Timothée Flutre

• Loïc Le Cunff4
• Agnès Doligez3
• Ayellet V. Segrè3
• Benjamin Iriarte3
• Cameron D. Palmer3
• Casandra A. Trowbridge3
• Charlotte Brault3
• Daniel G. MacArthur3
• David S. DeLuca3
• Ellen Gelfand3
• Hadi Quesneville3
• Joel N. Hirschhorn3
• Julian Maller3
• Lucas D. Ward3
• Manolis Kellis3
• Monkol Lek3
• Patrice This3
• Pouya Kheradpour3
• Taru Tukiainen3
• Taylor Young3
• Timothy J. Sullivan3
• Wendy Winckler3
• Yan Meng3
• Bin Zhang2

1. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

   Authors: Kristin G. Ardlie, David S. DeLuca, Ayellet V. Segrè, Timothy J. Sullivan, Taylor Young, Ellen Gelfand, Casandra A. Trowbridge, Julian Maller, Taru Tukiainen, Monkol Lek, Lucas D. Ward, Pouya Kheradpour, Benjamin Iriarte, Yan Meng, Cameron D. Palmer, Tõnu Esko, Wendy Winckler, Joel N. Hirschhorn, Manolis Kellis, Daniel G. MacArthur, Gad Getz, Andrey A. Shabalin, Gen Li, Yi‐Hui Zhou, Andrew B. Nobel, Ivan Rusyn, Fred A. Wright, Tuuli Lappalainen, Pedro G. Ferreira, Halit Ongen, Manuel A. Rivas, Alexis Battle, Sara Mostafavi, Jean Monlong, Michael Sammeth, Marta Melé, Ferrán Reverter, Jakob M. Goldmann, Daphne Koller, Roderic Guigó, Mark I. McCarthy, Emmanouil T. Dermitzakis, Eric R. Gamazon, Hae Kyung Im, Anuar Konkashbaev, Dan L. Nicolae, Nancy J. Cox, Timothée Flutre, Xiaoquan Wen, Matthew Stephens, Jonathan K. Pritchard, Zhidong Tu, Bin Zhang, Tao Huang, Quan Long, Luan Lin, Jialiang Yang, Jun Zhu, Jun Liu, Amanda Brown, Bernadette Mestichelli, Denee Tidwell, Edmund Lo, Mike Salvatore, Saboor Shad, Jeffrey A. Thomas, John T. Lonsdale, Michael T. Moser, Bryan M. Gillard, Ellen Karasik, Kimberly Ramsey, Christopher Choi, Barbara A. Foster, John Syron, Johnell Fleming, Harold I. Magazine, Rick Hasz, Gary Walters, Jason Bridge, Mark Miklos, Susan Sullivan, Laura K. Barker, Heather M. Traino, Maghboeba Mosavel, Laura A. Siminoff, Dana R. Valley, Daniel C. Rohrer, Scott D. Jewell, Philip A. Branton, Leslie H. Sobin, Mary E. Barcus, Liqun Qi, Jeffrey A. McLean, Pushpa Hariharan, Ki Sung Um, Shenpei Wu, David E. Tabor, Charles Shive, Anna M. Smith, Stephen A. Buia and 39 more - Science 2015 cited by 5,736

2. The Genotype-Tissue Expression (GTEx) project.

   Authors: John T. Lonsdale, Jeffrey A. Thomas, Mike Salvatore, Rebecca Phillips, Edmund Lo, Saboor Shad, Richard Hasz, Gary Walters, Fernando U. Garcia, Nancy Young, Barbara A. Foster, Mike Moser, Ellen Karasik, Bryan M. Gillard, Kimberley D. Ramsey, Susan Sullivan, Jason Bridge, Harold I. Magazine, John Syron, Johnelle Fleming, Laura A. Siminoff, Heather M. Traino, Maghboeba Mosavel, Laura K. Barker, Scott D. Jewell, Dan Rohrer, Dan Maxim, Dana Filkins, P.R. Harbach, Eddie Cortadillo, Bree D. Berghuis, Lisa Turner, Eric A. Hudson, Kristin Feenstra, Leslie H. Sobin, J Robb, Phillip Branton, Greg E. Korzeniewski, Charles Shive, David E. Tabor, Liqun Qi, Kevin Groch, Sreenath Nampally, Steve Buia, Angela Zimmerman, Anna M. Smith, Robin Burges, Karna Robinson, Kim Valentino, Deborah Bradbury, Mark Cosentino, Norma Diaz-Mayoral, Mary Kennedy, Theresa Engel, Penelope Williams, Kenyon Erickson, Kristin G. Ardlie, Wendy Winckler, Gad Getz, David S. DeLuca, Daniel G. MacArthur, Manolis Kellis, Alexander Thomson, Taylor Young, Ellen Gelfand, Molly Donovan, Yan Meng, George Grant, Deborah C. Mash, Yvonne Marcus, Margaret J. Basile, Jun Liu, Jun Zhu, Zhidong Tu, Nancy J. Cox, Dan L. Nicolae, Eric R. Gamazon, Hae Kyung Im, Anuar Konkashbaev, Jonathan K. Pritchard, Matthew Stevens, Timothée Flutre, Xiaoquan Wen, Emmanouil T. Dermitzakis, Tuuli Lappalainen, Roderic Guigó, Jean Monlong, Michael Sammeth, Daphne Koller, Alexis Battle, Sara Mostafavi, Mark I. McCarthy, Manual Rivas, Julian Maller, Ivan Rusyn, Andrew B. Nobel, Fred A. Wright, Andrey A. Shabalin, Mike Feolo, Nataliya Sharopova and 27 more - Nature Genetics 2013 cited by 10,010

