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Thomas Rattei

Active 2004–2025

109
Papers
32,582
Citations
65
h-index
100
i10-index

Citations

Citations per year for Thomas Rattei1992: 3 citations1993: 1 citations1995: 1 citations2000: 1 citations2001: 1 citations2002: 1 citations2004: 15 citations2005: 27 citations2006: 54 citations2007: 86 citations2008: 86 citations2009: 93 citations2010: 114 citations2011: 176 citations2012: 191 citations2013: 243 citations2014: 216 citations2015: 238 citations2016: 247 citations2017: 301 citations2018: 282 citations2019: 889 citations2020: 1,023 citations2021: 1,123 citations2022: 1,035 citations2023: 749 citations2024: 1,335 citations2025: 611 citations2026: 25 citations1994: no citations, so this year is not shown1996–1999: no citations, so these years are not shown2003: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,819 citing papers, 18.1% of this breakdownChina: 2,092 citing papers, 13.4% of this breakdownGermany: 1,304 citing papers, 8.4% of this breakdownUnited Kingdom: 840 citing papers, 5.4% of this breakdownFrance: 628 citing papers, 4% of this breakdownAustralia: 552 citing papers, 3.5% of this breakdownCanada: 487 citing papers, 3.1% of this breakdownNetherlands: 465 citing papers, 3% of this breakdownSpain: 461 citing papers, 3% of this breakdownAustria: 419 citing papers, 2.7% of this breakdownItaly: 393 citing papers, 2.5% of this breakdownDenmark: 380 citing papers, 2.4% of this breakdown
0%18.1%Other 30.5%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology48.4%
  • Environmental Science23.8%
  • Agricultural and Biological Sciences9.8%
  • Medicine7%
  • Immunology and Microbiology3.8%
  • Earth and Planetary Sciences1.9%
  • Other5.3%

Topics

  • Genomics and Phylogenetic Studies10.1%
  • Microbial Community Ecology and Physiology7.3%
  • Gut microbiota and health6.9%
  • Bacteriophages and microbial interactions3.2%
  • Bioinformatics and Genomic Networks2.4%
  • Probiotics and Fermented Foods1.9%
  • Other68.2%

Coauthors

All papers

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  1. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

    Authors: Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia K. Forslund, Helen Cook, Daniel R. Mende, Ivica Letunic, Thomas Rattei, Lars Juhl Jensen, Christian von Mering, Peer Bork - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 5,252

  2. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Authors: Robert M. Bowers, Nikos C. Kyrpides, Ramūnas Stepanauskas, Miranda Harmon‐Smith, Devin F. R. Doud, T. B. K. Reddy, Frederik Schulz, Jessica K. Jarett, Adam R. Rivers, Emiley A. Eloe‐Fadrosh, Susannah G. Tringe, Natalia Ivanova, Alex Copeland, Alicia Clum, Eric D. Becraft, Rex R. Malmstrom, Bruce W. Birren, Mircea Podar, Peer Bork, George M. Weinstock, George M Garrity, Jeremy A. Dodsworth, Shibu Yooseph, Granger Sutton, Frank Oliver Glöckner, Jack A. Gilbert, William Nelson, Steven Hallam, Sean P. Jungbluth, Thijs J. G. Ettema, Scott Tighe, Konstantinos T. Konstantinidis, Wen‐Tso Liu, Brett J. Baker, Thomas Rattei, Jonathan A. Eisen, Brian P. Hedlund, Katherine D. McMahon, Noah Fierer, Rob Knight, ROBERT FINN, Guy Cochrane, Ilene Karsch‐Mizrachi, Gene W Tyson, Christian Rinke, Alla Lapidus, Folker Meyer, Pelin Yilmaz, Donovan H. Parks, A. Murat Eren, Lynn M. Schriml, Jillian F. Banfield, Philip Hugenholtz, Tanja Woyke - Nature Biotechnology 2017 cited by 2,712

  3. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

    Authors: Katherine M. Kennedy, Marcus C. de Goffau, María Elisa Pérez-Muñoz, Marie‐Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D. Bushman, Joël Doré, Willem M. de Vos, Ashlee M. Earl, Jonathan A. Eisen, Michal A. Elovitz, Stephanie C. Ganal‐Vonarburg, Michael G. Gänzle, Wendy S. Garrett, Lindsay J. Hall, Mathias W. Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J. Macpherson, Ruth C. Massey, Alice C. McHardy, Omry Koren, Trevor D. Lawley, Ruth E. Ley, Liam O’Mahony, Paul W. O’Toole, Eric G. Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M. Sloboda, Gordon C. S. Smith, Harry Sokol, Tim D. Spector, Michael G. Surette, Gerald W. Tannock, Alan W. Walker, Moran Yassour, Jens Walter - Nature 2023 cited by 362

