Matthew B. Sullivan
Active 1998–2025
- Also published as
- Matthew B Sullivan
- 169
- Papers
- 52,573
- Citations
- 106
- h-index
- 164
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Environmental Science46.3%
- Biochemistry, Genetics and Molecular Biology31.2%
- Medicine8.1%
- Agricultural and Biological Sciences5.5%
- Neuroscience2.2%
- Earth and Planetary Sciences1.3%
- Other5.4%
Topics
- Microbial Community Ecology and Physiology10.6%
- Bacteriophages and microbial interactions10.6%
- Genomics and Phylogenetic Studies9.4%
- Gut microbiota and health6%
- Protist diversity and phylogeny4.2%
- Plant Virus Research Studies2.8%
- Other56.4%
Coauthors
- Simon Roux45
- Benjamin Bolduc25
- Ahmed A. Zayed21
- Silvia G. Acinas19
- Sallie W. Chisholm17
- Natalie Solonenko16
- Olivier Zablocki16
- Peer Bork16
- Chris Bowler15
- Shinichi Sunagawa14
- Virginia I. Rich14
- Ann Gregory13
- Colomban de Vargas13
- Ho Bin Jang13
- Jennifer R. Brum13
- Julie Poulain13
- Stéphane Pesant13
- Patrick Wincker12
- Bonnie T. Poulos11
- Dean Vik11
- Emmanuel Boss11
- Guillem Salazar11
- Hiroyuki Ogata11
- Mart Krupovìč11
All papers
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Authors: Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez‐Huerta, Tom O. Delmont, Akbar Adjie Pratama, María Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux - Microbiome 2021 cited by 1,329
- Structure and function of the global ocean microbiome
Authors: Shinichi Sunagawa, Luís Pedro Coelho, Samuel Chaffron, Jens Roat Kultima, Karine Labadie, Guillem Salazar, Bardya Djahanschiri, Georg Zeller, Daniel R. Mende, Adriana Alberti, Francisco M. Cornejo‐Castillo, Paul Igor Costea, Corinne Cruaud, Francesco d’Ovidio, Stéfan Engelen, Isabel Ferrera, Josep M. Gasol, Lionel Guidi, Falk Hildebrand, Florian Kokoszka, Cyrille Lepoivre, Gipsi Lima‐Mendez, Julie Poulain, Bonnie T. Poulos, Marta Royo‐Llonch, Hugo Sarmento, Sara Vieira‐Silva, Céline Dimier, Marc Picheral, Sarah Searson, Stefanie Kandels‐Lewis, Tara Oceans coordinators, Chris Bowler, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Jean Weissenbach, Patrick Wincker, Eric Karsenti, Jeroen Raes, Silvia G. Acinas, Peer Bork, Emmanuel Boss, Chris Bowler, Michael Follows, Lee Karp‐Boss, Uroš Kržič, Emmanuel G. Reynaud, Christian Sardet, Mike Sieracki, Didier Velayoudon - Science 2015 cited by 3,178
- Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Authors: Dae‐Wook Kang, James B. Adams, Ann Gregory, Thomas J. Borody, Lauren Chittick, Alessio Fasano, Alexander Khoruts, Elizabeth Geis, Juan Maldonado, Sharon McDonough-Means, Elena L. Pollard, Simon Roux, Michael J. Sadowsky, Karen Schwarzberg Lipson, Matthew B. Sullivan, J. Gregory Caporaso, Rosa Krajmalnik‐Brown - Microbiome 2017 cited by 1,370
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Authors: Ho Bin Jang, Benjamin Bolduc, Olivier Zablocki, Jens H. Kuhn, Simon Roux, Evelien M. Adriaenssens, J. Rodney Brister, Andrew M. Kropinski, Mart Krupovìč, Rob Lavigne, Dann Turner, Matthew B. Sullivan - Nature Biotechnology 2019 cited by 1,048
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
Authors: Ann Gregory, Olivier Zablocki, Ahmed A. Zayed, Allison Howell, Benjamin Bolduc, Matthew B. Sullivan - Cell Host & Microbe 2020 cited by 684
