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Ulaş Karaöz

Active 2004–2025

Also published as
Ulas Karaoz
28
Papers
18,715
Citations
26
h-index
27
i10-index

Citations

Citations per year for Ulaş Karaöz1992: 2 citations1996: 1 citations1998: 1 citations1999: 1 citations2000: 1 citations2004: 2 citations2005: 12 citations2006: 14 citations2007: 95 citations2008: 194 citations2009: 201 citations2010: 266 citations2011: 359 citations2012: 334 citations2013: 304 citations2014: 277 citations2015: 299 citations2016: 255 citations2017: 286 citations2018: 298 citations2019: 592 citations2020: 569 citations2021: 595 citations2022: 434 citations2023: 299 citations2024: 448 citations2025: 223 citations2026: 10 citations1993–1995: no citations, so these years are not shown1997: no citations, so this year is not shown2001–2003: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,104 citing papers, 31.3% of this breakdownChina: 1,237 citing papers, 12.5% of this breakdownUnited Kingdom: 599 citing papers, 6% of this breakdownGermany: 581 citing papers, 5.9% of this breakdownCanada: 354 citing papers, 3.6% of this breakdownFrance: 330 citing papers, 3.3% of this breakdownAustralia: 318 citing papers, 3.2% of this breakdownJapan: 305 citing papers, 3.1% of this breakdownItaly: 272 citing papers, 2.7% of this breakdownSpain: 221 citing papers, 2.2% of this breakdownNetherlands: 213 citing papers, 2.2% of this breakdownSwitzerland: 196 citing papers, 2% of this breakdown
0%31.3%Other 22%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology59.3%
  • Medicine12.9%
  • Immunology and Microbiology8.2%
  • Environmental Science7.4%
  • Agricultural and Biological Sciences7.2%
  • Neuroscience1.2%
  • Other3.8%

Topics

  • Gut microbiota and health10.8%
  • Cancer-related molecular mechanisms research3.6%
  • Clostridium difficile and Clostridium perfringens research3.5%
  • Genomics and Phylogenetic Studies3.4%
  • RNA modifications and cancer3.2%
  • Microbial Community Ecology and Physiology3.1%
  • Other72.4%

Coauthors

All papers

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  1. Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

    Authors: Ivaylo I. Ivanov, Koji Atarashi, Nicolas Manel, Eoin Brodie, Tatsuichiro Shima, Ulaş Karaöz, Dongguang Wei, Katherine C. Goldfarb, Clark A. Santee, Susan V. Lynch, Takeshi Tanoue, Akemi Imaoka, Kikuji Itoh, Kiyoshi Takeda, Yoshinori Umesaki, Kenya Honda, Dan R. Littman - Cell 2009 cited by 4,555

  2. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

    Authors: Kateryna Zhalnina, Katherine Louie, Zhao Hao, Nasim Mansoori, Ulisses Nunes da Rocha, Shengjing Shi, Heejung Cho, Ulaş Karaöz, Dominique Loqué, Benjamin P. Bowen, Mary K. Firestone, Trent R. Northen, Eoin Brodie - Nature Microbiology 2018 cited by 2,331

  3. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Authors: Fabio Pardi, Damian Keefe, Benedict Paten, Tim Massingham, Simon Whelan, Abel Ureta‐Vidal, Ari Löytynoja, Paul Flicek, Ewan Birney, Simon Whelan, Ewan Birney, Nick Goldman, Robert E. Thurman, Fidencio Neri, Shane Neph, Kirsten Lee, Jeff Goldy, Anthony Shafer, Michael O. Dorschner, Molly Weaver, Richard Sandstrom, J Stamatoyannopoulos, Andrew Haydock, Richard Sandstrom, William Stafford Noble, J Stamatoyannopoulos, Nathan Day, Richard Humbert, J Stamatoyannopoulos, Peter J. Sabo, Anindya Dutta, Ankit Malhotra, Neerja Karnani, Christopher M. Taylor, Roderic Guigó, Anindya Dutta, Patrick J. Boyle, Man Yu, Tyler Alioto, Josep F. Abril, Roderic Guigó, Eduardo Eyras, Núria López-Bigas, Philipp Kapranov, Josep F. Abril, Robert Castelo, Julien Lagarde, Jorg Drenkow, Eduardo Eyras, Srinka Ghosh, Evelyn J. Cheung, David A. Nix, Philipp Kapranov, Madhavan Ganesh, Ian Bell, Jill Cheng, Sylvain Foissac, Eric D. Green, Hari Tammana, Jörg Drenkow, T Gingeras, Valerie V.B. Maduro, Sujit Dike, T Gingeras, Yutao Fu, Ulaş Karaöz, Francis S. Collins, Valerie V. Maduro, Elliott H. Margulies, Eric D. Green, Hennady P. Shulha, Elliott H. Margulies, Jacquelyn R. Idol, Michael Snyder, Anason Halees, Xiaoling Zhang, Mousheng Xu, Ulaş Karaöz, Alexander E. Urban, Yutao Fu, Joel Rozowsky, Hennady P. Shulha, Yong Yu, Jaafar N. Haidar, Mark Gerstein, Jane M. Lin, Ghia Euskirchen, Jiaqian Wu, Ugrappa Nagalakshmi, M Snyder, Stephen E. Hartman, Peter R. Kraus, Pawandeep Dhami, Alexander E. Urban, Deyou Zheng, Joel Rozowsky, David Vetrie, Zhengdong D. Zhang, Ian Dunham, Michael Seringhaus and 212 more - Nature 2007 cited by 5,283

