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Ines Thiele

Active 2004–2025

111
Papers
28,523
Citations
63
h-index
106
i10-index

Citations

Citations per year for Ines Thiele1986: 1 citations1988: 1 citations1989: 3 citations1990: 1 citations1992: 3 citations1993: 3 citations1994: 1 citations1996: 2 citations1998: 3 citations2002: 1 citations2005: 3 citations2006: 21 citations2007: 51 citations2008: 110 citations2009: 187 citations2010: 267 citations2011: 305 citations2012: 351 citations2013: 361 citations2014: 366 citations2015: 374 citations2016: 374 citations2017: 434 citations2018: 493 citations2019: 1,150 citations2020: 1,297 citations2021: 1,381 citations2022: 1,175 citations2023: 1,075 citations2024: 1,551 citations2025: 871 citations2026: 44 citations1987: no citations, so this year is not shown1991: no citations, so this year is not shown1995: no citations, so this year is not shown1997: no citations, so this year is not shown1999–2001: no citations, so these years are not shown2003–2004: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,624 citing papers, 21% of this breakdownChina: 1,292 citing papers, 10.4% of this breakdownUnited Kingdom: 850 citing papers, 6.8% of this breakdownGermany: 777 citing papers, 6.2% of this breakdownSpain: 424 citing papers, 3.4% of this breakdownItaly: 421 citing papers, 3.4% of this breakdownNetherlands: 399 citing papers, 3.2% of this breakdownFrance: 392 citing papers, 3.1% of this breakdownIndia: 325 citing papers, 2.6% of this breakdownCanada: 320 citing papers, 2.6% of this breakdownDenmark: 317 citing papers, 2.5% of this breakdownSweden: 312 citing papers, 2.5% of this breakdown
0%21%Other 32.3%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology69.1%
  • Medicine14.7%
  • Agricultural and Biological Sciences3.7%
  • Environmental Science1.7%
  • Computer Science1.6%
  • Immunology and Microbiology1.5%
  • Other7.7%

Topics

  • Microbial Metabolic Engineering and Bioproduction12%
  • Gut microbiota and health10.6%
  • Bioinformatics and Genomic Networks4.7%
  • Metabolomics and Mass Spectrometry Studies4.1%
  • Gene Regulatory Network Analysis4.1%
  • Biofuel production and bioconversion3.2%
  • Other61.3%

Coauthors

All papers

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  1. Gut microbiota functions: metabolism of nutrients and other food components

    Authors: Ian Rowland, Glenn R. Gibson, Almut Heinken, Karen P. Scott, Jonathan R. Swann, Ines Thiele, Kieran Tuohy - European Journal of Nutrition 2017 cited by 2,806

  2. What is flux balance analysis?

    Authors: Jeffrey D. Orth, Ines Thiele, Bernhard Ø. Palsson - Nature Biotechnology 2010 cited by 4,095

  3. Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

    Authors: Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, Sebastián N. Mendoza, Anne Richelle, Almut Heinken, Hulda S. Haraldsdóttir, Jacek Wachowiak, Sarah Keating, Vanja Vlasov, Stefanía Magnúsdóttir, Chiam Yu Ng, German Preciat, Alise Žagare, Siu Hung Joshua Chan, Maike K. Aurich, Catherine M. Clancy, Jennifer Modamio, John T. Sauls, Alberto Noronha, Aarash Bordbar, Benjamin Cousins, Diana C. El Assal, Luis V. Valcárcel, Iñigo Apaolaza, Susan Ghaderi, Masoud Ahookhosh, Marouen Ben Guebila, Andrejs Kostromins, Nicolas Sompairac, Hoai Minh Le, Ding Ma, Yuekai Sun, Lin Wang, James T. Yurkovich, Miguel A. P. Oliveira, Phan Tu Vuong, Lemmer P. El Assal, Inna Kuperstein, Andreï Zinovyev, H.S. Hinton, William A Bryant, Francisco J. Aragón Artacho, Francisco J. Planes, Egils Stalidzāns, Alejandro Maass, Santosh Vempala, Michael Hucka, Michael A. Saunders, Costas D. Maranas, Nathan E. Lewis, Thomas Sauter, Bernhard Ø. Palsson, Ines Thiele, Ronan M. T. Fleming - Nature Protocols 2019 cited by 1,366