3. Considering Transposable Element Diversification in De Novo Annotation Approaches

   Authors: Timothée Flutre, Élodie Duprat, Catherine Feuillet, Hadi Quesneville - PLoS ONE 2011 cited by 532

4. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

   Authors: Pierre Abad, Jérôme Gouzy, Jean‐Marc Aury, Philippe Castagnone‐Sereno, Étienne Danchin, Emeline Deleury, Laetitia Perfus‐Barbeoch, Véronique Anthouard, François Artiguenave, Vivian Blok, Marie‐Cécile Caillaud, Pedro M. Coutinho, Corinne Da Silva, Francesca De Luca, Florence Deau, Magali Esquibet, Timothée Flutre, Jared V. Goldstone, Noureddine Hamamouch, Tarek Hewezi, Olivier Jaillon, Claire Jubin, Paola Leonetti, Marc Magliano, Tom Maier, Gabriel V. Markov, Paul McVeigh, Graziano Pesole, Julie Poulain, Marc Robinson‐Rechavi, Erika Sallet, Béatrice Segurens, Delphine Steinbach, Tom Tytgat, Edgardo Ugarte, Cyril Van Ghelder, Pasqua Veronico, Thomas J. Baum, Mark Blaxter, T. Bleve‐Zacheo, Eric Davis, Jonathan J. Ewbank, Bruno Favery, Éric Grenier, Bernard Henrissat, John T. Jones, Vincent Laudet, Aaron G. Maule, Hadi Quesneville, Marie-Noëlle Rosso, Thomas Schiex, Geert Smant, Jean Weissenbach, Patrick Wincker - Nature Biotechnology 2008 cited by 1,291

5. The ABO blood group is a trans-species polymorphism in primates

   Authors: Laure Ségurel, Emma E. Thompson, Timothée Flutre, Jessica N. Lovstad, Aarti Venkat, Susan W. Margulis, Jill Moyse, Steve Ross, Kathryn C. Gamble, Guy Sella, Carole Ober, Molly Przeworski - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 199

6. Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

   Authors: Jialiang Yang, Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann, Yong Zhao, Charles V. Mobbs, Eric E. Schadt, Jun Zhu, Zhidong Tu, Kristin Ardlie, David S. DeLuca, Ayellet V. Segrè, Timothy J. Sullivan, Taylor Young, Ellen Gelfand, Casandra A. Trowbridge, Julian Maller, Taru Tukiainen, Monkol Lek, Lucas D. Ward, Pouya Kheradpour, Benjamin Iriarte, Yan Meng, Cameron D. Palmer, Wendy Winckler, Joel N. Hirschhorn, Manolis Kellis, Daniel G. MacArthur, Gad Getz, Andrey A. Shablin, Gen Li, Yi-Hui Zhou, Andrew B. Nobel, Ivan Rusyn, Fred A. Wright, Tuuli Lappalainen, Pedro G. Ferreira, Halit Ongen, Manuel A. Rivas, Alexis Battle, Sara Mostafavi, Jean Monlong, Michael Sammeth, Marta Melé, Ferrán Reverter, Jakob M. Goldmann, Daphne Koller, Roderic Guigó, Mark I. McCarthy, Emmanouil T. Dermitzakis, Eric R. Gamazon, Anuar Konkashbaev, Dan L. Nicolae, Nancy J. Cox, Timothée Flutre, Xiaoquan Wen, Matthew Stephens, Jonathan K. Pritchard, Luan Lin, Jun Liu, Amanda Brown, Bernadette Mestichelli, Denee Tidwell, Edmund Lo, Mike Salvatore, Saboor Shad, Jeffrey A. Thomas, John T. Lonsdale, Christopher Choi, Ellen Karasik, Kimberly Ramsey, Michael T. Moser, Barbara A. Foster, Bryan M. Gillard, John Syron, Johnelle Fleming, Harold I. Magazine, Rick Hasz, Gary Walters, Jason Bridge, Mark Miklos, Susan Sullivan, Laura K. Barker, Heather M. Traino, Magboeba Mosavel, Laura A. Siminoff, Dana R. Valley, Daniel C. Rohrer, Scott Jewel, Philip A. Branton, Leslie H. Sobin, Liqun Qi, Pushpa Hariharan, Shenpei Wu, David E. Tabor, Charles Shive, Anna M. Smith, Stephen A. Buia and 34 more - Scientific Reports 2015 cited by 224

