Philipp Kapranov
Active 2002–2025
- 60
- Papers
- 32,140
- Citations
- 46
- h-index
- 55
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology78.8%
- Medicine8.4%
- Immunology and Microbiology6.6%
- Agricultural and Biological Sciences2.8%
- Neuroscience1.3%
- Computer Science0.5%
- Other1.6%
Topics
- Cancer-related molecular mechanisms research12.9%
- RNA modifications and cancer10%
- RNA Research and Splicing8.6%
- Genomics and Chromatin Dynamics4.9%
- RNA and protein synthesis mechanisms4.6%
- Circular RNAs in diseases3.9%
- Other55.1%
Coauthors
- T Gingeras21
- Huifen Cao10
- Georges St. Laurent9
- Jörg Drenkow9
- Ye Cai8
- Claes Wahlestedt7
- Fan Gao7
- Ian Bell7
- Dongyang Xu6
- Jill Cheng6
- Patrice M. Milos6
- Srinka Ghosh6
- Antonio Piccolboni5
- Gregg Helt5
- Stefan Bekiranov5
- Sujit Dike5
- Sylvain Foissac5
- Dmitry Shtokalo4
- Fang Wang4
- Fei Qi4
- Hari Tammana4
- Julien Lagarde4
- Lu Tang4
- Michael Tackett4
All papers
- Long non-coding RNAs: definitions, functions, challenges and recommendations
Authors: John S. Mattick, Paulo Amaral, Piero Carninci, Susan Carpenter, Howard Y. Chang, Ling‐Ling Chen, Runsheng Chen, Caroline Dean, Marcel E. Dinger, Katherine A. Fitzgerald, T Gingeras, Mitchell Guttman, Tetsuro Hirose, Maite Huarte, Rory Johnson, Chandrasekhar Kanduri, Philipp Kapranov, Jeanne B. Lawrence, Jeannie T. Lee, Joshua T. Mendell, Tim R. Mercer, Kathryn J. Moore, Shinichi Nakagawa, John L. Rinn, David L. Spector, Igor Ulitsky, Yue Wan, Jeremy E. Wilusz, Mian Wu - Nature Reviews Molecular Cell Biology 2023 cited by 2,240
- Landscape of transcription in human cells
Authors: Sarah Djebali, Carrie Davis, Angelika Merkel, Alexander Dobin, Timo Lassmann, A Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger, Chenghai Xue, Georgi K. Marinov, Jainab Khatun, Brian A. Williams, Chris Zaleski, Joel Rozowsky, Maik Röder, Felix Kokocinski, Rehab Abdelhamid, Tyler Alioto, Igor Antoshechkin, Michael T. Baer, Nadav Bar, Philippe Batut, Kimberly Bell, Ian Bell, Sudipto K. Chakrabortty, Xian Chen, Jacqueline Chrast, João Curado, Thomas Derrien, Jörg Drenkow, Erica Dumais, Jacqueline Dumais, Radha Duttagupta, Emilie Falconnet, Meagan Fastuca, Kata Fejes-Toth, Pedro G. Ferreira, Sylvain Foissac, Melissa J. Fullwood, Hui Gao, David González, Assaf Gordon, Harsha P. Gunawardena, Cédric Howald, Sonali Jha, Rory Johnson, Philipp Kapranov, Brandon King, Colin Kingswood, Oscar Junhong Luo, Eddie Park, Kimberly Persaud, Jonathan Preall, Paolo Ribeca, Brian A. Risk, Daniel Robyr, Michael Sammeth, Lorian Schaffer, Lei-Hoon See, Atif Shahab, Jørgen Skancke, Ana Maria Suzuki, Hazuki Takahashi, Hagen Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, John A. Wrobel, Yanbao Yu, Xiaoan Ruan, Yoshihide Hayashizaki, Jennifer Harrow, Mark Gerstein, Tim Hubbard, Alexandre Reymond, Stylianos E. Antonarakis, Gregory J. Hannon, Morgan C. Giddings, Yijun Ruan, B Wold, Piero Carninci, Roderic Guigó, T Gingeras - Nature 2012 cited by 5,413