  4. The gut microbial metabolite formate exacerbates colorectal cancer progression

    Authors: Dominik Ternes, Mina Tsenkova, Vitaly I. Pozdeev, Marianne Meyers, Eric Koncina, Sura Atatri, Martine Schmitz, Jessica Karta, Maryse Schmoetten, Almut Heinken, Fabien Rodriguez, Catherine Delbrouck, Anthoula Gaigneaux, Aurélien Ginolhac, Tam T. D. Nguyen, Léa Grandmougin, Audrey Frachet-Bour, Camille Martin‐Gallausiaux, Maria Pires Pacheco, Lorie Neuberger-Castillo, Paulo Miranda, Nikolaus Zuegel, Jean-Yves Ferrand, Manon Gantenbein, Thomas Sauter, Daniel J. Slade, Ines Thiele, Johannes Meiser, Serge Haan, Paul Wilmes, Elisabeth Letellier - Nature Metabolism 2022 cited by 305

  5. Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

    Authors: Almut Heinken, Johannes Hertel, Geeta Acharya, Dmitry A. Ravcheev, Malgorzata Nyga, Onyedika Emmanuel Okpala, Marcus Hogan, Stefanía Magnúsdóttir, Filippo Martinelli Boneschi, Bram Nap, German Preciat, Janaka N. Edirisinghe, Christopher S. Henry, Ronan M. T. Fleming, Ines Thiele - Nature Biotechnology 2023 cited by 281

  6. Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

    Authors: Stefanía Magnúsdóttir, Almut Heinken, Laura Kutt, Dmitry A. Ravcheev, Eugen Bauer, Alberto Noronha, Kacy Greenhalgh, Christian Jäger, Joanna Bagińska, Paul Wilmes, Ronan M. T. Fleming, Ines Thiele - Nature Biotechnology 2016 cited by 875

  7. Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

    Authors: Stefanía Magnúsdóttir, Dmitry A. Ravcheev, Valérie de Crécy‐Lagard, Ines Thiele - Frontiers in Genetics 2015 cited by 853

  8. Recon3D enables a three-dimensional view of gene variation in human metabolism

    Authors: Elizabeth Brunk, Swagatika Sahoo, Daniel C. Zielinski, Ali Altunkaya, Andreas Dräger, Nathan Mih, Francesco Gatto, Avlant Nilsson, German Preciat, Maike K. Aurich, Andreas Prlić, Anand V. Sastry, Anna Dröfn Daníelsdóttir, Almut Heinken, Alberto Noronha, Peter W. Rose, S.K. Burley, Ronan M. T. Fleming, Jens Nielsen, Ines Thiele, Bernhard Ø. Palsson - Nature Biotechnology 2018 cited by 823

  9. A protocol for generating a high-quality genome-scale metabolic reconstruction

    Authors: Ines Thiele, Bernhard Ø. Palsson - Nature Protocols 2010 cited by 1,880

  10. Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

    Authors: Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele - Microbiome 2019 cited by 335

  11. The contribution of gut bacterial metabolites in the human immune signaling pathway of non-communicable diseases

    Authors: Farideh Hosseinkhani, Almut Heinken, Ines Thiele, Petrus W. Lindenburg, Amy C. Harms, Thomas Hankemeier - Gut Microbes 2021 cited by 222

  12. The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

    Authors: Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German A. Preciat Gonzalez, Anna Dröfn Daníelsdóttir, Max Krecke, Diane Merten, Hulda S. Haraldsdóttir, Almut Heinken, Laurent Heirendt, Stefanía Magnúsdóttir, Dmitry A. Ravcheev, Swagatika Sahoo, Piotr Gawron, Lucia Friscioni, Beatriz Garcia Santa Cruz, Mabel Prendergast, Alberto Puente, Mariana Rodrigues, Akansha Roy, Mouss Rouquaya, Luca Wiltgen, Alise Zagare, Elisabeth John, Maren Krueger, Inna Kuperstein, Andrei Yu. Zinovyev, Reinhard Schneider, Ronan M. T. Fleming, Ines Thiele - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 424

