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Pedro Mendes

Active 1988–2026

119
Papers
22,052
Citations
50
h-index
81
i10-index

Citations

Citations per year for Pedro Mendes1967: 1 citations1975: 2 citations1984: 1 citations1986: 1 citations1988: 1 citations1989: 3 citations1991: 1 citations1992: 1 citations1996: 3 citations1997: 4 citations1998: 6 citations1999: 7 citations2000: 23 citations2001: 33 citations2002: 54 citations2003: 94 citations2004: 191 citations2005: 238 citations2006: 378 citations2007: 384 citations2008: 358 citations2009: 449 citations2010: 457 citations2011: 383 citations2012: 341 citations2013: 513 citations2014: 438 citations2015: 437 citations2016: 477 citations2017: 400 citations2018: 409 citations2019: 572 citations2020: 570 citations2021: 523 citations2022: 375 citations2023: 327 citations2024: 373 citations2025: 191 citations2026: 24 citations1968–1974: no citations, so these years are not shown1976–1983: no citations, so these years are not shown1985: no citations, so this year is not shown1987: no citations, so this year is not shown1990: no citations, so this year is not shown1993–1995: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,232 citing papers, 20.6% of this breakdownUnited Kingdom: 1,231 citing papers, 11.4% of this breakdownGermany: 1,141 citing papers, 10.6% of this breakdownChina: 508 citing papers, 4.7% of this breakdownFrance: 503 citing papers, 4.7% of this breakdownItaly: 420 citing papers, 3.9% of this breakdownNetherlands: 367 citing papers, 3.4% of this breakdownSpain: 305 citing papers, 2.8% of this breakdownJapan: 294 citing papers, 2.7% of this breakdownCanada: 284 citing papers, 2.6% of this breakdownSwitzerland: 265 citing papers, 2.4% of this breakdownSweden: 239 citing papers, 2.2% of this breakdown
0%20.6%Other 28%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology66.8%
  • Computer Science8.8%
  • Medicine6.8%
  • Agricultural and Biological Sciences4.4%
  • Engineering2.4%
  • Decision Sciences2.2%
  • Other8.6%

Topics

  • Gene Regulatory Network Analysis10.7%
  • Microbial Metabolic Engineering and Bioproduction9.8%
  • Bioinformatics and Genomic Networks8.5%
  • Metabolomics and Mass Spectrometry Studies4.8%
  • Computational Drug Discovery Methods2.5%
  • Biomedical Text Mining and Ontologies2.2%
  • Other61.5%

Coauthors

All papers

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  1. ChEBI in 2016: Improved services and an expanding collection of metabolites

    Authors: Janna Hastings, Gareth I. Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 1,158

  2. COPASI - a COmplex PAthway SImulator

    Authors: Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer - Bioinformatics, Bioinform. 2006 cited by 2,694

  3. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

    Authors: Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang - Bioinformatics, Bioinform. 2003 cited by 3,150

  4. The metabolomics standards initiative (MSI)

    Authors: Oliver Fiehn, D. J. Robertson, Jules Griffin, Mariët Van Der Werf, Basil J. Nikolau, Norman Morrison, Lloyd W. Sumner, Royston Goodacre, Nigel Hardy, Chris Taylor, Jennifer Fostel, Bruce S. Kristal, Rima Kaddurah‐Daouk, Pedro Mendes, Ben van Ommen, John C. Lindon, Susanna‐Assunta Sansone - Metabolomics 2007 cited by 504

  5. A community-driven global reconstruction of human metabolism

    Authors: Ines Thiele, Neil Swainston, Ronan M. T. Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K. Aurich, Hulda S. Haraldsdóttir, Monica L. Mo, Óttar Rolfsson, Miranda D. Stobbe, Stefan Gretar Thorleifsson, Rasmus Ågren, Christian Bölling, Sergio Bordel, Arvind K. Chavali, Paul D. Dobson, Warwick B. Dunn, Lukas Endler, David Hala, Michael Hucka, Duncan Hull, Daniel Jameson, Neema Jamshidi, Jón J. Jónsson, Nick Juty, Sarah Keating, Intawat Nookaew, Nicolas Le Novère, Naglis Malys, Alexander Mazein, Jason A. Papin, Nathan D. Price, E Selkov, Martin I. Sigurðsson, Evangelos Simeonidis, Nikolaus Sonnenschein, Kieran Smallbone, Anatoly Sorokin, Hans van Beek, Dieter Weichart, Igor Goryanin, Jens Nielsen, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes, Bernhard Ø. Palsson - Nature Biotechnology 2013 cited by 1,069

  6. Recon 2.2: from reconstruction to model of human metabolism

    Authors: Neil Swainston, Kieran Smallbone, Hooman Hefzi, Paul D. Dobson, Judy McKinley Brewer, Michael Hanscho, Daniel C. Zielinski, Kok Siong Ang, Natalie J. Gardiner, Jahir M. Gutierrez, Sarantos Kyriakopoulos, Meiyappan Lakshmanan, Shangzhong Li, Joanne K. Liu, Verónica S. Martínez, Camila A. Orellana, Lake‐Ee Quek, Alex Thomas, Jürgen Zanghellini, Nicole Borth, Dong‐Yup Lee, Lars K. Nielsen, Douglas B. Kell, Nathan E. Lewis, Pedro Mendes - Metabolomics 2016 cited by 330

