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John D. Chodera

1992–2025 年に発表

127
論文数
25,274
被引用数
69
h 指数
118
i10 指数

被引用数

John D. Chodera の年別被引用数1970 年: 被引用 2 件1973 年: 被引用 2 件1974 年: 被引用 1 件1983 年: 被引用 1 件1986 年: 被引用 1 件1992 年: 被引用 3 件1993 年: 被引用 2 件1996 年: 被引用 4 件1999 年: 被引用 1 件2000 年: 被引用 1 件2001 年: 被引用 1 件2003 年: 被引用 2 件2004 年: 被引用 1 件2005 年: 被引用 11 件2006 年: 被引用 6 件2007 年: 被引用 40 件2008 年: 被引用 63 件2009 年: 被引用 111 件2010 年: 被引用 153 件2011 年: 被引用 180 件2012 年: 被引用 184 件2013 年: 被引用 181 件2014 年: 被引用 234 件2015 年: 被引用 236 件2016 年: 被引用 309 件2017 年: 被引用 293 件2018 年: 被引用 340 件2019 年: 被引用 708 件2020 年: 被引用 847 件2021 年: 被引用 1,222 件2022 年: 被引用 992 件2023 年: 被引用 809 件2024 年: 被引用 1,031 件2025 年: 被引用 705 件2026 年: 被引用 95 件1971〜1972 年は被引用が無いため表示していません1975〜1982 年は被引用が無いため表示していません1984〜1985 年は被引用が無いため表示していません1987〜1991 年は被引用が無いため表示していません1994〜1995 年は被引用が無いため表示していません1997〜1998 年は被引用が無いため表示していません2002 年は被引用が無いため表示していません

引用元

国・地域

この著者を引用した国・地域の世界地図アメリカ合衆国: 引用元論文 3,108 件、この内訳の 31.7%中国: 引用元論文 854 件、この内訳の 8.7%ドイツ: 引用元論文 759 件、この内訳の 7.7%イギリス: 引用元論文 687 件、この内訳の 7%フランス: 引用元論文 359 件、この内訳の 3.7%イタリア: 引用元論文 325 件、この内訳の 3.3%スイス: 引用元論文 312 件、この内訳の 3.2%カナダ: 引用元論文 246 件、この内訳の 2.5%スペイン: 引用元論文 219 件、この内訳の 2.2%インド: 引用元論文 203 件、この内訳の 2.1%日本: 引用元論文 194 件、この内訳の 2%スウェーデン: 引用元論文 191 件、この内訳の 2%
0%31.7%その他 23.9%

機関

分野

  • Biochemistry, Genetics and Molecular Biology43.9%
  • Medicine20.2%
  • Computer Science14.7%
  • Physics and Astronomy6.1%
  • Materials Science5.6%
  • Chemistry3.5%
  • その他6%

トピック

  • Protein Structure and Dynamics13.8%
  • Computational Drug Discovery Methods8.4%
  • SARS-CoV-2 and COVID-19 Research4%
  • Enzyme Structure and Function3.4%
  • Machine Learning in Materials Science3.4%
  • Spectroscopy and Quantum Chemical Studies3.2%
  • その他63.8%

共著者

全論文

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  1. Statistically optimal analysis of samples from multiple equilibrium states

    著者: Michael R. Shirts, John D. Chodera - The Journal of Chemical Physics 2008 被引用: 1,992

  2. Markov models of molecular kinetics: Generation and validation

    著者: Jan-Hendrik Prinz, Hao Wu, Marco Sarich, Bettina G. Keller, Martin Senne, Martin Held, John D. Chodera, Christof Schütte, Frank Noé - The Journal of Chemical Physics 2011 被引用: 1,347

  3. MEN1 mutations mediate clinical resistance to menin inhibition

    著者: Florian Perner, Eytan M. Stein, Daniela V. Wenge, Sukrit Singh, Jeonghyeon Kim, Athina Apazidis, Homa Rahnamoun, Disha Anand, Christian Marinaccio, Charlie Hatton, Yanhe Wen, Richard M. Stone, David Schaller, Shoron Mowla, Wenbin Xiao, Holly A. Gamlen, Aaron J. Stonestrom, Sonali Persaud, Elizabeth T. Ener, Jevon Cutler, John G. Doench, Gerard M. McGeehan, Andrea Volkamer, John D. Chodera, Radosław P. Nowak, Eric S. Fischer, Ross L. Levine, Scott A. Armstrong, Sheng F. Cai - Nature 2023 被引用: 243