  13. BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities

    Authors: Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta - PLoS Computational Biology, PLoS Comput. Biol. 2017 cited by 316

  14. Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer’s Disease

    Authors: Priyanka Baloni, Cory C. Funk, Jingwen Yan, James T. Yurkovich, Alexandra Kueider‐Paisley, Kwangsik Nho, Almut Heinken, Wei Jia, Siamak MahmoudianDehkordi, Gregory Louie, Andrew J. Saykin, Matthias Arnold, Gabi Kastenmüller, William J. Griffiths, Ines Thiele, Rima Kaddurah‐Daouk, Alexandra Kueider‐Paisley, Gregory Louie, P. Murali Doraiswamy, Colette Blach, Arthur Moseley, Paul M. Thompson, Siamak Mahmoudiandehkhordi, Kathleen Welsh-Balmer, Brenda L. Plassman, Andrew J. Saykin, Kwangsik Nho, Gabi Kastenmüller, Matthias Arnold, Sudeepa Bhattacharyya, Xianlin Han, Rebecca Baillie, Oliver Fiehn, Dinesh Kumar Barupal, Peter J. Meikle, Sarkis K. Mazmanian, Mitchel A. Kling, Leslie M. Shaw, John Q. Trojanowski, Jon B. Toledo, Cornelia van Duijin, Thomas Hankemier, Ines Thiele, Almut Heinken, Nathan D. Price, Cory C. Funk, Priyanka Baloni, Wei Jia, David S. Wishart, Roberta Dı́az Brinton, Rui Chang, Lindsay A. Farrer, Rhoda Au, Wendy Qiu, Peter Würtz, Lara M. Mangravite, Jan Krumsiek, John W. Newman, Bin Zhang, Herman Moreno, Rima Kaddurah‐Daouk, Nathan D. Price - Cell Reports Medicine 2020 cited by 210

  15. Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions

    Authors: Federico Baldini, Johannes Hertel, Estelle Sandt, Cyrille C. Thinnes, Lorieza Neuberger-Castillo, Lukas Pavelka, Fay Betsou, Rejko Krüger, Ines Thiele, Gloria Aguayo, Dominic Allen, Wim Ammerlann, Maike K. Aurich, Rudi Balling, Peter Banda, Katy Beaumont, Regina Becker, Daniela Berg, Sylvia Binck, Alexandre Bisdorff, Dheeraj Reddy Bobbili, Kathrin Brockmann, Jessica Calmes, Lorieza Castillo, Nico J. Diederich, Rene Dondelinger, Daniela Esteves, Jean-Yves Ferrand, Ronan M. T. Fleming, Manon Gantenbein, Thomas Gasser, Piotr Gawron, Lars Geffers, Virginie Giarmana, Enrico Glaab, Clarissa P. C. Gomes, Nikolai Goncharenko, Jérôme Graas, Mariela Graziano, Valentin Grouès, Anne Grünewald, Wei Gu, Gaël Hammot, Anne-Ma rie Hanff, Linda Hansen, Maxime Hansen, Hulda S. Haraldsdóttir, Laurent Heirendt, Sylvia Herbrink, Sascha Herzinger, Michaël Heymann, Karsten Hiller, Géraldine Hipp, Michele Hu, Laëtitia Huiart, Alexander Hundt, Nadine Jacoby, Jacek Jarosław, Yohan Jaroz, Pierre Kolber, Joachim Kutzera, Zied Landoulsi, Catherine Larue, Roseline Lentz, Inga Liepelt, Robert Liszka, Laura Longhino, Victoria Lorentz, Clare E. Mackay, Walter Maetzler, Katrin Marcus, Guilherme Fernandes Marques, Jan Martens, Conny Mathay, Piotr Matyjaszczyk, Patrick May, Françoise Meisch, Myriam Menster, Maura Minelli, Michel Mittelbronn, Brit Mollenhauer, Kathleen Mommaerts, Carlos S. Moreno, Friedrich Mühlschlegel, Romain Nati, Ulf Nehrbass, Sarah Nickels, Béatrice Nicolai, Jean-Paul Nicolay, Alberto Noronha, Wolfgang H. Oertel, Marek Ostaszewski, Sinthuja Pachchek, Claire Pauly, Magali Perquin, Dorothea Reiter, Isabel Rosety, Kirsten Rump, Venkata Satagopam, Marc Schlesser and 14 more - BMC Biology 2020 cited by 223