- Scientists’ warning to humanity: microorganisms and climate change
Authors: Ricardo Cavicchioli, William J. Ripple, Kenneth N. Timmis, Farooq Azam, Lars R. Bakken, Matthew Baylis, Michael J. Behrenfeld, Antje Boëtius, Philip W. Boyd, Aimée T. Classen, Thomas W. Crowther, Roberto Danovaro, Christine M. Foreman, Jef Huisman, David A. Hutchins, Janet Jansson, David M. Karl, Britt Koskella, David B. Mark Welch, Jennifer B. H. Martiny, Mary Ann Moran, Victoria J. Orphan, David Reay, Justin V. Remais, Virginia I. Rich, Brajesh K. Singh, Lisa Y. Stein, Frank J. Stewart, Matthew B. Sullivan, Madeleine J. H. van Oppen, Scott C. Weaver, Eric A. Webb, Nicole S. Webster - Nature Reviews Microbiology 2019 cited by 2,074
- Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee
Authors: Dann Turner, Andrey N. Shkoporov, Cédric Lood, Andrew Millard, Bas E. Dutilh, Poliane Alfenas‐Zerbini, Leonardo Joaquim van Zyl, Ramy K. Aziz, Hanna M. Oksanen, Minna M. Poranen, Andrew M. Kropinski, Jakub Barylski, J. Rodney Brister, Nina Chanisvili, Robert A. Edwards, François Enault, Annika Gillis, Petar Knežević, Mart Krupovìč, D. İpek Kurtböke, Kushkina Ai, Rob Lavigne, Susan M. Lehman, Małgorzata Łobocka, Cristina Moraru, Andrea I. Moreno‐Switt, Vera V. Morozova, Jesca Nakavuma, Alejandro Reyes Muñoz, J. Rumnieks, BL Sarkar, Matthew B. Sullivan, Jumpei Uchiyama, Johannes Wittmann, Yigang Tong, Evelien M. Adriaenssens - Archives of Virology 2023 cited by 467
- Lysogeny in nature: mechanisms, impact and ecology of temperate phages
Authors: Cristina Howard‐Varona, Katherine R. Hargreaves, Stephen T. Abedon, Matthew B. Sullivan - The ISME Journal 2017 cited by 884
- Eukaryotic plankton diversity in the sunlit ocean
Authors: Colomban de Vargas, Stéphane Audic, Nicolas Henry, Johan Decelle, Frédéric Mahé, Ramiro Logares, Enrique Lara, Cédric Berney, Noan Le Bescot, Ian Probert, Margaux Carmichael, Julie Poulain, Sarah Romac, Sébastien Colin, Jean‐Marc Aury, Lucie Bittner, Samuel Chaffron, Micah Dunthorn, Stéfan Engelen, Olga Flegontova, Lionel Guidi, Aleš Horák, Olivier Jaillon, Gipsi Lima‐Mendez, Julius Lukeš, Shruti Malviya, Raphaël Morard, Matthieu Mulot, Eleonora Scalco, Raffaele Siano, Flora Vincent, Adriana Zingone, Céline Dimier, Marc Picheral, Sarah Searson, Stefanie Kandels‐Lewis, Tara Oceans Coordinators, Silvia G. Acinas, Peer Bork, Chris Bowler, Gabriel Gorsky, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Jeroen Raes, Michael E. Sieracki, Sabrina Speich, Lars Stemmann, Shinichi Sunagawa, Jean Weissenbach, Patrick Wincker, Eric Karsenti, Emmanuel Boss, Michael Follows, Lee Karp-Boss, Uroš Kržič, Emmanuel G. Reynaud, Christian Sardet, Matthew B. Sullivan, Didier Velayoudon - Science 2015 cited by 2,129
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
Authors: Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovìč, Jens H. Kuhn, Rob Lavigne, J. Rodney Brister, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Guy Cochrane, Rebecca A. Daly, Christelle Desnues, Melissa B. Duhaime, Joanne Emerson, François Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Natalia Ivanova, Jessica Labonté, Kyung-Bum Lee, Rex R. Malmstrom, Manuel Martínez‐García, Ilene Karsch‐Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie‐Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodríguez‐Valera, Karyna Rosario, Lynn M. Schriml, Frederik Schulz, Grieg F. Steward, Matthew B. Sullivan, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Rebecca Vega Thurber, Nicole S. Webster, Katrine L Whiteson, Steven W. Wilhelm, K. Eric Wommack, Tanja Woyke, Kelly Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh - Nature Biotechnology 2018 cited by 790