  4. SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape

    著者: Tyler N. Starr, Nadine Czudnochowski, Zhuoming Liu, Fabrizia Zatta, Young‐Jun Park, Amin Addetia, Dora Pinto, Martina Beltramello, Patrick Hernandez, Allison J. Greaney, Roberta Marzi, William G. Glass, Ivy Zhang, Adam S. Dingens, John E. Bowen, M. Alejandra Tortorici, Alexandra C. Walls, Jason A. Wojcechowskyj, Anna De Marco, Laura E. Rosen, Jiayi Zhou, Martin Montiel-Ruiz, Hannah Kaiser, Josh R. Dillen, Heather Tucker, Jessica Bassi, Chiara Silacci-Fregni, Michael P. Housley, Julia di Iulio, Gloria Lombardo, Maria L. Agostini, Nicole Sprugasci, Katja Culap, Stefano Jaconi, Marcel Meury, Exequiel Dellota, Rana Abdelnabi, Caroline S. Foo, Elisabetta Cameroni, Spencer Stumpf, Tristan I. Croll, Jay C. Nix, Colin Havenar‐Daughton, Luca Piccoli, Fabio Benigni, Johan Neyts, Amalio Telenti, Florian A. Lempp, Matteo Samuele Pizzuto, John D. Chodera, Christy M. Hebner, Herbert W. Virgin, Sean P. J. Whelan, David Veesler, Davide Corti, Jesse D. Bloom, Gyorgy Snell - Nature 2021 被引用: 600

  5. Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors

    著者: Melissa L. Boby, D. Fearon, Matteo P. Ferla, Mihajlo Filep, L. Koekemoer, Matthew C. Robinson, John D. Chodera, Alpha A. Lee, Nir London, Annette von Delft, F. von Delft, Hagit Achdout, A. Aimon, Dominic S. Alonzi, Robert Arbon, J.C. Aschenbrenner, Blake Balcomb, Elad Bar-David, Haim Barr, Amir Ben‐Shmuel, James M. Bennett, Vitaliy A. Bilenko, Bruce Borden, Pascale Boulet, Gregory R. Bowman, Lennart Brewitz, Juliane Brun, Sarma BVNBS, Mark Calmiano, Anna Carbery, Daniel W. Carney, Emma Cattermole, Edcon Chang, Eugene Chernyshenko, Austin Clyde, Joseph E. Coffland, Galit Cohen, Jason C. Cole, Alessandro Contini, Lisa Sanderson Cox, Tristan I. Croll, Milan Cvitkovic, Steven De Jonghe, Alex Dias, Kim Donckers, David Dotson, A. Douangamath, Shirly Duberstein, Tim Dudgeon, Louise E. Dunnett, Peter Eastman, Noam Erez, Charles J. Eyermann, M. Fairhead, Gwen Fate, O. Fedorov, R.S. Fernandes, Lori Ferrins, Richard Foster, Holly Foster, Laurent Fraisse, Ronen Gabizon, Adolfo García‐Sastre, Victor O. Gawriljuk, Paul Gehrtz, C. Gileadi, Charline Giroud, William G. Glass, Robert C. Glen, Itai Glinert, André S. Godoy, Marian V. Gorichko, T.J. Gorrie-Stone, Ed Griffen, Amna Haneef, Storm Hassell Hart, Jag Heer, Michael M. Henry, Michelle L. Hill, Sam Horrell, Qiu Yu J. Huang, Victor D. Huliak, Matthew F. D. Hurley, Tomer Israely, Andrew J. Jajack, Jitske Jansen, Eric Jnoff, Dirk Jochmans, Tobias John, Benjamin Kaminow, Lulu Kang, A.L. Kantsadi, Peter W. Kenny, J. L. Kiappes, Serhii O. Kinakh, Boris Kovar, T. Krojer, Van Ngoc Thuy La, Sophie Laghnimi-Hahn, Bruce A. Lefker ほか 118 名 - Science 2023 被引用: 175

  6. Best Practices for Alchemical Free Energy Calculations [Article v1.0].

    著者: Antonia S. J. S. Mey, Bryce K. Allen, Hannah E. Bruce Macdonald, John D. Chodera, David F. Hahn, Maximilian Kühn, Julien Michel, David L. Mobley, Levi N. Naden, Samarjeet Prasad, Andrea Rizzi, Jenke Scheen, Michael R. Shirts, Gary Tresadern, Huafeng Xu - Living Journal of Computational Molecular Science 2019 被引用: 270

  7. Current Status of the AMOEBA Polarizable Force Field

    著者: Jay W. Ponder, Chuanjie Wu, Pengyu Ren, Vijay S. Pande, John D. Chodera, Michael J. Schnieders, Imran S. Haque, David L. Mobley, Daniel S. Lambrecht, Robert A. DiStasio, Martin Head‐Gordon, Gary N. I. Clark, Margaret E. Johnson, Teresa Head‐Gordon - The Journal of Physical Chemistry B 2010 被引用: 1,481

  8. Ensemble Docking in Drug Discovery

    著者: Rommie E. Amaro, Jérôme Baudry, John D. Chodera, Özlem Demir, J. Andrew McCammon, Yinglong Miao, Jeremy C. Smith - Biophysical Journal 2018 被引用: 496