  16. Examining the healthy human microbiome concept

    Authors: Raphaela Joos, Katy Boucher, Aonghus Lavelle, Manimozhiyan Arumugam, Martin J. Blaser, Marcus J. Claesson, Gerard Clarke, Paul D. Cotter, Luisa De Sordi, Maria Gloria Domínguez-Bello, Bas E. Dutilh, S. Dusko Ehrlich, Tarini Shankar Ghosh, Colin Hill, Christophe Junot, Leo Lahti, Trevor D. Lawley, Tine Rask Licht, Emmanuelle Maguin, Thulani P. Makhalanyane, Julian R. Marchesi, Jelle Matthijnssens, Jeroen Raes, Jacques Ravel, Anne Salonen, Pauline D. Scanlan, Andrey N. Shkoporov, Catherine Stanton, Ines Thiele, Igor Tolstoy, Jens Walter, Bo Yang, Natalia Yutin, Alexandra Zhernakova, Hub Zwart, Francesco Asnicar, Athanasios Typas, Fay Betsou, Hervé Blottière, Peer Bork, Isabelle Boutron, Federica Carraturo, Marcus Claesson, Magali Cordaillat-Simmons, Celine Druart, Alessio Fasano, Yolanda Godoy, Dirk Haller, Zahra Hassani, Diënty H. M. J. Hazenbrink, Mads Israelsen, Anandhi Iyappan, Alexander Jarde, Stephan Kampshoff, Aleksander Krag, Aicha Kriaa, Aonghus Lavelle, Amira Metwaly, Vitalina Morozova, Federica Pinto, Nicolas Pons, Pierre-Louis Prost, Philippe Ravaud, Moez Rhimi, Julie Rodriguez, Arjun Sarati, Robert Schierwagen, Nicola Segata, Debora Serra, Jonel Trebicka, Corrado Vecchi, Patrick Veiga, Laurence Zitvogel, Lisa Derosa, Joël Doré, R. Paul Ross - Nature Reviews Microbiology 2024 cited by 139

  17. Metabolomics enables precision medicine: “A White Paper, Community Perspective”

    Authors: for “Precision Medicine and Pharmacometabolomics Task Group”-Metabolomics Society Initiative, Richard D. Beger, Warwick B. Dunn, Michael A. Schmidt, Steven S. Gross, Jennifer Kirwan, Marta Cascante, Lorraine Brennan, David S. Wishart, Matej Orešič, Thomas Hankemeier, David Broadhurst, Andrew N. Lane, Karsten Suhre, Gabi Kastenmüller, Susan J. Sumner, Ines Thiele, Oliver Fiehn, Rima Kaddurah‐Daouk - Metabolomics 2016 cited by 615

  18. A community-driven global reconstruction of human metabolism

    Authors: Ines Thiele, Neil Swainston, Ronan M. T. Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K. Aurich, Hulda S. Haraldsdóttir, Monica L. Mo, Óttar Rolfsson, Miranda D. Stobbe, Stefan Gretar Thorleifsson, Rasmus Ågren, Christian Bölling, Sergio Bordel, Arvind K. Chavali, Paul D. Dobson, Warwick B. Dunn, Lukas Endler, David Hala, Michael Hucka, Duncan Hull, Daniel Jameson, Neema Jamshidi, Jón J. Jónsson, Nick Juty, Sarah Keating, Intawat Nookaew, Nicolas Le Novère, Naglis Malys, Alexander Mazein, Jason A. Papin, Nathan D. Price, E Selkov, Martin I. Sigurðsson, Evangelos Simeonidis, Nikolaus Sonnenschein, Kieran Smallbone, Anatoly Sorokin, Hans van Beek, Dieter Weichart, Igor Goryanin, Jens Nielsen, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes, Bernhard Ø. Palsson - Nature Biotechnology 2013 cited by 1,069