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Authors: Fabio Pardi, Damian Keefe, Benedict Paten, Tim Massingham, Simon Whelan, Abel Ureta‐Vidal, Ari Löytynoja, Paul Flicek, Ewan Birney, Simon Whelan, Ewan Birney, Nick Goldman, Robert E. Thurman, Fidencio Neri, Shane Neph, Kirsten Lee, Jeff Goldy, Anthony Shafer, Michael O. Dorschner, Molly Weaver, Richard Sandstrom, J Stamatoyannopoulos, Andrew Haydock, Richard Sandstrom, William Stafford Noble, J Stamatoyannopoulos, Nathan Day, Richard Humbert, J Stamatoyannopoulos, Peter J. Sabo, Anindya Dutta, Ankit Malhotra, Neerja Karnani, Christopher M. Taylor, Roderic Guigó, Anindya Dutta, Patrick J. Boyle, Man Yu, Tyler Alioto, Josep F. Abril, Roderic Guigó, Eduardo Eyras, Núria López-Bigas, Philipp Kapranov, Josep F. Abril, Robert Castelo, Julien Lagarde, Jorg Drenkow, Eduardo Eyras, Srinka Ghosh, Evelyn J. Cheung, David A. Nix, Philipp Kapranov, Madhavan Ganesh, Ian Bell, Jill Cheng, Sylvain Foissac, Eric D. Green, Hari Tammana, Jörg Drenkow, T Gingeras, Valerie V.B. Maduro, Sujit Dike, T Gingeras, Yutao Fu, Ulaş Karaöz, Francis S. Collins, Valerie V. Maduro, Elliott H. Margulies, Eric D. Green, Hennady P. Shulha, Elliott H. Margulies, Jacquelyn R. Idol, Michael Snyder, Anason Halees, Xiaoling Zhang, Mousheng Xu, Ulaş Karaöz, Alexander E. Urban, Yutao Fu, Joel Rozowsky, Hennady P. Shulha, Yong Yu, Jaafar N. Haidar, Mark Gerstein, Jane M. Lin, Ghia Euskirchen, Jiaqian Wu, Ugrappa Nagalakshmi, M Snyder, Stephen E. Hartman, Peter R. Kraus, Pawandeep Dhami, Alexander E. Urban, Deyou Zheng, Joel Rozowsky, David Vetrie, Zhengdong D. Zhang, Ian Dunham, Michael Seringhaus and 212 more - Nature 2007 cited by 5,283
- RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
Authors: Philipp Kapranov, Jill Cheng, Sujit Dike, David A. Nix, Radharani Duttagupta, Aarron Willingham, Peter F. Stadler, Jana Hertel, Jörg Hackermüller, Ivo L. Hofacker, Ian Bell, Evelyn J. Cheung, Jörg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, T Gingeras - Science 2007 cited by 2,593
- The Landscape of long noncoding RNA classification
Authors: Georges St. Laurent, Claes Wahlestedt, Philipp Kapranov - Trends in Genetics 2015 cited by 1,210
- CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells
Authors: Weihong Liu, Amy Putnam, Zhou Xu-yu, Gregory L. Szot, Michael R. Lee, Shirley Zhu, Peter A. Gottlieb, Philipp Kapranov, T Gingeras, Barbara Fazekas de St Groth, Carol Clayberger, David M. Soper, Steven F. Ziegler, Jeffrey A. Bluestone - The Journal of Experimental Medicine 2006 cited by 2,584
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Authors: Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Pouya Kheradpour, Nicolas Nègre, Matthew L. Eaton, Jane M. Landolin, Christopher A. Bristow, Lijia Ma, Michael F. Lin, Stefan Washietl, Bradley I. Arshinoff, Ferhat Ay, Patrick Meyer, Nicolas Robine, Nicole Washington, Luisa Di Stefano, Eugène Berezikov, Christopher D. Brown, Rogerio Candeias, Joseph W. Carlson, Adrian R. Carr, Irwin Jungreis, Daniel Marbach, Rachel Sealfon, Michael Tolstorukov, Sebastian Will, Artyom A. Alekseyenko, Carlo G. Artieri, Benjamin