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Samuel Chaffron

Active 2006–2025

44
Papers
20,073
Citations
28
h-index
36
i10-index

Citations

Citations per year for Samuel Chaffron1986: 1 citations1988: 1 citations1992: 2 citations1993: 1 citations1998: 1 citations1999: 1 citations2000: 1 citations2003: 2 citations2006: 1 citations2007: 25 citations2008: 94 citations2009: 125 citations2010: 179 citations2011: 232 citations2012: 178 citations2013: 178 citations2014: 139 citations2015: 220 citations2016: 305 citations2017: 348 citations2018: 318 citations2019: 767 citations2020: 795 citations2021: 790 citations2022: 696 citations2023: 494 citations2024: 639 citations2025: 331 citations2026: 13 citations1987: no citations, so this year is not shown1989–1991: no citations, so these years are not shown1994–1997: no citations, so these years are not shown2001–2002: no citations, so these years are not shown2004–2005: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,216 citing papers, 19% of this breakdownChina: 1,176 citing papers, 10.1% of this breakdownGermany: 865 citing papers, 7.4% of this breakdownUnited Kingdom: 724 citing papers, 6.2% of this breakdownFrance: 653 citing papers, 5.6% of this breakdownCanada: 445 citing papers, 3.8% of this breakdownSpain: 436 citing papers, 3.7% of this breakdownSwitzerland: 382 citing papers, 3.3% of this breakdownNetherlands: 355 citing papers, 3% of this breakdownItaly: 325 citing papers, 2.8% of this breakdownAustralia: 321 citing papers, 2.7% of this breakdownBelgium: 278 citing papers, 2.4% of this breakdown
0%19%Other 30%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology50%
  • Environmental Science21.8%
  • Medicine9.7%
  • Agricultural and Biological Sciences8.5%
  • Immunology and Microbiology3%
  • Neuroscience1.3%
  • Other5.7%

Topics

  • Gut microbiota and health12.2%
  • Microbial Community Ecology and Physiology7.9%
  • Genomics and Phylogenetic Studies4.9%
  • Protist diversity and phylogeny3.9%
  • Clostridium difficile and Clostridium perfringens research3.3%
  • Bioinformatics and Genomic Networks2.9%
  • Other64.9%

Coauthors

All papers

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  1. Population-level analysis of gut microbiome variation

    Authors: Gwen Falony, Marie Joossens, Sara Vieira‐Silva, Jun Wang, Youssef Darzi, Karoline Faust, Alexander Kurilshikov, Marc Jan Bonder, Mireia Valles‐Colomer, Doris Vandeputte, Raúl Y. Tito, Samuel Chaffron, Leen Rymenans, Chloë Verspecht, Lise De Sutter, Gipsi Lima‐Mendez, Kevin D’hoe, Karl Jonckheere, D Homola, Roberto García, Ettje F. Tigchelaar, Linda Eeckhaudt, Jingyuan Fu, Liesbet Henckaerts, Alexandra Zhernakova, Cisca Wijmenga, Jeroen Raes - Science 2016 cited by 2,490

  2. Structure and function of the global ocean microbiome

    Authors: Shinichi Sunagawa, Luís Pedro Coelho, Samuel Chaffron, Jens Roat Kultima, Karine Labadie, Guillem Salazar, Bardya Djahanschiri, Georg Zeller, Daniel R. Mende, Adriana Alberti, Francisco M. Cornejo‐Castillo, Paul Igor Costea, Corinne Cruaud, Francesco d’Ovidio, Stéfan Engelen, Isabel Ferrera, Josep M. Gasol, Lionel Guidi, Falk Hildebrand, Florian Kokoszka, Cyrille Lepoivre, Gipsi Lima‐Mendez, Julie Poulain, Bonnie T. Poulos, Marta Royo‐Llonch, Hugo Sarmento, Sara Vieira‐Silva, Céline Dimier, Marc Picheral, Sarah Searson, Stefanie Kandels‐Lewis, Tara Oceans coordinators, Chris Bowler, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Jean Weissenbach, Patrick Wincker, Eric Karsenti, Jeroen Raes, Silvia G. Acinas, Peer Bork, Emmanuel Boss, Chris Bowler, Michael Follows, Lee Karp‐Boss, Uroš Kržič, Emmanuel G. Reynaud, Christian Sardet, Mike Sieracki, Didier Velayoudon - Science 2015 cited by 3,178