- Marine DNA Viral Macro- and Microdiversity from Pole to Pole
Authors: Ann Gregory, Ahmed A. Zayed, Nádia Conceição‐Neto, Ben Temperton, Benjamin Bolduc, Adriana Alberti, Mathieu Ardyna, Ksenia Arkhipova, Margaux Carmichael, Corinne Cruaud, Céline Dimier, Guillermo Domínguez‐Huerta, Joannie Ferland, Stefanie Kandels, Yunxiao Liu, Claudie Marec, Stéphane Pesant, Marc Picheral, Sergey A. Pisarev, Julie Poulain, Jean‐Éric Tremblay, Dean Vik, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Michael J. Follows, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels-Lewis, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Nicole Poulton, Jeroen Raes, Christian Sardet, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Matthew B. Sullivan, Shinichi Sunagawa, Marcel Babin, Chris Bowler, Alexander I. Culley, Colomban de Vargas, Bas E. Dutilh, Daniele Iudicone, Daniele Iudicone, Simon Roux, Simon Roux, Shinichi Sunagawa, Patrick Wincker, Matthew B. Sullivan, Matthew B. Sullivan - Cell 2019 cited by 914
- Biosynthetic potential of the global ocean microbiome
Authors: Lucas Paoli, Hans‐Joachim Ruscheweyh, Clarissa C. Forneris, Florian Hubrich, Satria A. Kautsar, Agneya Bhushan, Alessandro Lotti, Quentin Clayssen, Guillem Salazar, Alessio Milanese, Charlotte I. Carlström, Chrysa Papadopoulou, Daniel Gehrig, Mikhail Karasikov, Harun Mustafa, Martin Larralde, Laura M. Carroll, Pablo Sánchez, Ahmed A. Zayed, Dylan Cronin, Silvia G. Acinas, Peer Bork, Chris Bowler, Tom O. Delmont, Josep M. Gasol, Alvar D. Gossert, André Kahles, Matthew B. Sullivan, Patrick Wincker, Georg Zeller, Serina L. Robinson, Jörn Piel, Shinichi Sunagawa - Nature 2022 cited by 409
- Host-linked soil viral ecology along a permafrost thaw gradient
Authors: Joanne Emerson, Simon Roux, Jennifer R. Brum, Benjamin Bolduc, Ben J. Woodcroft, Ho Bin Jang, Caitlin M. Singleton, Lindsey Solden, Adrian E. Naas, Joel A. Boyd, Suzanne B. Hodgkins, Rachel Wilson, Gareth Trubl, Changsheng Li, Steve Frolking, Phillip B. Pope, Kelly Wrighton, Patrick Crill, Jeffrey P. Chanton, S. R. Saleska, Gene W. Tyson, Virginia I. Rich, Matthew B. Sullivan - Nature Microbiology 2018 cited by 670
- Life and death in the soil microbiome: how ecological processes influence biogeochemistry
Authors: Noah W. Sokol, Eric Slessarev, Gianna L. Marschmann, Alexa M. Nicolas, Steven J. Blazewicz, Eoin Brodie, Mary K. Firestone, Megan Foley, Rachel Hestrin, Bruce A. Hungate, Benjamin J. Koch, Bram WG Stone, Matthew B. Sullivan, Olivier Zablocki, Gareth Trubl, Karis J. McFarlane, Rhona Stuart, Erin Nuccio, Peter Weber, Yongqin Jiao, Mavrik Zavarin, Jeffrey A. Kimbrel, Keith D. Morrison, Dinesh Adhikari, Amrita Bhattacharaya, Peter Nico, Jinyun Tang, Nicole DiDonato, Ljiljana Paša‐Tolić, Alex Greenlon, Ella T. Sieradzki, Paul Dijkstra, Egbert Schwartz, Rohan Sachdeva, Jillian F. Banfield, Jennifer Pett‐Ridge - Nature Reviews Microbiology 2022 cited by 1,079
