoshiaki Kubota, Norihiko Yoshimura, Shingo Kajimura, María A. Zuriaga, Kenneth Walsh, Tomoyoshi Soga, Tohru Minamino - Scientific Reports 2022 cited by 38

  23. Elevated bile acid metabolism and microbiome are associated with suppressed cell proliferation and better survival in breast cancer.

    Authors: Rongrong Wu, Irene Yu, Yoshihisa Tokumaru, Mariko Asaoka, Masanori Oshi, Li Yan, Shujiro Okuda, Takashi Ishikawa, Kazuaki Takabe - 2022 cited by 31

  24. Profiling of host genetic alterations and intra-tumor microbiomes in colorectal cancer

    Authors: Shujiro Okuda, Yoshifumi Shimada, Yosuke Tajima, Kizuki Yuza, Yuki Hirose, Hiroshi Ichikawa, Masayuki Nagahashi, Jun Sakata, Yiwei Ling, Nobuaki Miura, Mika Sugai, Yu Watanabe, Shiho Takeuchi, Toshifumi Wakai - Computational and Structural Biotechnology Journal 2021 cited by 40