7. The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

   Authors: Hélène Badouin, Amandine Velt, François Gindraud, Timothée Flutre, Vincent Dumas, Sonia Vautrin, William Marande, Jonathan Corbi, Erika Sallet, Jérémy Ganofsky, Sylvain Santoni, Dominique Guyot, Eugenia Ricciardelli, Kristen Jepsen, Jos Käfer, Hélène Bergès, Éric Duchêne, Franck Picard, Philippe Hugueney, Raquel Tavares, Roberto Baciliéri, Camille Rustenholz, Gabriel Marais - Genome biology 2020 cited by 86

8. Across-population genomic prediction in grapevine opens up promising prospects for breeding

   Authors: Charlotte Brault, Vincent Segura, Patrice This, Loïc Le Cunff, Timothée Flutre, Pierre François, Thierry Pons, Jean‐Pierre Péros, Agnès Doligez - Horticulture Research 2022 cited by 26

9. A Statistical Framework for Joint eQTL Analysis in Multiple Tissues

   Authors: Timothée Flutre, Xiaoquan Wen, Jonathan K. Pritchard, Matthew Stephens - PLoS Genetics 2013 cited by 321

10. The epigenomic landscape of African rainforest hunter-gatherers and farmers

    Authors: Maud Fagny, Étienne Patin, Julia L. MacIsaac, Maxime Rotival, Timothée Flutre, Meaghan J. Jones, Katherine J. Siddle, Hélène Quach, Christine Harmant, Lisa M. McEwen, Alain Froment, Évelyne Heyer, Antoine Gessain, Edouard Betsem, Patrick Mouguiama-Daouda, Jean-Marie Hombert, George H. Perry, Luis B. Barreiro, Michael S. Kobor, Lluís Quintana‐Murci - Nature Communications 2015 cited by 101

11. A genome-wide association and prediction study in grapevine deciphers the genetic architecture of multiple traits and identifies genes under many new QTLs

    Authors: Timothée Flutre, Loïc Le Cunff, Ágota Fodor, Amandine Launay, Charles Romieu, Gilles Berger, Yves Bertrand, Nancy Terrier, Isabelle Beccavin, Virginie Bouckenooghe, Maryline Roques, Lucie Pinasseau, Arnaud Verbaere, Nicolas Sommerer, Véronique Cheynier, Roberto Baciliéri, Jean‐Michel Boursiquot, Thierry Lacombe, Valérie Laucou, Patrice This, Jean‐Pierre Péros, Agnès Doligez - G3 Genes Genomes Genetics 2022 cited by 39

12. From cultivar mixtures to allelic mixtures: opposite effects of allelic richness between genotypes and genotype richness in wheat

    Authors: Germain Montazeaud, Timothée Flutre, Elsa Ballini, Jean‐Benoit Morel, Jacques David, Johanna Girodolle, Aline Rocher, Aurélie Ducasse, Cyrille Violle, Florian Fort, Hélène Fréville - New Phytologist 2022 cited by 37

13. Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine

    Authors: Charlotte Brault, Agnès Doligez, Loïc Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre - G3 Genes Genomes Genetics 2021 cited by 22

14. Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements

    Authors: Emmanuelle d’Alençon, Hideki Sezutsu, Fabrice Legeai, Emmanuelle Permal, Sylvie Bernard‐Samain, Sylvie Gimenez, C. Gagneur, François Cousserans, Michihiko Shimomura, Alexandra Brun‐Barale, Timothée Flutre, Arnaud Couloux, P. D. East, Karl Gordon, Kazuei Mita, Hadi Quesneville, Philippe Fournier, René Feyereisen - National Academy of Sciences, Proceedings of the National Academy of Sciences 2010 cited by 168

15. Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality

    Authors: Mariem Nsibi, Barbara Gouble, Sylvie Bureau, Timothée Flutre, Christopher Sauvage, Jean-Marc Audergon, Jean‐Luc Regnard - G3 Genes Genomes Genetics 2020 cited by 32

16. Enhancing grapevine breeding efficiency through genomic prediction and selection index

    Authors: Charlotte Brault, Vincent Segura, Maryline Roques, Pauline Lamblin, Virginie Bouckenooghe, Nathalie Pouzalgues, Constance Cunty, Matthieu Breil, Marina Frouin, Léa Garcin, Louise Camps, Marie‐Agnès Ducasse, Charles Romieu, Gilles Masson, Sébastien Julliard, Timothée Flutre, Loïc Le Cunff - G3 Genes Genomes Genetics 2024 cited by 19

17. Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France

    Authors: Cathy Bouffartigue, Sandrine Debille, Olivier Fabreguettes, Ana Ramos Cabrer, Santiago Pereira‐Lorenzo, Timothée Flutre, Luc Harvengt - Annals of Forest Science 2020 cited by 18

18. Correction: Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

    Authors: Jialiang Yang, Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann, Yong Zhao, Charles V. Mobbs, Eric E. Schadt, Jun Zhu, Zhidong Tu, Kristin Ardlie, David S. DeLuca, Ayellet V. Segrè, Timothy J. Sullivan, Taylor Young, Ellen Gelfand, Casandra A. Trowbridge, Julian Maller, Taru Tukiainen, Monkol Lek, Lucas D. Ward, Pouya Kheradpour, Benjamin Iriarte, Yan Meng, Cameron D. Palmer, Wendy Winckler, Joel N. Hirschhorn, Manolis Kellis, Daniel G. MacArthur, Gad Getz, Andrey A. Shablin, Gen Li, Yi‐Hui Zhou, Andrew B. Nobel, Ivan Rusyn, Fred A. Wright, Tuuli Lappalainen, Pedro G. Ferreira, Halit Ongen, Manuel A. Rivas, Alexis Battle, Sara Mostafavi, Jean Monlong, Michael Sammeth, Marta Melé, Ferrán Reverter, Jakob M. Goldmann, Daphne Koller, Roderic Guigó, Mark I. McCarthy, Emmanouil T. Dermitzakis, Eric R. Gamazon, Anuar Konkashbaev, Dan L. Nicolae, Nancy J. Cox, Timothée Flutre, Xiaoquan Wen, Matthew Stephens, Jonathan K. Pritchard, Luan Lin, Jun S. Liu, Amanda Brown, Bernadette Mestichelli, Denee Tidwell, Edmund Lo, Mike Salvatore, Saboor Shad, Jeffrey A. Thomas, John T. Lonsdale, Christopher Choi, Ellen Karasik, Kimberly Ramsey, Michael T. Moser, Barbara A. Foster, Bryan M. Gillard, John Syron, Johnelle Fleming, Harold I. Magazine, Rick Hasz, Gary Walters, Jason Bridge, Mark Miklos, Susan Sullivan, Laura K. Barker, Heather M. Traino, Magboeba Mosavel, Laura A. Siminoff, Dana R. Valley, Daniel C. Rohrer, Scott Jewel, Philip A. Branton, Leslie H. Sobin, Liqun Qi, Pushpa Hariharan, Shenpei Wu, David E. Tabor, Charles Shive, Anna M. Smith, Stephen A. Buia and 34 more - Scientific Reports 2016 cited by 722

19. TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

    Authors: Philippe Leroy, Nicolas Guilhot, Hiroaki Sakai, Aurélien Bernard, Frédéric Choulet, Sébastien Theil, Sébastien Reboux, Naoki Amano, Timothée Flutre, Céline Pelegrin, Hajime Ohyanagi, Michael Seidel, Franck Giacomoni, Mathieu Reichstadt, Michaël Alaux, Emmanuelle Gicquello, Fabrice Legeai, Lorenzo Cerutti, Hisataka Numa, Tsuyoshi Tanaka, Klaus Mayer, Takeshi Itoh, Hadi Quesneville, Catherine Feuillet - Frontiers in Plant Science 2012 cited by 76

All 19 papers shown.