  3. Eukaryotic plankton diversity in the sunlit ocean

    Authors: Colomban de Vargas, Stéphane Audic, Nicolas Henry, Johan Decelle, Frédéric Mahé, Ramiro Logares, Enrique Lara, Cédric Berney, Noan Le Bescot, Ian Probert, Margaux Carmichael, Julie Poulain, Sarah Romac, Sébastien Colin, Jean‐Marc Aury, Lucie Bittner, Samuel Chaffron, Micah Dunthorn, Stéfan Engelen, Olga Flegontova, Lionel Guidi, Aleš Horák, Olivier Jaillon, Gipsi Lima‐Mendez, Julius Lukeš, Shruti Malviya, Raphaël Morard, Matthieu Mulot, Eleonora Scalco, Raffaele Siano, Flora Vincent, Adriana Zingone, Céline Dimier, Marc Picheral, Sarah Searson, Stefanie Kandels‐Lewis, Tara Oceans Coordinators, Silvia G. Acinas, Peer Bork, Chris Bowler, Gabriel Gorsky, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Jeroen Raes, Michael E. Sieracki, Sabrina Speich, Lars Stemmann, Shinichi Sunagawa, Jean Weissenbach, Patrick Wincker, Eric Karsenti, Emmanuel Boss, Michael Follows, Lee Karp-Boss, Uroš Kržič, Emmanuel G. Reynaud, Christian Sardet, Matthew B. Sullivan, Didier Velayoudon - Science 2015 cited by 2,129

  4. Species–function relationships shape ecological properties of the human gut microbiome

    Authors: Sara Vieira‐Silva, Gwen Falony, Youssef Darzi, Gipsi Lima‐Mendez, Roberto Garcia Yunta, Shujiro Okuda, Doris Vandeputte, Mireia Valles‐Colomer, Falk Hildebrand, Samuel Chaffron, Jeroen Raes - Nature Microbiology 2016 cited by 519

  5. Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota

    Authors: Bärbel Stecher, Riccardo Robbiani, Alan W. Walker, Astrid M. Westendorf, Manja Barthel, Marcus Kremer, Samuel Chaffron, Andrew J. Macpherson, Jan Buer, Julian Parkhill, Gordon Dougan, Christian von Mering, Wolf‐Dietrich Hardt - PLoS Biology 2007 cited by 1,056

  6. Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

    Authors: Ahmed A. Zayed, James M. Wainaina, Guillermo Domínguez‐Huerta, Éric Pelletier, Jiarong Guo, Mohamed Mohssen, Funing Tian, Akbar Adjie Pratama, Benjamin Bolduc, Olivier Zablocki, Dylan Cronin, Lindsey Solden, Erwan Delage, Adriana Alberti, Jean‐Marc Aury, Quentin Carradec, Corinne Da Silva, Karine Labadie, Julie Poulain, Hans‐Joachim Ruscheweyh, Guillem Salazar, Elan Shatoff, Tara Oceans Coordinators‡, Ralf Bundschuh, Kurt Fredrick, Laura Kubatko, Samuel Chaffron, Alexander I. Culley, Shinichi Sunagawa, Jens H. Kuhn, Patrick Wincker, Matthew B. Sullivan, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Lionel Guidi, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hiroyuki Ogata, Nicole Poulton, Stéphane Pesant, Christian Sardet, Sabrinia Speich, Lars Stemmann, Matthew B. Sullivan, Shinichi Sungawa, Patrick Wincker - Science 2022 cited by 260

  7. The use of next generation sequencing for improving food safety: Translation into practice

    Authors: Balamurugan Jagadeesan, Peter Gerner‐Smidt, Marc W. Allard, Sébastien Leuillet, Anett Winkler, Yinghua Xiao, Samuel Chaffron, Jos van der Vossen, Silin Tang, Mitsuru Katase, Peter McClure, Bon Kimura, Lay Ching Chai, John W. Chapman, Kathie Grant - Food Microbiology 2018 cited by 364

  8. STRING 8 - a global view on proteins and their functional interactions in 630 organisms

    Authors: Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering - Nucleic Acids Research, Nucleic Acids Res. 2008 cited by 2,536