  9. Markov state models of biomolecular conformational dynamics

    著者: John D. Chodera, Frank Noé - Current Opinion in Structural Biology 2014 被引用: 836

  10. Hypoxia Induces Production of L-2-Hydroxyglutarate

    著者: Andrew M. Intlekofer, Raymond G. Dematteo, Sriram Venneti, Lydia W.S. Finley, Chao Lü, Alexander R. Judkins, Ariën S. Rustenburg, Patrick Grinaway, John D. Chodera, Justin R. Cross, Craig B. Thompson - Cell Metabolism 2015 被引用: 510

  11. CACHE (Critical Assessment of Computational Hit-finding Experiments): A public–private partnership benchmarking initiative to enable the development of computational methods for hit-finding

    著者: Suzanne Ackloo, Rima Al‐awar, Rommie E. Amaro, C.H. Arrowsmith, Hatylas Azevedo, Robert A. Batey, Yoshua Bengio, Ulrich A. K. Betz, Cristian Bologa, John D. Chodera, Wendy D. Cornell, Ian Dunham, Gerhard F. Ecker, Kristina Edfeldt, A.M. Edwards, Michael K. Gilson, Cláudia R. Gordijo, Gerhard Heßler, Alexander Hillisch, Anders Hogner, John J. Irwin, Johanna M. Jansen, Daniel Kühn, Andrew R. Leach, Alpha A. Lee, Uta Lessel, Maxwell R. Morgan, John Moult, Ingo Muegge, Tudor I. Oprea, Benjamin Perry, Patrick Riley, Sophie A. L. Rousseaux, Kumar Singh Saikatendu, Vijayaratnam Santhakumar, Matthieu Schapira, Cora Scholten, Matthew H. Todd, Masoud Vedadi, Andrea Volkamer, Timothy M. Willson - Nature Reviews Chemistry 2022 被引用: 102

  12. OpenMM 7: Rapid development of high performance algorithms for molecular dynamics

    著者: Peter K. Eastman, Jason M. Swails, John D. Chodera, Robert McGibbon, Yutong Zhao, Kyle Beauchamp, Lee-Ping Wang, Andrew C. Simmonett, Matthew P. Harrigan, Chaya D. Stern, Rafal P. Wiewiora, Bernard R. Brooks, Vijay S. Pande - PLoS Computational Biology, PLoS Comput. Biol. 2016 被引用: 2,763

  13. SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome

    著者: Maxwell I. Zimmerman, Justin R. Porter, Michael D. Ward, Sukrit Singh, Neha Vithani, Artur Meller, Upasana L. Mallimadugula, Catherine E. Kuhn, Jonathan Borowsky, Rafal Wiewiora, Matthew F. D. Hurley, Aoife M. Harbison, Carl A. Fogarty, Joseph E. Coffland, Elisa Fadda, Vincent A. Voelz, John D. Chodera, Gregory R. Bowman - Nature Chemistry 2021 被引用: 301

  14. OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation

    著者: Peter Eastman, Mark S. Friedrichs, John D. Chodera, Randall J. Radmer, Christopher M. Bruns, Joy P. Ku, Kyle A. Beauchamp, Thomas J. Lane, Lee‐Ping Wang, Diwakar Shukla, Tony Tye, Mike Houston, Timo Stich, Christoph Klein, Michael R. Shirts, Vijay S. Pande - Journal of Chemical Theory and Computation 2012 被引用: 750

  15. INK4 Tumor Suppressor Proteins Mediate Resistance to CDK4/6 Kinase Inhibitors

    著者: Qing Li, Baishan Jiang, Jiaye Guo, Hong Shao, Isabella Del Priore, Qing Chang, Rei Kudo, Zhiqiang Li, Pedram Razavi, Bo Liu, Andrew S. Boghossian, Matthew G. Rees, Melissa M. Ronan, Jennifer A. Roth, Katherine A. Donovan, Marta Palafox, Jorge S. Reis‐Filho, Elisa de Stanchina, Eric S. Fischer, Neal Rosen, Violeta Serra, Andrew Koff, John D. Chodera, Nathanael S. Gray, Sarat Chandarlapaty - Cancer Discovery 2021 被引用: 165

  16. NNP/MM: Accelerating Molecular Dynamics Simulations with Machine Learning Potentials and Molecular Mechanics

    著者: Raimondas Galvelis, Alejandro Varela-Rial, Stefan Doerr, Roberto Fino, Peter K. Eastman, Thomas E. Markland, John D. Chodera, Gianni De Fabritiis - Journal of Chemical Information and Modeling, J. Chem. Inf. Model. 2023 被引用: 90