  4. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

    Authors: Karthik Anantharaman, Christopher T. Brown, Laura Hug, Itai Sharon, Cindy J. Castelle, Alexander J. Probst, Brian C. Thomas, Andrea Singh, Michael J. Wilkins, Ulaş Karaöz, Eoin Brodie, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield - Nature Communications 2016 cited by 1,236

  5. Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

    Authors: Javier A. Ceja-Navarro, Fernando E. Vega, Ulaş Karaöz, Zhao Hao, Stefan Jenkins, Hsiao Chien Lim, Petr Kosina, Francisco Infante, Trent R. Northen, Eoin Brodie - Nature Communications 2015 cited by 538

  6. Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

    Authors: Ramya Srinivasan, Ulaş Karaöz, Marina P. Volegova, Joanna K. MacKichan, Midori Kato‐Maeda, Steve Miller, Rohan Nadarajan, Eoin Brodie, Susan V. Lynch - PLoS ONE 2015 cited by 467

  7. microTrait: A Toolset for a Trait-Based Representation of Microbial Genomes

    Authors: Ulas Karaoz, Eoin L. Brodie - Frontiers in Bioinformatics, Frontiers Bioinform. 2022 cited by 86

  8. Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem

    Authors: Clément Coclet, Patrick O. Sorensen, Ulaş Karaöz, Shi Wang, Eoin Brodie, Emiley A. Eloe‐Fadrosh, Simon Roux - Microbiome 2023 cited by 56

  9. Structure of the human gastric bacterial community in relation to Helicobacter pylori status

    Authors: Ana Maldonado‐Contreras, Kate C. Goldfarb, Filipa Godoy‐Vitorino, Ulaş Karaöz, Mónica Contreras, Martin J. Blaser, Eoin Brodie, Maria Gloria Domínguez-Bello - The ISME Journal 2010 cited by 298

  10. Exometabolite niche partitioning among sympatric soil bacteria

    Authors: Richard Baran, Eoin Brodie, Jazmine Mayberry-Lewis, Eric Hummel, Ulisses Nunes da Rocha, Romy Chakraborty, Benjamin P. Bowen, Ulaş Karaöz, Hinsby Cadillo‐Quiroz, Ferrán García‐Pichel, Trent R. Northen - Nature Communications 2015 cited by 232

  11. To rarefy or not to rarefy: robustness and efficiency trade-offs of rarefying microbiome data

    Authors: Johnny Hong, Ulas Karaoz, Perry de Valpine, William Fithian - Bioinformatics, Bioinform. 2022 cited by 51

  12. Progressive dysbiosis of human orodigestive microbiota along the sequence of gastroesophageal reflux, Barrett's esophagus and esophageal adenocarcinoma

    Authors: Yuhan Hao, Ulaş Karaöz, Liying Yang, Patrick Yachimski, Wenzhi Tseng, Carlos W. Nossa, Weimin Ye, Mengkao Tseng, Michael A. Poles, Fritz François, Morris Traube, Stuart M. Brown, Yu Chen, Manolito Torralba, Richard M. Peek, Eoin Brodie, Zhiheng Pei - International Journal of Cancer 2022 cited by 34

  13. Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial

    Authors: Christina Balle, Iyaloo N. Konstantinus, Shameem Z. Jaumdally, Enock Havyarimana, Katie Lennard, Rachel Esra, Shaun Barnabas, Anna‐Ursula Happel, Zoe Moodie, Katherine Gill, Tanya Pidwell, Ulaş Karaöz, Eoin Brodie, Venessa Maseko, Hoyam Gamieldien, Steven E. Bosinger, Landon Myer, Linda‐Gail Bekker, Jo‐Ann S. Passmore, Heather B. Jaspan - Nature Communications 2020 cited by 58