W. Booth, Angela N. Brooks, Qi Dai, Carrie Davis, Michael O. Duff, Xin Feng, Andrey A. Gorchakov, Tingting Gu, Jorja G. Henikoff, Philipp Kapranov, Renhua Li, Heather K. MacAlpine, John H. Malone, Aki Minoda, Jared T. Nordman, Katsutomo Okamura, Marc D. Perry, Sara Powell, Nicole C. Riddle, A. Sakai, Anastasia Samsonova, Jeremy E. Sandler, Yuri B. Schwartz, Noa Sher, Rebecca Spokony, David Sturgill, Marijke van Baren, Kenneth H. Wan, Li Yang, Charles Yu, Elise A. Feingold, Peter J. Good, Mark S. Guyer, Rebecca F. Lowdon, Kami Ahmad, Justen Andrews, Bonnie Berger, Steven E. Brenner, Michael R. Brent, Lucy Cherbas, Sarah C. R. Elgin, T Gingeras, Robert L. Grossman, Roger A. Hoskins, Thomas C. Kaufman, W. James Kent, Mitzi I. Kuroda, Terry L. Orr‐Weaver, Norbert Perrimon, Vincenzo Pirrotta, James W. Posakony, Bing Ren, Steven Russell, Peter Cherbas, Brenton R. Graveley, Suzanna Lewis, Gos Micklem, Brian Oliver, Peter J. Park, S Celniker, Steven Henikoff, Gary H. Karpen, Eric C. Lai, David M. MacAlpine, Lincoln Stein, Kevin P. White, Manolis Kellis, Daniel Estrada Acevedo, Richard P. Auburn, Galt P Barber, Hugo J. Bellen and 72 more - Science 2010 cited by 1,310
- Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
Authors: William A. Pastor, Utz Johann Pape, Yun Huang, Hope R. Henderson, Ryan Lister, Myunggon Ko, Erin M. McLoughlin, Yevgeny Brudno, Sahasransu Mahapatra, Philipp Kapranov, Mamta Tahiliani, George Q. Daley, X. Shirley Liu, Joseph R. Ecker, Patrice M. Milos, Suneet Agarwal, Anjana Rao - Nature 2011 cited by 810
- A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
Authors: Xueqing Zhang, Zheng Lian, Carolyn Padden, Mark Gerstein, Joel Rozowsky, M Snyder, T Gingeras, Philipp Kapranov, Sherman M. Weissman, Peter E. Newburger - Blood 2009 cited by 402
- The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation
Authors: Chiara Pastori, Philipp Kapranov, Clara Penas, Veronica J. Peschansky, Claude‐Henry Volmar, Jann N. Sarkaria, Amadé Bregy, Ricardo J. Komotar, Georges St. Laurent, Nagi G. Ayad, Claes Wahlestedt - National Academy of Sciences, Proceedings of the National Academy of Sciences 2015 cited by 216
- A CRISPR/Cas13-based approach demonstrates biological relevance of vlinc class of long non-coding RNAs in anticancer drug response
Authors: Dongyang Xu, Ye Cai, Lu Tang, Xueer Han, Fan Gao, Huifen Cao, Fei Qi, Philipp Kapranov - Scientific Reports 2020 cited by 87
- Reverse-genetics studies of lncRNAs—what we have learnt and paths forward
Authors: Fan Gao, Ye Cai, Philipp Kapranov, Dongyang Xu - Genome biology 2020 cited by 108
- Large-Scale Transcriptional Activity in Chromosomes 21 and 22
Authors: Philipp Kapranov, Simon Cawley, Jörg Drenkow, Stefan Bekiranov, Robert L. Strausberg, Stephen P. A. Fodor, T Gingeras - Science 2002 cited by 916
- Genome-wide transcription and the implications for genomic organization
Authors: Philipp Kapranov, Aarron Willingham, T Gingeras - Nature Reviews Genetics 2007 cited by 719
- Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells
Authors: Huifen Cao, Lorena Salazar, Fan Gao, Thor Wahlestedt, Chun-Lin Wu, Xueer Han, Ye Cai, Dongyang Xu, Fang Wang, Lu Tang, Natalie Ricciardi, DingDing Cai, Huifang Wang, Mario P. S. Chin, James A. Timmons, Claes Wahlestedt, Philipp Kapranov - Nature Communications 2019 cited by 59
- Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation
Authors: Fatih Ozsolak, Philipp Kapranov, Sylvain Foissac, Sang Woo Kim, Elane Fishilevich, A. Paula Monaghan, Bino John, Patrice M. Milos - Cell 2010 cited by 415
- 5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary
Authors: Tarang Khare, Shraddha Pai, Karolis Koncevičius, Mrinal Pal, Edita Kriukienė, Zita Liutkevičiūtė, Manuel Irimia, Peixin Jia, Carolyn Ptak, Menghang Xia, Raymond R. Tice, Mamoru Tochigi, S. Moréra, Anaies Nazarians, Denise D. Belsham, Albert H.C. Wong, Benjamin J. Blencowe, Sun Chong Wang, Philipp Kapranov, Rafal Kustra, Viviane Labrie, Saulius Klimašauskas, Artūras Petronis - Nature Structural & Molecular Biology 2012 cited by 246
- Hovlinc is a recently evolved class of ribozyme found in human lncRNA
Authors: Yue Chen, Fei Qi, Fan Gao, Huifen Cao, Dongyang Xu, Kourosh Salehi‐Ashtiani, Philipp Kapranov - Nature Chemical Biology 2021 cited by 53
- Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
Authors: Jill Cheng, Philipp Kapranov, Jörg Drenkow, Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey C. Long, David L. Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K. Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S. Gerhard, T Gingeras - Science 2005 cited by 1,226
- Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
Authors: Kata Fejes-Toth, Ravi Sachidanandam, Ravi Sachidanandam, Gordon Assaf, Gregory J. Hannon, T Gingeras, Philipp Kapranov, Sylvain Foissac, Aarron T. Willingham, Radha Duttagupta, Erica Dumais - Nature 2009 cited by 436
- The transcriptional diversity of 25 Drosophila cell lines
Authors: Lucy Cherbas, Aarron Willingham, Dayu Zhang, Li Yang, Yi Zou, Brian D. Eads, Joseph W. Carlson, Jane M. Landolin, Philipp Kapranov, Jacqueline Dumais, Anastasia Samsonova, Jeong-Hyeon Choi, Johnny Roberts, Carrie Davis, Haixu Tang, Marijke J. van Baren, Srinka Ghosh, Alexander Dobin, Kimberly Bell, Wei Lin, Laura Langton, Michael O. Duff, Aaron Tenney, Chris Zaleski, Michael R. Brent, Roger A. Hoskins, Thomas C. Kaufman, Justen Andrews, Brenton R. Graveley, Norbert Perrimon, S Celniker, T Gingeras, Peter Cherbas - Genome Research 2010 cited by 286
- Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method
Authors: Ye Cai, Huifen Cao, Fang Wang, Yufei Zhang, Philipp Kapranov - Nature Communications 2022 cited by 24
- Relationships between p63 Binding, DNA Sequence, Transcription Activity, and Biological Function in Human Cells
Authors: Annie Yang, Zhou Zhu, Philipp Kapranov, Frank McKeon, George M. Church, T Gingeras, Kevin Struhl - Molecular Cell 2006 cited by 281
- Strategies to Annotate and Characterize Long Noncoding RNAs: Advantages and Pitfalls
Authors: Huifen Cao, Claes Wahlestedt, Philipp Kapranov - Trends in Genetics 2018 cited by 120
