Nicolas Le Novère
Active 1976–2021
- 125
- Papers
- 23,247
- Citations
- 69
- h-index
- 112
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology69.6%
- Computer Science8%
- Medicine7.8%
- Neuroscience3.7%
- Decision Sciences3.1%
- Agricultural and Biological Sciences2%
- Other5.8%
Topics
- Gene Regulatory Network Analysis8.9%
- Bioinformatics and Genomic Networks8.2%
- Microbial Metabolic Engineering and Bioproduction7.7%
- Nicotinic Acetylcholine Receptors Study5.2%
- Biomedical Text Mining and Ontologies3.7%
- Receptor Mechanisms and Signaling3.4%
- Other62.9%
Coauthors
- Michael Hucka27
- Camille Laibe23
- Jean‐Pierre Changeux22
- Dagmar Waltemath19
- Nicolas Rodriguez18
- Chris J. Myers13
- Herbert M. Sauro12
- David P. Nickerson11
- Frank T. Bergmann11
- Henning Hermjakob11
- Andreas Dräger10
- Vijayalakshmi Chelliah10
- Augustin Luna9
- Falk Schreiber9
- Martin Golebiewski8
- Nick S. Juty8
- Sven Sahle8
- Brett G. Olivier7
- Lu Li7
- Michèle Zoli7
- Stefan Hoops7
- Alice Villéger6
- Emek Demir6
- Huaiyu Mi6
All papers
- The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
Authors: Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang - Bioinformatics, Bioinform. 2003 cited by 3,150
- A community-driven global reconstruction of human metabolism
Authors: Ines Thiele, Neil Swainston, Ronan M. T. Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K. Aurich, Hulda S. Haraldsdóttir, Monica L. Mo, Óttar Rolfsson, Miranda D. Stobbe, Stefan Gretar Thorleifsson, Rasmus Ågren, Christian Bölling, Sergio Bordel, Arvind K. Chavali, Paul D. Dobson, Warwick B. Dunn, Lukas Endler, David Hala, Michael Hucka, Duncan Hull, Daniel Jameson, Neema Jamshidi, Jón J. Jónsson, Nick Juty, Sarah Keating, Intawat Nookaew, Nicolas Le Novère, Naglis Malys, Alexander Mazein, Jason A. Papin, Nathan D. Price, E Selkov, Martin I. Sigurðsson, Evangelos Simeonidis, Nikolaus Sonnenschein, Kieran Smallbone, Anatoly Sorokin, Hans van Beek, Dieter Weichart, Igor Goryanin, Jens Nielsen, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes, Bernhard Ø. Palsson - Nature Biotechnology 2013 cited by 1,069
- The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
Authors: Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang - Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics, J. Integr. Bioinform. 2019 cited by 275
- The Systems Biology Graphical Notation
Authors: Nicolas Le Novère, Michael Hucka, Huaiyu Mi, Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala Wimalaratne, Frank T Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villéger, Sarah E Boyd, Laurence Calzone, Mélanie Courtot, Uğur Doğrusöz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert M. Sauro, Jacky L. Snoep, Kurt W. Kohn, Hiroaki Kitano - Nature Biotechnology 2009 cited by 947
- Quantitative and logic modelling of molecular and gene networks
Authors: Nicolas Le Novère - Nature Reviews Genetics 2015 cited by 451
- Epicardial cells derived from human embryonic stem cells augment cardiomyocyte-driven heart regeneration
Authors: Johannes Bargehr, Lay Ping Ong, Maria Colzani, Hongorzul Davaapil, Peter Hofsteen, Shiv Bhandari, Laure Gambardella, Nicolas Le Novère, Dharini Iyer, Fotios Sampaziotis, Florian Weinberger, Alessandro Bertero, Andrea Leonard, William G. Bernard, Amy Martinson, Nichola Figg, Michael Regnier, Martin R. Bennett, Charles E. Murry, Sanjay Sinha - Nature Biotechnology 2019 cited by 208
- Cooperative Binding
Authors: Melanie I. Stefan, Nicolas Le Novère - PLoS Computational Biology, PLoS Comput. Biol. 2013 cited by 233
- The BioPAX community standard for pathway data sharing