  9. Determinants of community structure in the global plankton interactome

    Authors: Gipsi Lima‐Mendez, Karoline Faust, Nicolas Henry, Johan Decelle, Sébastien Colin, Fabrizio Carcillo, Samuel Chaffron, J. Cesar Ignacio-Espinosa, Simon Roux, Flora Vincent, Lucie Bittner, Youssef Darzi, Jun Wang, Stéphane Audic, Léo Berline, Gianluca Bontempi, Ana María Cabello, Laurent Coppola, Francisco M. Cornejo‐Castillo, Francesco d’Ovidio, Luc De Meester, Isabel Ferrera, Marie-José Garet-Delmas, Lionel Guidi, Elena Lara, Stéphane Pesant, Marta Royo‐Llonch, Guillem Salazar, Pablo Sánchez, Marta Sebastián, Caroline Souffreau, Céline Dimier, Marc Picheral, Sarah Searson, Stefanie Kandels‐Lewis, Tara Oceans coordinators, Gabriel Gorsky, Fabrice Not, Hiroyuki Ogata, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Patrick Wincker, Silvia G. Acinas, Shinichi Sunagawa, Peer Bork, Matthew B. Sullivan, Eric Karsenti, Chris Bowler, Colomban de Vargas, Jeroen Raes - Science 2015 cited by 1,034

  10. Plankton networks driving carbon export in the oligotrophic ocean

    Authors: Lionel Guidi, Samuel Chaffron, Lucie Bittner, Damien Eveillard, Abdelhalim Larhlimi, Simon Roux, Youssef Darzi, Stéphane Audic, Léo Berline, Jennifer R. Brum, Luís Pedro Coelho, J. Cesar Ignacio‐Espinoza, Shruti Malviya, Shinichi Sunagawa, Céline Dimier, Stefanie Kandels‐Lewis, Marc Picheral, Julie Poulain, Sarah Searson, Lars Stemmann, Fabrice Not, Pascal Hingamp, Sabrina Speich, Mick Follows, Lee Karp‐Boss, Emmanuel Boss, Hiroyuki Ogata, Stéphane Pesant, Jean Weissenbach, Patrick Wincker, Silvia G. Acinas, Peer Bork, Colomban de Vargas, Daniele Iudicone, Matthew B. Sullivan, Jeroen Raes, Eric Karsenti, Chris Bowler, Gabriel Gorsky - Nature 2016 cited by 891

  11. Patterns and ecological drivers of ocean viral communities

    Authors: Jennifer R. Brum, J. Cesar Ignacio‐Espinoza, Simon Roux, Guilhem Doulcier, Silvia G. Acinas, Adriana Alberti, Samuel Chaffron, Corinne Cruaud, Colomban de Vargas, Josep M. Gasol, Gabriel Gorsky, Ann Gregory, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Bonnie T. Poulos, Sarah M. Schwenck, Sabrina Speich, Céline Dimier, Stefanie Kandels‐Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Peer Bork, Chris Bowler, Shinichi Sunagawa, Patrick Wincker, Eric Karsenti, Matthew B. Sullivan - Science 2015 cited by 838

  12. Faeces‐derived extracellular vesicles participate in the onset of barrier dysfunction leading to liver diseases

    Authors: Lionel Fizanne, Alexandre Villard, Nadia Benabbou, Sylvain Recoquillon, Raffaella Soleti, Erwan Delage, Mireille Wertheimer, Xavier Vidal‐Gómez, Thibauld Oullier, Samuel Chaffron, Maria Carmen Martínez, Michel Neunlist, Jérôme Boursier, Ramaroson Andriantsitohaina - Journal of Extracellular Vesicles 2023 cited by 68

  13. Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota

    Authors: Raúl Y. Tito, Samuel Chaffron, Clara Caenepeel, Gipsi Lima‐Mendez, Jun Wang, Sara Vieira‐Silva, Gwen Falony, Falk Hildebrand, Youssef Darzi, Leen Rymenans, Chloë Verspecht, Peer Bork, Séverine Vermeire, Marie Joossens, Jeroen Raes - Gut 2018 cited by 235

  14. Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

    Authors: Bärbel Stecher, Samuel Chaffron, Rina Käppeli, Siegfried Hapfelmeier, Susanne Freedrich, Thomas C. Weber, Jorum Kirundi, Mrutyunjay Suar, Kathy D. McCoy, Christian von Mering, Andrew J. Macpherson, Wolf‐Dietrich Hardt - PLoS Pathogens 2010 cited by 442