- VirSorter: mining viral signal from microbial genomic data
Authors: Simon Roux, François Enault, Bonnie L. Hurwitz, Matthew B. Sullivan - PeerJ 2015 cited by 1,212
- Expansion of the global RNA virome reveals diverse clades of bacteriophages
Authors: Uri Neri, Yuri I. Wolf, Simon Roux, Antônio Pedro Camargo, Benjamin Lee, Darius Kazlauskas, I. Min Chen, Natalia Ivanova, Lisa Zeigler Allen, David Páez-Espino, Donald A. Bryant, Devaki Bhaya, Adrienne B. Narrowe, Alexander J. Probst, Alexander Sczyrba, Annegret Kohler, Armand Séguin, Ashley Shade, Barbara J. Campbell, Björn D. Lindahl, Brandi Kiel Reese, Breanna M. Roque, Chris DeRito, Colin Averill, Daniel Cullen, David A. C. Beck, David A. Walsh, David M. Ward, Dongying Wu, Emiley A. Eloe‐Fadrosh, Eoin Brodie, Erica B. Young, Erik A. Lilleskov, Federico Castillo, Francis Martin, Gary R. LeCleir, Graeme T. Attwood, Hinsby Cadillo‐Quiroz, Holly M. Simon, Ian Hewson, Igor V. Grigoriev, James M. Tiedje, Janet Jansson, Janey Lee, Jean S. VanderGheynst, Jeff Dangl, Jeff S. Bowman, Jeffrey L. Blanchard, Jennifer L. Bowen, Jiangbing Xu, Jillian F. Banfield, Jody W. Deming, Joel E. Kostka, John M. Gladden, Josephine Z. Rapp, Joshua Sharpe, Katherine D. McMahon, Kathleen K. Treseder, Kay D. Bidle, Kelly C. Wrighton, Kimberlee Thamatrakoln, Klaus Nüsslein, Laura K. Meredith, Lucı́a Ramı́rez, Marc Buée, Marcel Huntemann, Marina Kalyuzhnaya, Mark P. Waldrop, Matthew B. Sullivan, Matthew O. Schrenk, Matthias Hess, Michael Vega, Michelle O’Malley, Mónica Medina, Naomi E. Gilbert, Nathalie Delherbe, Olivia U. Mason, Paul Dijkstra, Peter F. Chuckran, Petr Baldrián, Philippe Constant, Ramūnas Stepanauskas, Rebecca A. Daly, Regina Lamendella, Robert J. Gruninger, Robert M. McKay, Samuel Hylander, Sarah L. Lebeis, Sarah P. Esser, Silvia G. Acinas, Steven S. Wilhelm, Steven W. Singer, Susannah G. Tringe, Tanja Woyke, T. B. K. Reddy, Terrence H. Bell, Thomas Möck, Tim A. McAllister, Vera Thiel, Vincent J. Denef and 10 more - Cell 2022 cited by 311
- PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
Authors: Peter Hornbeck, Jon M. Kornhauser, С. И. Ткачев, Bin Zhang, Elźbieta Skrzypek, Brion W. Murray, Vaughan M. Latham, Matthew B. Sullivan - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 1,705
- Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Authors: Tara Oceans Coordinators, Simon Roux, Jennifer R. Brum, Bas E. Dutilh, Shinichi Sunagawa, Melissa B. Duhaime, Alexander Loy, Bonnie T. Poulos, Natalie Solonenko, Elena Lara, Julie Poulain, Stéphane Pesant, Stefanie Kandels‐Lewis, Céline Dimier, Marc Picheral, Sarah Searson, Corinne Cruaud, Adriana Alberti, Carlos M. Duarte, Josep M. Gasol, Dolors Vaqué, Peer Bork, Silvia G. Acinas, Patrick Wincker, Matthew B. Sullivan - Nature 2016 cited by 927
- Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
Authors: François Enault, Arnaud Briet, Léa Bouteille, Simon Roux, Matthew B. Sullivan, Marie‐Agnès Petit - The ISME Journal 2016 cited by 462
- Tara Oceans: towards global ocean ecosystems biology