  19. Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe

    Authors: Almut Heinken, M. Tanweer Khan, Giuseppe Paglia, Dmitry A. Rodionov, Hermie J. M. Harmsen, Ines Thiele - Journal of Bacteriology 2014 cited by 251

  20. Integrated Analyses of Microbiome and Longitudinal Metabolome Data Reveal Microbial-Host Interactions on Sulfur Metabolism in Parkinson’s Disease

    Authors: Johannes Hertel, Amy C. Harms, Almut Heinken, Federico Baldini, Cyrille C. Thinnes, Enrico Glaab, Daniel A. Vasco, Maik Pietzner, Isobel D. Stewart, Nicholas J. Wareham, Claudia Langenberg, Claudia Trenkwalder, Rejko Krüger, Thomas Hankemeier, Ronan M. T. Fleming, Brit Mollenhauer, Ines Thiele - Cell Reports 2019 cited by 165

  21. Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

    Authors: Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike K. Aurich, Ronan M. T. Fleming - Molecular Systems Biology 2020 cited by 225

  22. Global reconstruction of the human metabolic network based on genomic and bibliomic data

    Authors: Natalie C. Duarte, Scott A. Becker, Neema Jamshidi, Ines Thiele, Monica L. Mo, Thuy D. Vo, Rohith Srivas, Bernhard Ø. Palsson - National Academy of Sciences, Proceedings of the National Academy of Sciences 2007 cited by 1,418

  23. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

    Authors: Jan Schellenberger, Richard Que, Ronan M. T. Fleming, Ines Thiele, Jeffrey D. Orth, Adam M. Feist, Daniel C. Zielinski, Aarash Bordbar, Nathan E. Lewis, Sorena Rahmanian, Joseph Kang, Daniel R. Hyduke, Bernhard Ø. Palsson - Nature Protocols 2011 cited by 1,913

  24. Multi-Omic analyses characterize the ceramide/sphingomyelin pathway as a therapeutic target in Alzheimer’s disease

    Authors: Priyanka Baloni, Matthias Arnold, Luna Buitrago, Kwangsik Nho, Herman Moreno, Kevin Huynh, Barbara Brauner, Gregory Louie, Alexandra Kueider‐Paisley, Karsten Suhre, Andrew J. Saykin, Kim Ekroos, Peter J. Meikle, Leroy Hood, Nathan D. Price, Matthias Arnold, Colette Blach, Rima Kaddurah‐Daouk, Murali Doraiswamy, Siamak MahmoudianDehkordi, Kathleen A. Welsh‐Bohmer, Brenda L. Plassman, Jan Krumsiek, Richa Batra, Andrew J. Saykin, Jingwen Yan, Shannon L. Risacher, Peter J. Meikle, Tingting Wang, M. Arfan Ikram, Shahzad Ahmad, Thomas Hankemeier, Ivan A. Hernandez, Almut Heinken, Filippo Martinelli Boneschi, Ines Thiele, Johannes Hertel, Tim Hensen, Tim Hulshof, Lindsay A. Farrer, Rhoda Au, Wendy Wei Qiao Qiu, Thor D. Stein, Naama Karu, Kamil Borkowski, John Newman, Wei Jia, Guoxiang Xie, Jingye Wang, Runmin Wei, Dan Rader, Mitchel A. Kling, Leslie Shaw, P. Murali Doraiswamy, Cory C. Funk, A. Iván Hernández, Gabi Kastenmüller, Rebecca Baillie, Xianlin Han, Rima Kaddurah‐Daouk - Communications Biology 2022 cited by 104