  4. Minimum Information about an Uncultivated Virus Genome (MIUViG)

    Authors: Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovìč, Jens H. Kuhn, Rob Lavigne, J. Rodney Brister, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Guy Cochrane, Rebecca A. Daly, Christelle Desnues, Melissa B. Duhaime, Joanne Emerson, François Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Natalia Ivanova, Jessica Labonté, Kyung-Bum Lee, Rex R. Malmstrom, Manuel Martínez‐García, Ilene Karsch‐Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie‐Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodríguez‐Valera, Karyna Rosario, Lynn M. Schriml, Frederik Schulz, Grieg F. Steward, Matthew B. Sullivan, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Rebecca Vega Thurber, Nicole S. Webster, Katrine L Whiteson, Steven W. Wilhelm, K. Eric Wommack, Tanja Woyke, Kelly Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh - Nature Biotechnology 2018 cited by 790

  5. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

    Authors: Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 2,321

  6. The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

    Authors: Adrian Tett, Kun D. Huang, Francesco Asnicar, Hannah Fehlner-Peach, Edoardo Pasolli, Nicolai Karcher, Federica Armanini, Paolo Manghi, Kevin S. Bonham, Moreno Zolfo, Francesca De Filippis, Cara Magnabosco, Richard Bonneau, John Lusingu, John Amuasi, Karl J. Reinhard, Thomas Rattei, Fredrik Boulund, Lars Engstrand, Albert Zink, María Carmen Collado, Dan R. Littman, Daniel Eibach, Danilo Ercolini, Omar Rota‐Stabelli, Curtis Huttenhower, Frank Maixner, Nicola Segata - Cell Host & Microbe 2019 cited by 502

  7. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

    Authors: Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Rubén Garrido‐Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D. Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z. DeMaere, Rayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika Balvočiūtė, Lars Hestbjerg Hansen, Søren J. Sørensen, Burton Kuan Hui Chia, Bertrand Denis, Jeff Froula, Zhong Wang, Robert W. Egan, Dongwan Kang, Jeffrey Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu‐Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael D. Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans‐Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze‐Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy - Nature Methods 2017 cited by 948

  8. eggNOG 6.0: enabling comparative genomics across 12 535 organisms

    Authors: Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, Carlos P. Cantalapiedra, Joaquín Giner-Lamia, Daniel R. Mende, Rebecca Kirsch, Thomas Rattei, Ivica Letunic, Lars Juhl Jensen, Peer Bork, Christian von Mering, Jaime Huerta-Cepas - Nucleic Acids Research, Nucleic Acids Res. 2022 cited by 338

  9. Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks

    Authors: Nadezhda T. Doncheva, John H. Morris, Henrietta Holze, Rebecca Kirsch, Katerina Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen - Journal of Proteome Research 2022 cited by 225

  10. Complete nitrification by Nitrospira bacteria

    Authors: Holger Daims, Е. В. Лебедева, Petra Pjevac, Ping Han, Craig W. Herbold, Mads Albertsen, Nico Jehmlich, Márton Palatinszky, Julia Vierheilig, А. Г. Булаев, Rasmus Hansen Kirkegaard, Martin von Bergen�, Thomas Rattei, Bernd Bendinger, Per Halkjær Nielsen, Michael Wagner - Nature 2015 cited by 2,777

  11. eggNOG v4.0: nested orthology inference across 3686 organisms

    Authors: Sean Powell, Kristoffer Forslund, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Jaime Huerta-Cepas, Toni Gabaldón, Thomas Rattei, Christopher J. Creevey, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 691

  12. Gepard: a rapid and sensitive tool for creating dotplots on genome scale

    Authors: Jan Krumsiek, Roland Arnold, Thomas Rattei - Bioinformatics, Bioinform. 2007 cited by 773

  13. Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets

    Authors: Alesia Walker, Barbara Pfitzner, Mourad Harir, Monika Schaubeck, Jelena Ćalasan, Silke S. Heinzmann, Dmitrij Turaev, Thomas Rattei, David Endesfelder, Wolfgang zu Castell, Dirk Haller, Michael Schmid, Anton Hartmann, Philippe Schmitt‐Kopplin - Scientific Reports 2017 cited by 132

  14. Man-made microbial resistances in built environments

    Authors: Alexander Mahnert, Christine Moissl‐Eichinger, Markus Zojer, David Bogumil, Itzhak Mizrahi, Thomas Rattei, José Luis Martínez, Gabriele Berg - Nature Communications 2019 cited by 215