  14. The landscape of histone modifications across 1% of the human genome in five human cell lines

    Authors: Christof Koch, Robert Andrews, Paul Flicek, Shane C. Dillon, Ulaş Karaöz, Gayle K. Clelland, Sarah Wilcox, David Beare, Joanna C. Fowler, Philippe Couttet, Keith James, Grégory Lefebvre, Alexander W. Bruce, Oliver M. Dovey, Peter Ellis, Pawandeep Dhami, Cordelia F. Langford, Zhiping Weng, Ewan Birney, Nigel P. Carter, David Vetrie, Ian Dunham - Genome Research 2007 cited by 446

  15. Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

    Authors: Katherine C. Goldfarb, Ulaş Karaöz, China A. Hanson, Clark A. Santee, Mark A. Bradford, Kathleen K. Treseder, Matthew D. Wallenstein, Eoin Brodie - Frontiers in Microbiology 2011 cited by 664

  16. Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients

    Authors: Michael J. Cox, Martin Allgaier, Byron Taylor, Marshall Baek, Yvonne J. Huang, Rebecca A. Daly, Ulaş Karaöz, Gary L. Andersen, Ronald C. Brown, Kei E. Fujimura, Brian H. Wu, Diem Tran, Jonathan L. Koff, Mary Ellen Kleinhenz, Dennis W. Nielson, Eoin Brodie, Susan V. Lynch - PLoS ONE 2010 cited by 453

  17. Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

    Authors: Filipa Godoy‐Vitorino, Katherine C. Goldfarb, Ulaş Karaöz, Sara J. Leal, María Alexandra García-Amado, Philip Hugenholtz, Susannah G. Tringe, Eoin Brodie, María Gloria Domínguez-Bello - The ISME Journal 2011 cited by 209

  18. Presence and Persistence of Putative Lytic and Temperate Bacteriophages in Vaginal Metagenomes from South African Adolescents

    Authors: Anna‐Ursula Happel, Christina Balle, Brandon S. Maust, Iyaloo N. Konstantinus, Katherine Gill, Linda‐Gail Bekker, Rémy Froissart, Jo‐Ann S. Passmore, Ulaş Karaöz, Arvind Varsani, Heather B. Jaspan - Viruses 2021 cited by 24

  19. A framework for integrating genomics, microbial traits, and ecosystem biogeochemistry

    Authors: Zhen Li, W. J. Riley, Gianna L. Marschmann, Ulaş Karaöz, Ian Shirley, Qiong Wu, Nicholas Bouskill, Kuang‐Yu Chang, Patrick Crill, R. F. Grant, Eric King, S. R. Saleska, Matthew B. Sullivan, Jinyun Tang, R. K. Varner, Ben J. Woodcroft, Kelly Wrighton, Eoin Brodie - Nature Communications 2025 cited by 30

  20. Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria

    Authors: Alexander B. Chase, Philip Arevalo, Eoin Brodie, Martin F. Polz, Ulaş Karaöz, Jennifer B. H. Martiny - mBio 2019 cited by 29

  21. A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae

    Authors: Paulo César Silva, Javier A. Ceja-Navarro, Flávio Azevedo, Ulaş Karaöz, Eoin Brodie, B. Johansson - Scientific Reports 2021 cited by 28

  22. METABOLIC: High-Throughput Profiling of Microbial Genomes for Functional Traits, Metabolism, Biogeochemistry, and Community-scale Functional Networks

    Authors: Zhichao Zhou, Patricia Q. Tran, Adam M. Breister, Yang Liu, Kristopher Kieft, Elise S. Cowley, Ulaş Karaöz, Karthik Anantharaman - Microbiome 2021 cited by 632

  23. Human Papillomavirus Community in Healthy Persons, Defined by Metagenomics Analysis of Human Microbiome Project Shotgun Sequencing Data Sets

    Authors: Yingfei Ma, Ramana Madupu, Ulaş Karaöz, Carlos W. Nossa, Liying Yang, Shibu Yooseph, Patrick Yachimski, Eoin Brodie, Karen E. Nelson, Zhiheng Pei - Journal of Virology 2014 cited by 132

  24. Whole-genome annotation by using evidence integration in functional-linkage networks

    Authors: Ulaş Karaöz, T. M. Murali, Stan Letovsky, Yu Zheng, Chunming Ding, Charles R. Cantor, Simon Kasif - National Academy of Sciences, Proceedings of the National Academy of Sciences 2004 cited by 323