Authors: Shinichi Sunagawa, Silvia G. Acinas, Peer Bork, Chris Bowler, Tara Oceans Coordinators, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Michael J. Follows, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Lee Karp-Boss, Eric Karsenti, Magali Lescot, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Nicole Poulton, Jeroen Raes, Christian Sardet, Mike Sieracki, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Patrick Wincker, Damien Eveillard, Gabriel Gorsky, Lionel Guidi, Daniele Iudicone, Eric Karsenti, Fabien Lombard, Hiroyuki Ogata, Stéphane Pesant, Matthew B. Sullivan, Patrick Wincker, Colomban de Vargas - Nature Reviews Microbiology 2020 cited by 500
- Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Authors: Guillem Salazar, Lucas Paoli, Adriana Alberti, Jaime Huerta‐Cepas, Hans‐Joachim Ruscheweyh, Miguelangel Cuenca, Christopher M. Field, Luís Pedro Coelho, Corinne Cruaud, Stéfan Engelen, Ann Gregory, Karine Labadie, Claudie Marec, Éric Pelletier, Marta Royo‐Llonch, Simon Roux, Pablo Sánchez, Hideya Uehara, Ahmed A. Zayed, Georg Zeller, Margaux Carmichael, Céline Dimier, Joannie Ferland, Stefanie Kandels‐Lewis, Marc Picheral, Sergey A. Pisarev, Julie Poulain, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Michael J. Follows, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels‐Lewis, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Nicole Poulton, Jeroen Raes, Christian Sardet, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Patrick Wincker, Silvia G. Acinas, Marcel Babin, Peer Bork, Chris Bowler, Colomban de Vargas, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Lee Karp-Boss, Eric Karsenti, Hiroyuki Ogata, Stéphane Pesant, Sabrina Speich, Matthew B. Sullivan, Patrick Wincker, Shinichi Sunagawa - Cell 2019 cited by 520
- Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
Authors: Amy Zimmerman, Cristina Howard‐Varona, David M. Needham, Seth G. John, Alexandra Z. Worden, Matthew B. Sullivan, Jacob Waldbauer, Maureen L. Coleman - Nature Reviews Microbiology 2019 cited by 456
- Virus taxonomy in the age of metagenomics
Authors: Peter Simmonds, Mike Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, Eric B. Carstens, Andrew J. Davison, Eric Delwart, Alexander E. Gorbalenya, Balázs Harrach, Roger Hull, Andrew M. Q. King, Eugene V. Koonin, Mart Krupovìč, Jens H. Kuhn, Elliot J. Lefkowitz, Max L. Nibert, Richard Orton, Marilyn J. Roossinck, Sead Sabanadzovic, Matthew B. Sullivan, Curtis A. Suttle, Robert B. Tesh, R.A.A. van der Vlugt, Arvind Varsani, F. Murilo Zerbini - Nature Reviews Microbiology 2017 cited by 779
- Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Authors: Tom O. Delmont, Morgan Gaïa, Damien Daniel Hinsinger, Paul Frémont, Chiara Vanni, Antonio Fernàndez-Guerra, A. Murat Eren, Artem Kourlaiev, Léo d’Agata, Quentin Clayssen, Émilie Villar, Karine Labadie, Corinne Cruaud, Julie Poulain, Corinne Da Silva, Marc Wessner, Benjamin Noël, Jean‐Marc Aury, Shinichi Sunagawa, Silvia G. Acinas, Peer Bork, Eric Karsenti, Chris Bowler, Christian Sardet, Lars Stemmann, Colomban de Vargas, Patrick Wincker, Magali Lescot, Marcel Babin, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Olivier Jaillon, Stefanie Kandels, Daniele Iudicone, Hiroyuki Ogata, Stéphane Pesant, Matthew B. Sullivan, Fabrice Not, Lee Karp‐Boss, Emmanuel Boss, Guy Cochrane, Michael Follows, Nicole Poulton, Jeroen Raes, Mike Sieracki, Sabrina Speich, Colomban de Vargas, Chris Bowler, Eric Karsenti, Éric Pelletier, Patrick Wincker, Olivier Jaillon - Cell Genomics 2022 cited by 189