Authors: Emek Demir, Michael P. Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Västrik, Guanming Wu, Peter D’Eustachio, Carl F. Schaefer, Joanne Luciano, Frank Schacherer, Irma Martínez‐Flores, Zhenjun Hu, Verónica Jiménez‐Jacinto, Joshi-Tope Geeta, Kumaran Kandasamy, Alejandra López-Fuentes, Huaiyu Mi, Elgar Pichler, Igor Rodchenkov, Andrea Splendiani, Sasha Tkachev, Jeremy Zucker, Gopal Gopinath, Harsha Rajasimha, Ranjani Ramakrishnan, Imran Shah, Mustafa Syed, Nadia Anwar, Özgün Babur, Michael L. Blinov, Erik Brauner, Dan Corwin, Sylva L. Donaldson, Frank Gibbons, Robert N. Goldberg, Peter Hornbeck, Augustin Luna, Peter Murray‐Rust, Eric Neumann, Oliver Ruebenacker, Matthias Samwald, Martijn van Iersel, Sarala Wimalaratne, K.W. Allen, Burk Braun, Michelle Whirl‐Carrillo, Kei-Hoi Cheung, Kam D Dahlquist, Andrew Finney, Marc Gillespie, Elizabeth M. Glass, Li Gong, Robin Haw, Michael Honig, Olivier Hubaut, David W. Kane, Shiva Krupa, Martina Kutmon, Julie Mosty Leonard, Debbie Marks, David Merberg, Victoria Petri, Alexander R. Pico, Dean Ravenscroft, Liya Ren, Nigam H. Shah, Margot Sunshine, Rebecca Tang, Ryan Whaley, Stan Letovksy, Kenneth H. Buetow, Andrey Rzhetsky, Vincent Schächter, Bruno S Sobral, Uğur Doğrusöz, Shannon K. McWeeney, Mirit I. Aladjem, Ewan Birney, Julio Collado‐Vides, Susumu Goto, Michael Hucka, Nicolas Le Novère, Natalia Maltsev, Akhilesh Pandey, Paul D. Thomas, Edgar Wingender, Peter D. Karp, Chris Sander, Gary D. Bader - Nature Biotechnology 2010 cited by 756
- Minimum information requested in the annotation of biochemical models (MIRIAM)
Authors: Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne, Julio Collado‐Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul MF Nielsen, Herbert M. Sauro, Bruce E. Shapiro, Jacky L. Snoep, H. D. Spence, Barry L. Wanner - Nature Biotechnology 2005 cited by 635
- The EBI RDF platform: linked open data for the life sciences
Authors: Simon Jupp, James Malone, Jerven Bolleman, Marco Brandizi, Mark Davies, Leyla Jael Castro, Anna Gaulton, Sébastien Géhant, Camille Laibe, Nicole Redaschi, Sarala Wimalaratne, María Martin, Nicolas Le Novère, Helen Parkinson, Ewan Birney, Andy Jenkinson - Bioinformatics, Bioinform. 2014 cited by 249
- Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language
Authors: Dagmar Waltemath, Richard R. Adams, Frank T. Bergmann, Michael Hucka, Fedor A. Kolpakov, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Sven Sahle, Jacky L. Snoep, Nicolas Le Novère - BMC Systems Biology, BMC Syst. Biol. 2011 cited by 272
- COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
Authors: Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère - BMC Bioinformatics, BMC Bioinform. 2014 cited by 186
- SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Authors: Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar - BMC Systems Biology, BMC Syst. Biol. 2013 cited by 177
- Path2Models: large-scale generation of computational models from biochemical pathway maps
Authors: Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère - BMC Systems Biology, BMC Syst. Biol. 2013 cited by 181
- Minimum Information About a Simulation Experiment (MIASE)
Authors: Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère - PLoS Computational Biology, PLoS Comput. Biol. 2011 cited by 180
- BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
Authors: Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka - Nucleic Acids Research, Nucleic Acids Res. 2005 cited by 789
- Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
Authors: Chris Taylor, Dawn Field, Susanna‐Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre‐Alain Binz, Molly A. Bogue, Tim Booth, Alvis Brāzma, Ryan R. Brinkman, Adam M. Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, F. Gibson, Tanya Gray, Graeme R. Grimes, John M. Hancock, Nigel Hardy, Henning Hermjakob, Randall K. Julian, Matthew D. Kane, Carsten Kettner, Christopher R. Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novère, Jim Leebens‐Mack, Suzanna Lewis, Phillip Lord, Ann‐Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca‐Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo‐López, Richard H. Scheuermann, Daniel Schober, Barry Smith, Jason Snape, Christian J. Stoeckert, Keith F. Tipton, Peter Sterk, Andreas Untergasser, Jo Vandesompele, Stefan Wiemann - Nature Biotechnology 2008 cited by 562
- Finding Our Way through Phenotypes