  15. The dynamic genome of Hydra

    Authors: Jarrod Chapman, Ewen F. Kirkness, Oleg Simakov, Steven E. Hampson, Therese Mitros, Thomas Weinmaier, Thomas Rattei, Prakash G. Balasubramanian, Jon Borman, Dana Busam, Kathryn Disbennett, Cynthia Pfannkoch, Nadezhda Sumin, Granger G. Sutton, Lakshmi Viswanathan, Brian P. Walenz, David Goodstein, Uffe Hellsten, Takeshi Kawashima, Simon Prochnik, Nicholas H. Putnam, Shengqiang Shu, Bruce Blumberg, Catherine E. Dana, Lydia Gee, Dennis Kibler, Lee Law, Dirk Lindgens, Daniel E. Martínez, Jisong Peng, Philip A. Wigge, Bianca Bertulat, Corina Guder, Yukio Nakamura, Suat Özbek, Hiroshi Watanabe, Konstantin Khalturin, Georg Hemmrich, André Franke, René Augustin, Sebastian Fraune, Eisuke Hayakawa, Shiho Hayakawa, Mamiko Hirose, Jung Shan Hwang, Kazuho Ikeo, Chiemi Nishimiya‐Fujisawa, Atshushi Ogura, Toshio Takahashi, Patrick R. H. Steinmetz, Xiaoming Zhang, Roland Aufschnaiter, Marie-Kristin Eder, Anne-Kathrin Gorny, Willi Salvenmoser, Alysha M. Heimberg, Benjamin M. Wheeler, Kevin J. Peterson, Angelika Böttger, Patrick Tischler, Alexander Wolf, Takashi Gojobori, Karin Remington, Robert L. Strausberg, J. Craig Venter, Ulrich Technau, Bert Hobmayer, Thomas C. G. Bosch, Thomas W. Holstein, Toshitaka Fujisawa, Hans R. Bode, Charles N. David, Daniel S. Rokhsar, Robert E. Steele - Nature 2010 cited by 826

  16. Deciphering the evolution and metabolism of an anammox bacterium from a community genome

    Authors: Marc Strous, Éric Pelletier, Sophie Mangenot, Thomas Rattei, Angelika Lehner, Michael W. Taylor, Matthias Horn, Holger Daims, Delphine Bartol–Mavel, Patrick Wincker, Valérie Barbe, Núria Fonknechten, David Vallenet, Béatrice Segurens, Chantal Schenowitz-Truong, Claudine Médigue, Astrid Collingro, ‎Berend Snel, Bas E. Dutilh, Huub J. M. Op den Camp, Chris van der Drift, Irina Cirpus, Katinka T. van de Pas-Schoonen, Harry R. Harhangi, Laura van Niftrik, Markus Schmid, Jan T. Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A. Huynen, Hans‐Werner Mewes, Jean Weissenbach, Mike S. M. Jetten, Michael Wagner, Denis Le Paslier - Nature 2006 cited by 1,375

  17. Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota

    Authors: Alexander Loy, Carina Pfann, Michaela Steinberger, Buck Hanson, Simone Herp, Sandrine Brugiroux, João Carlos Gomes‐Neto, Mark V. Boekschoten, Clarissa Schwab, Tim Urich, Amanda E. Ramer‐Tait, Thomas Rattei, Bärbel Stecher, David Berry - mSystems 2017 cited by 244

  18. Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

    Authors: Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig W. Herbold, Thomas Rattei, Dagmar Woebken - Environmental Microbiology 2018 cited by 365

  19. A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

    Authors: Sebastian Lücker, Michael Wagner, Frank Maixner, Éric Pelletier, Hanna Koch, Benoît Vacherie, Thomas Rattei, Jaap S. Sinninghe Damsté, Eva Spieck, Denis Le Paslier, Holger Daims - National Academy of Sciences, Proceedings of the National Academy of Sciences 2010 cited by 808

  20. Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut

    Authors: Buck Hanson, K. Dimitri Kits, Jessica Löffler, Anna Burrichter, Alexander W. Fiedler, Karin Denger, Benjamin Frommeyer, Craig W. Herbold, Thomas Rattei, Nicolai Karcher, Nicola Segata, David Schleheck, Alexander Loy - The ISME Journal 2021 cited by 71

  21. Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

    Authors: Frank Maixner, Mohamed S. Sarhan, Kun D. Huang, Adrian Tett, Alexander Schoenafinger, Stefania Zingale, Aitor Blanco‐Míguez, Paolo Manghi, Jan Cemper‐Kiesslich, Wilfried Rosendahl, Ulrike Kusebauch, Seamus R. Morrone, Michael R. Hoopmann, Omar Rota‐Stabelli, Thomas Rattei, Robert L. Moritz, Klaus Oeggl, Nicola Segata, Albert Zink, Hans Reschreiter, Kerstin Kowarik - Current Biology 2021 cited by 56

  22. VOGDB—Database of Virus Orthologous Groups

    Authors: Lovro Trgovec-Greif, Hans-Jörg Hellinger, Jean Mainguy, Alexander Pfundner, Dmitrij Frishman, Michael Kiening, Nicole S. Webster, Patrick W. Laffy, Michael Feichtinger, Thomas Rattei - Viruses 2024 cited by 56

  23. Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network

    Authors: Thibault G. Sana, Christoph Baumann, Andreas Merdes, Chantal Soscia, Thomas Rattei, Abderrahman Hachani, C. Hal Jones, Keiryn L. Bennett, Alain Filloux, Giulio Superti‐Furga, Romé Voulhoux, Sophie Bleves - mBio 2015 cited by 178

  24. eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

    Authors: Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 617