  7. Minimum information requested in the annotation of biochemical models (MIRIAM)

    Authors: Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne, Julio Collado‐Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul MF Nielsen, Herbert M. Sauro, Bruce E. Shapiro, Jacky L. Snoep, H. D. Spence, Barry L. Wanner - Nature Biotechnology 2005 cited by 635

  8. myo-Inositol Oxygenase Offers a Possible Entry Point into Plant Ascorbate Biosynthesis

    Authors: Argelia Lorence, Boris I. Chevone, Pedro Mendes, Craig L. Nessler - PLANT PHYSIOLOGY 2004 cited by 516

  9. Potential of metabolomics as a functional genomics tool

    Authors: R.J. Bino, Robert D. Hall, Oliver Fiehn, Joachim Kopka, Kazuki Saito, John Draper, Basil J. Nikolau, Pedro Mendes, Ute Roessner, Michael H. Beale, Richard N. Trethewey, B. Markus Lange, Eve Syrkin Wurtele, Lloyd W. Sumner - Trends in Plant Science 2004 cited by 785

  10. Discovery of meaningful associations in genomic data using partial correlation coefficients

    Authors: Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes - Bioinformatics, Bioinform. 2004 cited by 562

  11. COPASI and its applications in biotechnology

    Authors: Frank Bergmann, Stefan Hoops, Brian Klahn, Ursula Kummer, Pedro Mendes, Jürgen Pahle, Sven Sahle - Journal of Biotechnology 2017 cited by 111

  12. Path2Models: large-scale generation of computational models from biochemical pathway maps

    Authors: Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère - BMC Systems Biology, BMC Syst. Biol. 2013 cited by 181

  13. Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli

    Authors: Pierre Millard, Kieran Smallbone, Pedro Mendes - PLoS Computational Biology, PLoS Comput. Biol. 2017 cited by 125

  14. Zinc depletion regulates the processing and secretion of IL-1β

    Authors: Holly Summersgill, Hazel England, Gloria López‐Castejón, Catherine B. Lawrence, Nadia Luheshi, Jürgen Pahle, Pedro Mendes, David Brough - Cell Death and Disease 2014 cited by 107

  15. Plant metabolomics: large-scale phytochemistry in the functional genomics era

    Authors: Lloyd W. Sumner, Pedro Mendes, Richard A. Dixon - Phytochemistry 2003 cited by 1,073

  16. Computational Modeling of Biochemical Networks Using COPASI

    Authors: Pedro Mendes, Stefan Hoops, Sven Sahle, Ralph Gauges, Joseph O. Dada, Ursula Kummer - Methods in molecular biology 2009 cited by 212

  17. A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

    Authors: Markus J. Herrgård, Neil Swainston, Paul D. Dobson, Warwick B. Dunn, Kazım Yalçın Arğa, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana Paula Oliveira, Dina Petranović, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasié, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betül Kürdar, Merja Penttilä, Edda Klipp, Bernhard Ø. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell - Nature Biotechnology 2008 cited by 607

  18. Controlled vocabularies and semantics in systems biology

    Authors: Mélanie Courtot, Nick Juty, Christian Knüpfer, Dagmar Waltemath, Anna Zhukova, Andreas Dräger, Michel Dumontier, Andrew Finney, Martin Golebiewski, Janna Hastings, Stefan Hoops, Sarah Keating, Douglas B. Kell, Samuel Kerrien, James R. Lawson, Allyson Lister, James Lu, Rainer Machné, Pedro Mendes, Matthew Pocock, Nicolás Rodríguez, Alice Villéger, Darren J. Wilkinson, Sarala Wimalaratne, Camille Laibe, Michael Hucka, Nicolas Le Novère - Molecular Systems Biology 2011 cited by 331

  19. Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods

    Authors: Carmen G. Moles, Pedro Mendes, Julio R. Banga - Genome Research 2003 cited by 872

  20. Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

    Authors: Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz - Briefings in Bioinformatics, Briefings Bioinform. 2020 cited by 149

  21. Agent Based Models of Polymicrobial Biofilms and the Microbiome—A Review

    Authors: Sherli Koshy-Chenthittayil, Linda Archambault, Dhananjai Senthilkumar, Reinhard Laubenbacher, Pedro Mendes, Anna Dongari‐Bagtzoglou - Microorganisms 2021 cited by 28

  22. The origin of correlations in metabolomics data

    Authors: Diogo M. Camacho, Alberto de la Fuente, Pedro Mendes - Metabolomics 2005 cited by 282

  23. Multi-scale modelling and simulation in systems biology

    Authors: Joseph O. Dada, Pedro Mendes - Integrative Biology 2011 cited by 210

  24. A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes

    Authors: Kieran Smallbone, Hanan L. Messiha, Kathleen Carroll, Catherine Winder, Naglis Malys, Warwick B. Dunn, Ettore Murabito, Neil Swainston, Joseph O. Dada, Farid Khan, Pınar Pir, Evangelos Simeonidis, ‪Irena Spasić, Jill A. Wishart, Dieter Weichart, Neil W. Hayes, Daniel Jameson, David S. Broomhead, Stephen G. Oliver, Simon J. Gaskell, John E.G. McCarthy, Norman W. Paton, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes - FEBS Letters 2013 cited by 145