  17. Alchemical free energy methods for drug discovery: progress and challenges

    著者: John D. Chodera, David L. Mobley, Michael R. Shirts, R. W. Dixon, Kim Branson, Vijay S. Pande - Current Opinion in Structural Biology 2011 被引用: 586

  18. Development and Benchmarking of Open Force Field v1.0.0—the Parsley Small-Molecule Force Field

    著者: Yudong Qiu, Daniel G. A. Smith, Simon Boothroyd, Hyesu Jang, David F. Hahn, Jeffrey Wagner, Caitlin C. Bannan, Trevor Gokey, Victoria T. Lim, Chaya Stern, Andrea Rizzi, Bryon Tjanaka, Gary Tresadern, Xavier Lucas, Michael R. Shirts, Michael K. Gilson, John D. Chodera, Christopher I. Bayly, David L. Mobley, Lee‐Ping Wang - Journal of Chemical Theory and Computation 2021 被引用: 170

  19. L-2-Hydroxyglutarate production arises from noncanonical enzyme function at acidic pH

    著者: Andrew M. Intlekofer, Bo Wang, Hui Liu, Hardik Shah, Carlos Carmona‐Fontaine, Ariën S. Rustenburg, Salah Salah, M. R. Gunner, John D. Chodera, Justin R. Cross, Craig B. Thompson - Nature Chemical Biology 2017 被引用: 270

  20. Entropy-Enthalpy Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design

    著者: John D. Chodera, David L. Mobley - Annual Review of Biophysics 2013 被引用: 537

  21. End-to-end differentiable construction of molecular mechanics force fields

    著者: Yuanqing Wang, Josh Fass, Benjamin Kaminow, John E. Herr, Dominic A. Rufa, Ivy Zhang, Iván Pulido, Michael M. Henry, Hannah E. Bruce Macdonald, Kenichiro Takaba, John D. Chodera - Chemical Science 2022 被引用: 90

  22. Acquired resistance to IDH inhibition through trans or cis dimer-interface mutations

    著者: Andrew M. Intlekofer, Alan H. Shih, Bo Wang, Abbas Nazir, Ariën S. Rustenburg, Steven K. Albanese, Minal Patel, Christopher Famulare, Fabian Correa, Naofumi Takemoto, Vidushi Durani, Hui Liu, Justin Taylor, Noushin Farnoud, Elli Papaemmanuil, Justin R. Cross, Martin S. Tallman, Maria E. Arcila, Mikhail Roshal, Gregory A. Petsko, Bin Wu, Sung Choe, Zenon Konteatis, Scott A. Biller, John D. Chodera, Craig B. Thompson, Ross L. Levine, Eytan M. Stein - Nature 2018 被引用: 280

  23. Best Practices for Constructing, Preparing, and Evaluating Protein-Ligand Binding Affinity Benchmarks [Article v1.0]

    著者: David F. Hahn, Christopher I. Bayly, Melissa L. Boby, Hannah E. Bruce Macdonald, John D. Chodera, Vytautas Gapsys, Antonia S. J. S. Mey, David L. Mobley, Laura Pérez‐Benito, Christina Schindler, Gary Tresadern, Gregory L. Warren - Living Journal of Computational Molecular Science 2022 被引用: 81

  24. Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

    著者: Emma C. Thomson, Laura E. Rosen, James G. Shepherd, Roberto Spreafico, Ana da Silva Filipe, Jason A. Wojcechowskyj, Christopher Davis, Luca Piccoli, David J. Pascall, Josh R. Dillen, Spyros Lytras, Nadine Czudnochowski, Rajiv Shah, Marcel Meury, Natasha Jesudason, Anna De Marco, Kathy Li, Jessica Bassi, Áine O’Toole, Dora Pinto, Rachel Colquhoun, Katja Culap, Ben Jackson, Fabrizia Zatta, Andrew Rambaut, Stefano Jaconi, Vattipally B. Sreenu, Jay C. Nix, Ivy Zhang, Ruth F. Jarrett, William G. Glass, Martina Beltramello, Kyriaki Nomikou, Matteo Samuele Pizzuto, L. Tong, Elisabetta Cameroni, Tristan I. Croll, Natasha Johnson, Julia di Iulio, Arthur Wickenhagen, Alessandro Ceschi, Aoife M. Harbison, Daniel Mair, Paolo Ferrari, Katherine Smollett, Federica Sallusto, Stephen Carmichael, Christian Garzoni, Jenna Nichols, Massimo Galli, Joseph Hughes, Agostino Riva, Antonia Ho, Marco Schiuma, Malcolm G. Semple, Peter Openshaw, Elisa Fadda, J. Kenneth Baillie, John D. Chodera, Suzannah J. Rihn, Samantha Lycett, Herbert W. Virgin, Amalio Telenti, Davide Corti, David L. Robertson, Gyorgy Snell - Cell 2021 被引用: 660