  15. Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

    Authors: Nathanaël Delmotte, Claudia Knief, Samuel Chaffron, Gerd Innerebner, Bernd Roschitzki, Ralph Schlapbach, Christian von Mering, Julia A. Vorholt - National Academy of Sciences, Proceedings of the National Academy of Sciences 2009 cited by 910

  16. Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

    Authors: Marta Royo‐Llonch, Pablo Sánchez, Clara Ruiz‐González, Guillem Salazar, Carlos Pedrós‐Alió, Marta Sebastián, Karine Labadie, Lucas Paoli, Federico M. Ibarbalz, Lucie Zinger, Benjamin Churcheward, Tara Oceans Coordinators, Marcel Babin, Peer Bork, Emmanuel Boss, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Nicole Poulton, Jeroen Raes, Christian Sardet, Sabrina Speich, Lars Setmmann, Matthew B. Sullivan, Samuel Chaffron, Damien Eveillard, Eric Karsenti, Shinichi Sunagawa, Patrick Wincker, Lee Karp-Boss, Chris Bowler, Silvia G. Acinas - Nature Microbiology 2021 cited by 111

  17. Mechanically induced development and maturation of human intestinal organoids in vivo

    Authors: Holly M. Poling, David Wu, Nicole Brown, Michael Baker, Taylor A. Hausfeld, Nhan Huynh, Samuel Chaffron, James Dunn, Simon P. Hogan, James M. Wells, Michael A. Helmrath, Maxime M. Mahé - Nature Biomedical Engineering 2018 cited by 107

  18. Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

    Authors: Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron - Nature Communications 2024 cited by 60

  19. Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

    Authors: Claudia Knief, Nathanaël Delmotte, Samuel Chaffron, Manuel Stark, Gerd Innerebner, Reiner Waßmann, Christian von Mering, Julia A. Vorholt - The ISME Journal 2011 cited by 739

  20. A global network of coexisting microbes from environmental and whole-genome sequence data

    Authors: Samuel Chaffron, Hubert Rehrauer, Jakob Pernthaler, Christian von Mering - Genome Research 2010 cited by 533

  21. Priorities for ocean microbiome research

    Authors: Andre Luis Abreu, Etienne Bourgois, Adam Gristwood, Romain Troublé, Tara Oceans, Silvia G. Acinas, Peer Bork, Emmanuel Boss, Chris Bowler, Marko Budinich, Samuel Chaffron, Colomban de Vargas, Tom O. Delmont, Damien Eveillard, Lionel Guidi, Daniele Iudicone, Stephanie Kandels, Hélène Morlon, Fabien Lombard, Rainer Pepperkok, Juan José Pierella Karlusich, Gwenaël Piganeau, Antoine Régimbeau, Guilhem Sommeria‐Klein, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Patrick Wincker, Olivier Zablocki, Detlev Arendt, Josipa Bilić, ROBERT FINN, Édith Heard, Brendan Rouse, Jessica Vamathevan, Raffaella Casotti, Ibon Cancio, Michael Cunliffe, Anne Emmanuelle Kervella, Wiebe H. C. F. Kooistra, Matthias Obst, Nicolas Pade, Deborah M. Power, Ioulia Santi, Tatiana M. Tsagaraki, Jan Vanaverbeke - Nature Microbiology 2022 cited by 79

  22. STRING 7 - recent developments in the integration and prediction of protein interactions

    Authors: Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork - Nucleic Acids Research, Nucleic Acids Res. 2006 cited by 670

  23. Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System

    Authors: Jacques Gonzalès, Justine Marchix, Laetitia Aymeric, Catherine Le Berre‐Scoul, Johanna Zoppi, Philippe Bordron, Marie Burel, Laëtitia Davidovic, Jean‐Romain Richard, Alexandru Gaman, Florian Lejuste, Julie Z. Brouillet, Françoise Le Vacon, Samuel Chaffron, Marion Leboyer, Hélène Boudin, Michel Neunlist - Microorganisms 2021 cited by 26

  24. The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea

    Authors: Kathrin Endt, Bärbel Stecher, Samuel Chaffron, Emma Slack, Nicolas Tchitchek, Arndt Benecke, Laurye Van Maele, Jean‐Claude Sirard, A. MUELLER, Mathias Heikenwälder, Andrew J. Macpherson, Richard A. Strugnell, Christian von Mering, Wolf‐Dietrich Hardt - PLoS Pathogens 2010 cited by 344