Authors: Andrew Deans, Suzanna Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel Cooper, Mélanie Courtot, Sándor Csősz, Hong Cui, Wasila Dahdul, Sandip Das, T. Alexander Dececchi, Agnès Dettaı̈, Rui Diogo, Robert E. Druzinsky, Michel Dumontier, Nico M. Franz, Frank Friedrich, George V. Gkoutos, Melissa Haendel, Luke J. Harmon, Terry F. Hayamizu, Yongqun He, Heather M. Hines, Nizar Ibrahim, Laura M. Jackson, Pankaj Jaiswal, Christina James‐Zorn, Sebastian Köhler, Guillaume Lecointre, Hilmar Lapp, Carolyn J. Lawrence, Nicolas Le Novère, John G. Lundberg, James Macklin, Austin Mast, Peter Midford, István Mikó, Chris Mungall, Anika Oellrich, David Osumi-Sutherland, Helen Parkinson, Martín J. Ramiréz, Stefan Richter, Peter N. Robinson, Alan Ruttenberg, Katja Schulz, Erik Segerdell, Katja C. Seltmann, Michael J. Sharkey, Aaron D. Smith, Barry Smith, Chelsea D. Specht, R. Burke Squires, Robert Thacker, Anne Thessen, José Fernández-Triana, Mauno Vihinen, Peter D. Vize, Lars Vogt, Christine E. Wall, Ramona Walls, Westerfeld Monte, Robert A. Wharton, Christian S. Wirkner, James B. Woolley, Matthew Yoder, Aaron M. Zorn, Paula Mabee - PLoS Biology 2015 cited by 222
- PTEN Regulates PI(3,4)P2 Signaling Downstream of Class I PI3K
Authors: Mouhannad Malek, Anna Kielkowska, Tamara Chessa, Karen E. Anderson, David Barneda, Pınar Pir, Hiroki Nakanishi, Satoshi Eguchi, Atsushi Koizumi, Junko Sasaki, Véronique Juvin, Vladimir Yu Kiselev, Izabella Niewczas, Alexander Gray, Alexandre Valayer, Dominik Spensberger, Marine Imbert, Sérgio Luís Felisbino, Tomonori Habuchi, Sören Beinke, Sabina Cosulich, Nicolas Le Novère, Takehiko Sasaki, Jonathan Clark, Phillip T. Hawkins, Len Stephens - Molecular Cell 2017 cited by 184
- Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
Authors: Julie A. McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal Fellows, Alejandra González-Beltrán, Philipp Gormanns, Jeffrey S. Grethe, Janna Hastings, Jean-Karim Hèriché, Henning Hermjakob, Jon Ison, Rafael C. Jiménez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, María Martin, Johanna McEntyre, Chris Morris, Juha Muilu, Wolfgang G. Müller, Philippe Rocca‐Serra, Susanna‐Assunta Sansone, Murat Sariyar, Jacky L. Snoep, Stian Soiland‐Reyes, Natalie Stanford, Neil Swainston, Nicole Washington, Alan Williams, Sarala Wimalaratne, Lilly Winfree, Katherine Wolstencroft, Carole Goble, Chris Mungall, Melissa Haendel, Helen Parkinson - PLoS Biology 2017 cited by 148
- Nicotinic Receptors at the Amino Acid Level
Authors: Pierre‐Jean Corringer, Nicolas Le Novère, Jean‐Pierre Changeux - The Annual Review of Pharmacology and Toxicology 2000 cited by 813
- A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
Authors: Markus J. Herrgård, Neil Swainston, Paul D. Dobson, Warwick B. Dunn, Kazım Yalçın Arğa, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana Paula Oliveira, Dina Petranović, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasié, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betül Kürdar, Merja Penttilä, Edda Klipp, Bernhard Ø. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell - Nature Biotechnology 2008 cited by 607
- Controlled vocabularies and semantics in systems biology
Authors: Mélanie Courtot, Nick Juty, Christian Knüpfer, Dagmar Waltemath, Anna Zhukova, Andreas Dräger, Michel Dumontier, Andrew Finney, Martin Golebiewski, Janna Hastings, Stefan Hoops, Sarah Keating, Douglas B. Kell, Samuel Kerrien, James R. Lawson, Allyson Lister, James Lu, Rainer Machné, Pedro Mendes, Matthew Pocock, Nicolás Rodríguez, Alice Villéger, Darren J. Wilkinson, Sarala Wimalaratne, Camille Laibe, Michael Hucka, Nicolas Le Novère - Molecular Systems Biology 2011 cited by 331
- BioModels: ten-year anniversary
Authors: Vijayalakshmi Chelliah, Nick Juty, Ishan Ajmera, Ali Raza, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah Keating, Vincent Knight-Schrijver, Audald Lloret‐Villas, Kedar Nath Natarajan, Jean‐Baptiste Pettit, Nicolás Rodríguez, Michaël Schubert, Sarala Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère, Camille Laibe - Nucleic Acids Research, Nucleic Acids Res. 2014 cited by 312
